ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf45p24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009563.1| Triticum aestivum clone wre1n.pk0006.h12:fis, full insert mRNA sequence Length = 577 Score = 509 bits (257), Expect = e-141 Identities = 408/458 (89%), Gaps = 3/458 (0%) Strand = Plus / Plus Query: 721 gcatgttctgcgaggggttctcgccctacggccccttctgggatcactgcctcgagtact 780 ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 17 gcatgttctgccaggggttctcgccctatggccccttctgggatcactgccttgagtact 76 Query: 781 ggagggcgagcgtggcgaggccggacaacgttctcttcctcaagtatgaggagatcaagt 840 |||||| ||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||| Sbjct: 77 ggagggagagcgtggcaaggccggacaatgttcttttcctaaagtatgaagagatcaagt 136 Query: 841 ccgatccggtgcaggtggtgaggaagctggcggagttcctcggcgtcccgctgaccgagg 900 ||||||||||||| | |||||||||||||||| | |||||||| |||||||||||| ||| Sbjct: 137 ccgatccggtgcatgcggtgaggaagctggcgaaattcctcggtgtcccgctgaccaagg 196 Query: 901 aggaggagagcgccggcgttgctcgggcggtggtgcggctgtgcagctttgagaagctta 960 | ||||||||| |||| ||||||| || ||||||||| |||||||||||||||| ||||| Sbjct: 197 atgaggagagctccggtgttgctcaggaggtggtgcgactgtgcagctttgagatgctta 256 Query: 961 ccagcctccaagtgaaccaggtcggcggcgttcgtcacagtgagagcgttcacgtcagta 1020 ||||||| || ||||| ||||||||||||||||| || | || | | ||||| ||| || Sbjct: 257 ccagcctgcaggtgaattaggtcggcggcgttcgttacggagataacattcacatcaata 316 Query: 1021 attctgtgttttacagaaaaggagtagtgggggactgggcaaaccacatgagccacgaga 1080 |||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||| Sbjct: 317 attctgtgttttacagaaaaggagaagtangggactgggcaaaccatatgagccaggaga 376 Query: 1081 tgggggacaagctggaccgcatcgtccaacacaagcttgacggatctggccttgtgtttt 1140 ||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 377 tgggggaggagttggaccgcatcgtccaacacaagcttgagggatctgggcttgtgtttt 436 Query: 1141 gagctgttgttatcatctgttcccttctcctttcctca 1178 ||| ||||||| |||||||| | ||||||||||||| Sbjct: 437 gagttgttgtt---atctgttcacgtctcctttcctca 471
>ref|NM_001068768.1| Oryza sativa (japonica cultivar-group) Os08g0515100 (Os08g0515100) mRNA, complete cds Length = 972 Score = 58.0 bits (29), Expect = 8e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 449 cgaccacccgctcctcacgcgccaccctcagcacgtcgtgccgttcatcgaga 501 |||||||||||| |||||| |||||| ||| || |||||||||||||||||| Sbjct: 312 cgaccacccgctgctcacgacccacccgcaggacctcgtgccgttcatcgaga 364 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Plus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 ||||||||||||| |||||||||||| |||| ||| |||| Sbjct: 401 acgcgctcccgtcaccgaggcttctctccacccacctgcc 440 Score = 44.1 bits (22), Expect = 1.2 Identities = 82/102 (80%) Strand = Plus / Plus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||| ||| ||| |||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 193 ttcgcgccgcgccccgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 252 Query: 396 atcaaagccctcgccttcaccatcaccaaccggacccgccac 437 |||| || ||| ||||| |||| ||||||| |||||||| Sbjct: 253 ctcaaggcgctctccttcgacatcgccaaccgctcccgccac 294
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 58.0 bits (29), Expect = 8e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 449 cgaccacccgctcctcacgcgccaccctcagcacgtcgtgccgttcatcgaga 501 |||||||||||| |||||| |||||| ||| || |||||||||||||||||| Sbjct: 25560265 cgaccacccgctgctcacgacccacccgcaggacctcgtgccgttcatcgaga 25560213 Score = 56.0 bits (28), Expect = 3e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||||||| |||| ||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 25558016 ttcgtgccacgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 25557957 Query: 396 atcaaagccctcgccttcaccatcaccaaccg 427 |||| || ||| ||||| ||||| ||||||| Sbjct: 25557956 ctcaaggcgctctccttcgccatcgccaaccg 25557925 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 |||||||||| ||||||||||| ||| |||| |||||||| Sbjct: 25528138 acgcgctcccctccccgaggctgctctccacccacatgcc 25528099 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 ||||||||||||| |||||||||||| |||| ||| |||| Sbjct: 25560176 acgcgctcccgtcaccgaggcttctctccacccacctgcc 25560137 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 929 ggtggtgcggctgtgcagctttgagaagct 958 ||||||| ||||||||||||| |||||||| Sbjct: 25557420 ggtggtgaggctgtgcagcttcgagaagct 25557391 Score = 44.1 bits (22), Expect = 1.2 Identities = 82/102 (80%) Strand = Plus / Minus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||| ||| ||| |||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 25560384 ttcgcgccgcgccccgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 25560325 Query: 396 atcaaagccctcgccttcaccatcaccaaccggacccgccac 437 |||| || ||| ||||| |||| ||||||| |||||||| Sbjct: 25560324 ctcaaggcgctctccttcgacatcgccaaccgctcccgccac 25560283 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 tcgtgccccgcgccgacgacatcatcctcgcca 369 ||||||||||||||| |||| || ||||||||| Sbjct: 8469005 tcgtgccccgcgccggcgacgtcctcctcgcca 8468973
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 58.0 bits (29), Expect = 8e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 449 cgaccacccgctcctcacgcgccaccctcagcacgtcgtgccgttcatcgaga 501 |||||||||||| |||||| |||||| ||| || |||||||||||||||||| Sbjct: 46956 cgaccacccgctgctcacgacccacccgcaggacctcgtgccgttcatcgaga 46904 Score = 56.0 bits (28), Expect = 3e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||||||| |||| ||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 44707 ttcgtgccacgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 44648 Query: 396 atcaaagccctcgccttcaccatcaccaaccg 427 |||| || ||| ||||| ||||| ||||||| Sbjct: 44647 ctcaaggcgctctccttcgccatcgccaaccg 44616 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 |||||||||| ||||||||||| ||| |||| |||||||| Sbjct: 14829 acgcgctcccctccccgaggctgctctccacccacatgcc 14790 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 ||||||||||||| |||||||||||| |||| ||| |||| Sbjct: 46867 acgcgctcccgtcaccgaggcttctctccacccacctgcc 46828 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 929 ggtggtgcggctgtgcagctttgagaagct 958 ||||||| ||||||||||||| |||||||| Sbjct: 44111 ggtggtgaggctgtgcagcttcgagaagct 44082 Score = 44.1 bits (22), Expect = 1.2 Identities = 82/102 (80%) Strand = Plus / Minus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||| ||| ||| |||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 47075 ttcgcgccgcgccccgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 47016 Query: 396 atcaaagccctcgccttcaccatcaccaaccggacccgccac 437 |||| || ||| ||||| |||| ||||||| |||||||| Sbjct: 47015 ctcaaggcgctctccttcgacatcgccaaccgctcccgccac 46974
>ref|NM_001068767.1| Oryza sativa (japonica cultivar-group) Os08g0515000 (Os08g0515000) mRNA, complete cds Length = 999 Score = 56.0 bits (28), Expect = 3e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 336 ttcgtgccccgcgccgacgacatcatcctcgccacgcagcccaaatgcggcaccacctgg 395 |||||||| |||| ||||||| | |||||||||| | || || ||||||||||||||| Sbjct: 184 ttcgtgccacgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctgg 243 Query: 396 atcaaagccctcgccttcaccatcaccaaccg 427 |||| || ||| ||||| ||||| ||||||| Sbjct: 244 ctcaaggcgctctccttcgccatcgccaaccg 275 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 929 ggtggtgcggctgtgcagctttgagaagct 958 ||||||| ||||||||||||| |||||||| Sbjct: 780 ggtggtgaggctgtgcagcttcgagaagct 809
>ref|NM_001049398.1| Oryza sativa (japonica cultivar-group) Os01g0311600 (Os01g0311600) mRNA, complete cds Length = 1407 Score = 48.1 bits (24), Expect = 0.077 Identities = 45/52 (86%) Strand = Plus / Plus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacgccctcgtgtc 658 |||||||| |||||||||| ||||| | |||||||||||| ||||||||| Sbjct: 563 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggactgcctcgtgtc 614
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 374 gcccaaatgcggcaccacctggatcaaagccctcgccttc 413 |||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 2406826 gcccaagtgcggcaccacgtggctcaaggccctcgccttc 2406787 Score = 46.1 bits (23), Expect = 0.30 Identities = 35/39 (89%) Strand = Plus / Minus Query: 375 cccaaatgcggcaccacctggatcaaagccctcgccttc 413 ||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 2542868 cccaagtgcggcaccacgtggctcaaggccctcgccttc 2542830
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.077 Identities = 45/52 (86%) Strand = Plus / Minus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacgccctcgtgtc 658 |||||||| |||||||||| ||||| | |||||||||||| ||||||||| Sbjct: 11686970 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggactgcctcgtgtc 11686919
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 48.1 bits (24), Expect = 0.077 Identities = 27/28 (96%) Strand = Plus / Minus Query: 873 gagttcctcggcgtcccgctgaccgagg 900 |||| ||||||||||||||||||||||| Sbjct: 44378 gagtccctcggcgtcccgctgaccgagg 44351
>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid sulfotransferase (ss1 gene) Length = 1096 Score = 48.1 bits (24), Expect = 0.077 Identities = 45/52 (86%) Strand = Plus / Plus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacgccctcgtgtc 658 |||||||| |||||||||| ||||| | |||||||||||| ||||||||| Sbjct: 504 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggactgcctcgtgtc 555
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 48.1 bits (24), Expect = 0.077 Identities = 45/52 (86%) Strand = Plus / Minus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacgccctcgtgtc 658 |||||||| |||||||||| ||||| | |||||||||||| ||||||||| Sbjct: 126094 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggactgcctcgtgtc 126043
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 48.1 bits (24), Expect = 0.077 Identities = 45/52 (86%) Strand = Plus / Minus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacgccctcgtgtc 658 |||||||| |||||||||| ||||| | |||||||||||| ||||||||| Sbjct: 26138 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggactgcctcgtgtc 26087
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 374 gcccaaatgcggcaccacctggatcaaagccctcgccttc 413 |||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 109834 gcccaagtgcggcaccacgtggctcaaggccctcgccttc 109795
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 48.1 bits (24), Expect = 0.077 Identities = 36/40 (90%) Strand = Plus / Minus Query: 535 acgcgctcccgtccccgaggcttctcgccacgcacatgcc 574 |||||||||| ||||||||||| ||| |||| |||||||| Sbjct: 159454 acgcgctcccctccccgaggctgctctccacccacatgcc 159415
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 46.1 bits (23), Expect = 0.30 Identities = 35/39 (89%) Strand = Plus / Minus Query: 375 cccaaatgcggcaccacctggatcaaagccctcgccttc 413 ||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 107848 cccaagtgcggcaccacgtggctcaaggccctcgccttc 107810
>ref|NM_001072642.1| Oryza sativa (japonica cultivar-group) Os12g0137600 (Os12g0137600) mRNA, complete cds Length = 732 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 189 ggtggtgtacctgtgccgggatcccaagga 218
>ref|NM_001074369.1| Oryza sativa (japonica cultivar-group) Os11g0450300 (Os11g0450300) mRNA, complete cds Length = 1103 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 387 accacctggatcaaagccctcgcctt 412 ||||||||| |||||||||||||||| Sbjct: 916 accacctggctcaaagccctcgcctt 891
>ref|NM_001074368.1| Oryza sativa (japonica cultivar-group) Os11g0450400 (Os11g0450400) mRNA, complete cds Length = 1011 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 387 accacctggatcaaagccctcgcctt 412 ||||||||| |||||||||||||||| Sbjct: 190 accacctggctcaaagccctcgcctt 215
>ref|XM_001166437.1| PREDICTED: Pan troglodytes sprouty-related protein with EVH-1 domain 2, transcript variant 2 (SPRED2), mRNA Length = 4458 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 225 cgaggaggaggagagcgccggc 204
>ref|XM_001166473.1| PREDICTED: Pan troglodytes sprouty-related protein with EVH-1 domain 2, transcript variant 3 (SPRED2), mRNA Length = 4500 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 225 cgaggaggaggagagcgccggc 204
>ref|XM_001091716.1| PREDICTED: Macaca mulatta similar to sprouty-related protein with EVH-1 domain 2, transcript variant 4 (LOC697196), mRNA Length = 4482 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 225 cgaggaggaggagagcgccggc 204
>ref|XM_991560.1| PREDICTED: Mus musculus phosphatidylinositol-4-phosphate 5-kinase, type II, beta, transcript variant 1 (Pip5k2b), mRNA Length = 2622 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 784 gggcgagcgtggcgaggccgga 805 |||||||||||||||||||||| Sbjct: 293 gggcgagcgtggcgaggccgga 272
>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0027D12 map near 50283S, complete sequence Length = 128988 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 387 accacctggatcaaagccctcgcctt 412 ||||||||| |||||||||||||||| Sbjct: 36539 accacctggctcaaagccctcgcctt 36514
>ref|NG_004748.1| Homo sapiens Sp3 transcription factor pseudogene (LOC160824) on chromosome 13 gb|AY441959.1| Homo sapiens transcription factor SP3 (SP3) pseudogene, partial sequence Length = 3832 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 78 cgaggaggaggagagcgccggc 99
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 24321 ggtggtgtacctgtgccgggatcccaagga 24292
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 110495 ggtggtgtacctgtgccgggatcccaagga 110466
>dbj|AK037013.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930037P15 product:unclassifiable, full insert sequence Length = 2621 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 784 gggcgagcgtggcgaggccgga 805 |||||||||||||||||||||| Sbjct: 294 gggcgagcgtggcgaggccgga 273
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 1821956 ggtggtgtacctgtgccgggatcccaagga 1821927 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 381 tgcggcaccacctggatcaaagccctcgccttc 413 ||||||||||||||| |||| || ||||||||| Sbjct: 9822676 tgcggcaccacctggctcaaggcgctcgccttc 9822644
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 1892665 ggtggtgtacctgtgccgggatcccaagga 1892636 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 387 accacctggatcaaagccctcgcctt 412 ||||||||| |||||||||||||||| Sbjct: 14537126 accacctggctcaaagccctcgcctt 14537101 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 17387027 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 17387075
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 868 tggcggagttcctcggcgtccc 889 |||||||||||||||||||||| Sbjct: 815036 tggcggagttcctcggcgtccc 815057
>emb|AL163533.14| Human DNA sequence from clone RP11-114G1 on chromosome 13q31.3-33.1 Contains a Sp3 transcription factor (SP3) pseudogene and a novel gene, complete sequence Length = 153592 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 3558 cgaggaggaggagagcgccggc 3537
>gb|AC012370.8| Homo sapiens BAC clone RP11-568D19 from 2, complete sequence Length = 105362 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 65235 cgaggaggaggagagcgccggc 65256
>dbj|AK059900.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G02, full insert sequence Length = 1103 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 387 accacctggatcaaagccctcgcctt 412 ||||||||| |||||||||||||||| Sbjct: 188 accacctggctcaaagccctcgcctt 213
>gb|BC111495.1| Homo sapiens sprouty-related, EVH1 domain containing 2, mRNA (cDNA clone IMAGE:5724532), partial cds Length = 1768 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 896 cgaggaggaggagagcgccggc 917 |||||||||||||||||||||| Sbjct: 170 cgaggaggaggagagcgccggc 149
>gb|AY108956.1| Zea mays PCO130274 mRNA sequence Length = 631 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 cgcgccgacgacatcatcctcgccac 370 ||||||||||||||| |||||||||| Sbjct: 307 cgcgccgacgacatcgtcctcgccac 332 Score = 44.1 bits (22), Expect = 1.2 Identities = 37/42 (88%) Strand = Plus / Plus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggacg 648 |||||||||| || |||||||||||| || | |||||||||| Sbjct: 578 ccggctgccgcgtcgtgtacctgtgccggcagcccaaggacg 619
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 16674 ggtggtgtacctgtgccgggatcccaagga 16645
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 617 ggtggtgtacctgtgcagggaccccaagga 646 |||||||||||||||| |||| |||||||| Sbjct: 18526 ggtggtgtacctgtgccgggatcccaagga 18555
>emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on chromosome 11, complete sequence Length = 191735 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 784 gggcgagcgtggcgaggccgga 805 |||||||||||||||||||||| Sbjct: 22907 gggcgagcgtggcgaggccgga 22928
>emb|CT833232.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence Length = 2125 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 1305 tcaagtatgaggagatcaagt 1285
>emb|CT837748.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence Length = 1432 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttcatcgagatccccggcgccggcg 516 ||||||| ||||||||||||||||| Sbjct: 1075 ttcatcgggatccccggcgccggcg 1051
>emb|CT837574.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030N04, full insert sequence Length = 837 Score = 42.1 bits (21), Expect = 4.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 361 tcctcgccacgcagcccaaatgcggcaccacctggatcaaagccctcgccttc 413 ||||||||| | |||||| ||||||||||| ||| |||| ||||| |||||| Sbjct: 328 tcctcgccagcctgcccaagtgcggcaccacgtggctcaaggccctggccttc 380
>dbj|AK243208.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100042A05, full insert sequence Length = 1477 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttcatcgagatccccggcgccggcg 516 ||||||| ||||||||||||||||| Sbjct: 1117 ttcatcgggatccccggcgccggcg 1093
>ref|NM_001074482.1| Oryza sativa (japonica cultivar-group) Os11g0505200 (Os11g0505200) mRNA, complete cds Length = 1222 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 970 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 922
>ref|NM_001074481.1| Oryza sativa (japonica cultivar-group) Os11g0505300 (Os11g0505300) mRNA, complete cds Length = 1131 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 222 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 270
>ref|NM_001070881.1| Oryza sativa (japonica cultivar-group) Os10g0323000 (Os10g0323000) mRNA, complete cds Length = 2097 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 1299 tcaagtatgaggagatcaagt 1279
>ref|NM_001067866.1| Oryza sativa (japonica cultivar-group) Os08g0240000 (Os08g0240000) mRNA, complete cds Length = 1234 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 tcgtgccccgcgccgacgacatcatcctcgcca 369 ||||||||||||||| |||| || ||||||||| Sbjct: 242 tcgtgccccgcgccggcgacgtcctcctcgcca 274
>ref|NM_001056732.1| Oryza sativa (japonica cultivar-group) Os03g0370200 (Os03g0370200) mRNA, complete cds Length = 3773 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttcatcgagatccccggcgccggcg 516 ||||||| ||||||||||||||||| Sbjct: 2707 ttcatcgggatccccggcgccggcg 2731
>gb|AC189312.1| Brassica rapa subsp. pekinensis clone KBrB034L08, complete sequence Length = 130770 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1135 tgttttgagctgttgttatca 1155 ||||||||||||||||||||| Sbjct: 114881 tgttttgagctgttgttatca 114901
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 877 tcctcggcgtcccgctgaccg 897 ||||||||||||||||||||| Sbjct: 268899 tcctcggcgtcccgctgaccg 268919
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 690 ggcgccaacctgtccatggacggcg 714 |||||||||||||| |||||||||| Sbjct: 1557710 ggcgccaacctgtcgatggacggcg 1557734
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 ggccttcgtgccccgcgccgacgac 356 ||||||||||| ||||||||||||| Sbjct: 2992461 ggccttcgtgcgccgcgccgacgac 2992485
>gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome 9, complete sequence Length = 191932 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 938 gctgtgcagctttgagaagct 958 ||||||||||||||||||||| Sbjct: 178079 gctgtgcagctttgagaagct 178099
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1059 gcaaaccacatgagccacgagatgg 1083 ||||||||||||||| ||||||||| Sbjct: 254161 gcaaaccacatgagctacgagatgg 254137
>gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosynthetic gene cluster, complete sequence Length = 48200 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 929 ggtggtgcggctgtgcagctt 949 ||||||||||||||||||||| Sbjct: 37986 ggtggtgcggctgtgcagctt 38006
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 115809 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 115857
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 141802 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 141850
>gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 160376 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 aggggtggtctcaaccactgg 270 ||||||||||||||||||||| Sbjct: 30218 aggggtggtctcaaccactgg 30198
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 cgccgacgacatcatcctcgccacg 371 ||||||||| ||||||||||||||| Sbjct: 738933 cgccgacgatatcatcctcgccacg 738957
>gb|AC107621.2| Homo sapiens chromosome 3 clone RP11-632N21, complete sequence Length = 153582 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 753 cccttctgggatcactgcctc 773 ||||||||||||||||||||| Sbjct: 63694 cccttctgggatcactgcctc 63714
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 8432952 tcaagtatgaggagatcaagt 8432932
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttcatcgagatccccggcgccggcg 516 ||||||| ||||||||||||||||| Sbjct: 14371655 ttcatcgggatccccggcgccggcg 14371679
>emb|CR381619.9| Zebrafish DNA sequence from clone DKEY-1O2 in linkage group 5, complete sequence Length = 266753 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gcagaatatgtggcctttata 33 ||||||||||||||||||||| Sbjct: 223810 gcagaatatgtggcctttata 223790
>gb|S65296.1|S65279S10 drebrin {clone eDcg5} [chickens, Genomic, 213 nt, segment 10 of 10] Length = 213 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 887 cccgctgaccgaggaggaggagagc 911 ||||||| ||||||||||||||||| Sbjct: 56 cccgctgcccgaggaggaggagagc 80
>gb|S65267.1| Gallus gallus drebrin A mRNA, alternatively spliced, partial cds Length = 1919 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 887 cccgctgaccgaggaggaggagagc 911 ||||||| ||||||||||||||||| Sbjct: 1523 cccgctgcccgaggaggaggagagc 1547
>gb|AC156602.2| Laccaria bicolor clone JGIAHZW-6X, complete sequence Length = 42288 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 ccctcgccttcaccatcacca 423 ||||||||||||||||||||| Sbjct: 25370 ccctcgccttcaccatcacca 25350
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttcatcgagatccccggcgccggcg 516 ||||||| ||||||||||||||||| Sbjct: 125909 ttcatcgggatccccggcgccggcg 125933
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0065C16, from Chromosome 10, complete sequence Length = 146391 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 87838 tcaagtatgaggagatcaagt 87858
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 690 ggcgccaacctgtccatggacggcg 714 |||||||||||||| |||||||||| Sbjct: 212263 ggcgccaacctgtcgatggacggcg 212239
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 tcgtgccccgcgccgacgacatcatcctcgcca 369 ||||||||||||||| |||| || ||||||||| Sbjct: 84722 tcgtgccccgcgccggcgacgtcctcctcgcca 84690
>dbj|BS000195.1| Pan troglodytes chromosome 22 clone:PTB-014E11, map 22, complete sequences Length = 251753 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1154 catctgttcccttctcctttc 1174 ||||||||||||||||||||| Sbjct: 153364 catctgttcccttctcctttc 153384
>dbj|AK110835.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A11, full insert sequence Length = 2099 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 1301 tcaagtatgaggagatcaagt 1281
>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full insert sequence Length = 1407 Score = 42.1 bits (21), Expect = 4.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 607 ccggctgccgggtggtgtacctgtgcagggaccccaaggac 647 |||||||| |||||||||| ||||| | |||||||||||| Sbjct: 563 ccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 603
>dbj|AK099021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124F24, full insert sequence Length = 1209 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 tcgtgccccgcgccgacgacatcatcctcgcca 369 ||||||||||||||| |||| || ||||||||| Sbjct: 244 tcgtgccccgcgccggcgacgtcctcctcgcca 276
>dbj|AK070224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G18, full insert sequence Length = 1207 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 tgcggcaccacctggatcaaagccctcgccttc 413 ||||||||||||||| |||| || ||||||||| Sbjct: 273 tgcggcaccacctggctcaaggcgctcgccttc 305
>dbj|AK068192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135O21, full insert sequence Length = 2200 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 tcaagtatgaggagatcaagt 840 ||||||||||||||||||||| Sbjct: 1632 tcaagtatgaggagatcaagt 1612
>dbj|AK061204.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B05, full insert sequence Length = 1234 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 tcgtgccccgcgccgacgacatcatcctcgcca 369 ||||||||||||||| |||| || ||||||||| Sbjct: 242 tcgtgccccgcgccggcgacgtcctcctcgcca 274
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 42.1 bits (21), Expect = 4.7 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 cggcaccacctggatcaaagccctcgccttcaccatcaccaaccggacc 431 ||||||||||||| |||| || ||||||||| | | || |||||||||| Sbjct: 253 cggcaccacctggctcaaggcgctcgccttcgcaaccatcaaccggacc 301
>ref|XM_842735.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0805) partial mRNA Length = 1059 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 cgccgacgacatcatcctcgccacg 371 ||||||||| ||||||||||||||| Sbjct: 856 cgccgacgatatcatcctcgccacg 832
>gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complete sequence Length = 222729 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 938 gctgtgcagctttgagaagct 958 ||||||||||||||||||||| Sbjct: 40155 gctgtgcagctttgagaagct 40175
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 42.1 bits (21), Expect = 4.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 381 tgcggcaccacctggatcaaagccctcgccttc 413 ||||||||||||||| |||| || ||||||||| Sbjct: 109794 tgcggcaccacctggctcaaggcgctcgccttc 109826
>ref|NM_205499.1| Gallus gallus drebrin 1 (DBN1), mRNA gb|M36961.1|CHKDEBPDA Chicken drebrin mRNA Length = 2102 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 887 cccgctgaccgaggaggaggagagc 911 ||||||| ||||||||||||||||| Sbjct: 1841 cccgctgcccgaggaggaggagagc 1865 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 180,113,326 Number of extensions: 10660583 Number of successful extensions: 207759 Number of sequences better than 10.0: 81 Number of HSP's gapped: 207758 Number of HSP's successfully gapped: 100 Length of query: 1248 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1225 Effective length of database: 18,503,978,556 Effective search space: 22667373731100 Effective search space used: 22667373731100 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
