>Q9H2Z4:NKX24_HUMAN Homeobox protein Nkx-2.4 - Homo sapiens (Human)|
          Length = 353
 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -1

Query: 210 PVLPPQPIAFAAQVVLKLFLAAREGDDGEPCGGGSAPDRHRRREQRPAPVDHP 52
           P  PP P   A  V++K         DG+PC G S P   +   Q PAP   P
Sbjct: 266 PPPPPSPRRAAVPVLVK---------DGKPCQGASTPTPGQAGPQPPAPTPAP 309

>Q08412:CUE5_YEAST Ubiquitin-binding protein CUE5 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 411

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 180 RRR*AEAAGQGHHDQRQLMDHGRKRHKTKKRAFHHISTSVKESWS 314
           RRR  + A +  H+QR      R+RH   +R  HH  +  ++SWS
Sbjct: 189 RRRNRDRATRSMHEQR------RRRHNPNEREQHHEDSEEEDSWS 227

>P27197:AURB_CHLAU Auracyanin-B precursor - Chloroflexus aurantiacus|
          Length = 235

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = -1

Query: 255 GAFFHGPLVGAGHGGPVLPPQPIAFAAQVVLKLFLAAREGDDGEPCGGGSAPDRHRRREQ 76
           G+ F G   G+  G P++    +AF A +++ + + A     G        P    R   
Sbjct: 20  GSTFSG---GSAGGPPLIVMMGLAFGAGLIMLIVMIASNATAGGFVAATPRPTATPRPTA 76

Query: 75  RPAPVDHPAAFTNPLPCTLSLLVP 4
            PAP   PAA     P T +   P
Sbjct: 77  APAPTQPPAAQPTTAPATQAANAP 100

>Q5UZE6:SYA_HALMA Alanyl-tRNA synthetase - Haloarcula marismortui (Halobacterium|
           marismortui)
          Length = 927

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
 Frame = -1

Query: 348 SHHV*NTAED-------------YWTKTPSRM*--IYDEMLVSLSCGAFFHGPLVGAGHG 214
           +HH  N  ED             YW     +    +++EM  +L    +   P VG G+ 
Sbjct: 149 AHHAFNAREDIEDPEQYAYEGEVYWKNETVQYCDELFEEMGANLDEIVYIEDPWVGGGNA 208

Query: 213 GPVLPPQPIAFAAQVVLKLFLAAREGDDGE 124
           GP +  + I   A++   +F++  +  DGE
Sbjct: 209 GPAI--EVIYRGAELATLVFMSMEQDSDGE 236

>P56785:YCF1_ARATH Putative membrane protein ycf1 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 1786

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +3

Query: 417  LRFPACQVAQTFIFATVSSLSENNLCAFLDLITASFLFSSFFCKD 551
            + +  C ++Q ++F  +S +  +N C    ++  +   +SFF K+
Sbjct: 1144 MSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKN 1188

>P97313:PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit - Mus musculus (Mouse)|
          Length = 4128

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 267  KRAFHHISTSVKESWSNNPLPCFKHDA 347
            +RAFHH+S +V+ +     L C+ H+A
Sbjct: 3379 QRAFHHLSKAVQSAEEETQLSCWGHEA 3405


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 103,104,669
Number of extensions: 2262302
Number of successful extensions: 7216
Number of sequences better than 10.0: 6
Number of HSP's gapped: 7207
Number of HSP's successfully gapped: 6
Length of query: 206
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 98
Effective length of database: 71,062,579
Effective search space: 6964132742
Effective search space used: 6964132742
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)