ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf36c06 |
|---|---|
| Clone Library Name | barley_pub |
>P62323:SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 - Xenopus laevis (African| clawed frog) Length = 126 Score = 133 bits (335), Expect = 7e-31 Identities = 58/94 (61%), Positives = 78/94 (82%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 S+G+P+K+LHEA GH+VT E TGEVYRG +IE EDN NCQ+ NIT T +DG+V+QLE V Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61 Query: 229 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGS 330 +IRGS++RF+I+PDMLKNAPM K ++ + +G G+ Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
>P62320:SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 - Mus musculus (Mouse)| Length = 126 Score = 133 bits (335), Expect = 7e-31 Identities = 58/94 (61%), Positives = 78/94 (82%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 S+G+P+K+LHEA GH+VT E TGEVYRG +IE EDN NCQ+ NIT T +DG+V+QLE V Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61 Query: 229 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGS 330 +IRGS++RF+I+PDMLKNAPM K ++ + +G G+ Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
>P62318:SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 - Homo sapiens (Human)| Length = 126 Score = 133 bits (335), Expect = 7e-31 Identities = 58/94 (61%), Positives = 78/94 (82%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 S+G+P+K+LHEA GH+VT E TGEVYRG +IE EDN NCQ+ NIT T +DG+V+QLE V Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61 Query: 229 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGS 330 +IRGS++RF+I+PDMLKNAPM K ++ + +G G+ Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
>O44437:SMD3_DROME Small nuclear ribonucleoprotein SM D3 - Drosophila melanogaster| (Fruit fly) Length = 151 Score = 124 bits (311), Expect = 4e-28 Identities = 53/84 (63%), Positives = 71/84 (84%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 S+G+P+K+LHEA GH++T E TGEVYRG +IE EDN NCQ+ IT T +DG+ + LE+V Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61 Query: 229 FIRGSRVRFMIIPDMLKNAPMFKR 300 +IRGS++RF+I+PDMLKNAPMFK+ Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKK 85
>Q17348:SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 - Caenorhabditis elegans| Length = 136 Score = 120 bits (301), Expect = 6e-27 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 15/110 (13%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 S+G+P+K+LHEA GH+VT+E TGEVYRG + E EDN NCQ+ T +DG+ QL++V Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62 Query: 229 FIRGSRVRFMIIPDMLKNAPMFKR---------------LEARIRGKGSA 333 FIRG+++RFMI+PDMLKNAPMFK L+ R RG+G+A Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRGTA 112
>Q9UUC6:SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm D3 -| Schizosaccharomyces pombe (Fission yeast) Length = 97 Score = 115 bits (288), Expect = 2e-25 Identities = 49/82 (59%), Positives = 67/82 (81%) Frame = +1 Query: 52 LGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVF 231 + + +KLLHE GH+VT+EL+ G YRG +IE EDN NCQ+ +I+ TA+DG+VS L+ V+ Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60 Query: 232 IRGSRVRFMIIPDMLKNAPMFK 297 IRGS +RF+I+PDML+NAPMFK Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFK 82
>P43321:SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 - Saccharomyces cerevisiae| (Baker's yeast) Length = 101 Score = 103 bits (257), Expect = 8e-22 Identities = 42/86 (48%), Positives = 67/86 (77%) Frame = +1 Query: 55 GIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFI 234 GIPVKLL+EA GH+V++EL TG YRG ++E ED+ N Q+ ++ T G V+ ++ +F+ Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64 Query: 235 RGSRVRFMIIPDMLKNAPMFKRLEAR 312 RGS+++F+++PD+LKNAP+FK+ +R Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSR 90
>Q9QXA5:LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 - Mus musculus (Mouse)| Length = 137 Score = 62.0 bits (149), Expect = 3e-09 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNW-NCQIENITFTAKDG-KVSQLEHVF 231 +P+ LL A H + VELK GE Y G ++ C DNW N + + T++DG K ++ + Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60 Query: 232 IRGSRVRFMIIPDMLKNAPMFKRLEARIRGKG 327 IRGS ++++ IPD + M + A+ RG+G Sbjct: 61 IRGSTIKYLRIPDEI--IDMVREEAAKGRGRG 90
>Q9Y4Z0:LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 - Homo sapiens (Human)| Length = 139 Score = 60.5 bits (145), Expect = 8e-09 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNW-NCQIENITFTAKDG-KVSQLEHVF 231 +P+ LL A H + VELK GE Y G ++ C DNW N + + T++DG K ++ + Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60 Query: 232 IRGSRVRFMIIPDMLKNAPMFKRLEARIRGKG 327 IRGS ++++ IPD + + + + + A+ RG+G Sbjct: 61 IRGSTIKYLRIPDEIIDM-VKEEVVAKGRGRG 91
>Q3ZBK6:LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 - Bos taurus (Bovine)| Length = 139 Score = 60.5 bits (145), Expect = 8e-09 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNW-NCQIENITFTAKDG-KVSQLEHVF 231 +P+ LL A H + VELK GE Y G ++ C DNW N + + T++DG K ++ + Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60 Query: 232 IRGSRVRFMIIPDMLKNAPMFKRLEARIRGKG 327 IRGS ++++ IPD + + + + + A+ RG+G Sbjct: 61 IRGSTIKYLRIPDEIIDM-VKEEVVAKGRGRG 91
>Q9LGE6:LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 - Oryza sativa| subsp. japonica (Rice) Length = 147 Score = 59.7 bits (143), Expect = 1e-08 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFI 234 +P+ LL A GH + VELK GE Y G ++ C+ N + + T+KDG K ++ +I Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61 Query: 235 RGSRVRFMIIPD 270 RG+ ++++ +PD Sbjct: 62 RGNTIKYLRVPD 73
>Q9ZRU9:LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 - Fagus sylvatica| (Beechnut) Length = 148 Score = 58.5 bits (140), Expect = 3e-08 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFI 234 +P+ LL A GH + VELK+GE Y G ++ C+ N + + T+KDG + ++ +I Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61 Query: 235 RGSRVRFMIIPD 270 RG+ ++++ +PD Sbjct: 62 RGNTIKYLRVPD 73
>Q19952:LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4 - Caenorhabditis| elegans Length = 123 Score = 58.5 bits (140), Expect = 3e-08 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFI 234 +P+ LL A H + VELK GE Y G + C+ N + ++ FT+KDG K ++ ++ Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62 Query: 235 RGSRVRFMIIPD 270 RGS ++++ IP+ Sbjct: 63 RGSTIKYLRIPE 74
>Q43582:LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 - Nicotiana| tabacum (Common tobacco) Length = 146 Score = 58.2 bits (139), Expect = 4e-08 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFI 234 +P+ LL A GH + VELK GE Y G ++ C+ N + + T+KDG + ++ ++ Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61 Query: 235 RGSRVRFMIIPD 270 RG+ ++++ +PD Sbjct: 62 RGNTIKYLRVPD 73
>O14352:LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4 -| Schizosaccharomyces pombe (Fission yeast) Length = 121 Score = 50.8 bits (120), Expect = 6e-06 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFI 234 +P+ LL+ G + VELK GE + G + C++ N + + T DG K +L +I Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61 Query: 235 RGSRVRFMIIPDML------KNAPMFKRLEARIRGKG 327 RG+ ++++ I D + + A + +R RG+G Sbjct: 62 RGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRG 98
>P62315:SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 - Mus musculus (Mouse)| Length = 119 Score = 50.4 bits (119), Expect = 8e-06 Identities = 25/87 (28%), Positives = 48/87 (55%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + VT+ELK G G++ + + N ++ + T K+ + QLE + IRG+ Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63 Query: 244 RVRFMIIPDMLKNAPMFKRLEARIRGK 324 +R+ I+PD L + +E +++ K Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>Q4R5F6:SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 119 Score = 50.4 bits (119), Expect = 8e-06 Identities = 25/87 (28%), Positives = 48/87 (55%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + VT+ELK G G++ + + N ++ + T K+ + QLE + IRG+ Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63 Query: 244 RVRFMIIPDMLKNAPMFKRLEARIRGK 324 +R+ I+PD L + +E +++ K Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>P62314:SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 - Homo sapiens (Human)| Length = 119 Score = 50.4 bits (119), Expect = 8e-06 Identities = 25/87 (28%), Positives = 48/87 (55%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + VT+ELK G G++ + + N ++ + T K+ + QLE + IRG+ Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63 Query: 244 RVRFMIIPDMLKNAPMFKRLEARIRGK 324 +R+ I+PD L + +E +++ K Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>Q3ZC10:SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 - Bos taurus (Bovine)| Length = 119 Score = 50.4 bits (119), Expect = 8e-06 Identities = 25/87 (28%), Positives = 48/87 (55%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + VT+ELK G G++ + + N ++ + T K+ + QLE + IRG+ Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63 Query: 244 RVRFMIIPDMLKNAPMFKRLEARIRGK 324 +R+ I+PD L + +E +++ K Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>Q8QZX5:LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 - Mus musculus (Mouse)| Length = 122 Score = 45.4 bits (106), Expect = 3e-04 Identities = 22/67 (32%), Positives = 38/67 (56%) Frame = +1 Query: 70 LLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGSRV 249 LL G + TV+L+ V RG + + N ++ N+T+T + G +L+ +F+ G V Sbjct: 20 LLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNV 79 Query: 250 RFMIIPD 270 R++ IPD Sbjct: 80 RYVHIPD 86
>O42661:SMD1_SCHPO Probable small nuclear ribonucleoprotein Sm D1 -| Schizosaccharomyces pombe (Fission yeast) Length = 117 Score = 45.1 bits (105), Expect = 3e-04 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 9/97 (9%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + V++ELK G + G++ + N ++ + T K + +E + IRG+ Sbjct: 4 VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63 Query: 244 RVRFMIIPDML---------KNAPMFKRLEARIRGKG 327 +R+ I+PD L P K+ E +RG+G Sbjct: 64 NIRYYILPDSLPLDTLLIDDSTKPKQKKKEV-VRGRG 99
>Q9VU02:SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 - Drosophila| melanogaster (Fruit fly) Length = 124 Score = 44.7 bits (104), Expect = 4e-04 Identities = 22/71 (30%), Positives = 39/71 (54%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + VT+ELK G G++ + N ++++ T K+ LE + IRG+ Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63 Query: 244 RVRFMIIPDML 276 +R+ I+PD L Sbjct: 64 NIRYFILPDSL 74
>Q10013:SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 - Caenorhabditis| elegans Length = 126 Score = 42.7 bits (99), Expect = 0.002 Identities = 20/71 (28%), Positives = 41/71 (57%) Frame = +1 Query: 64 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 243 V+ L + + V +ELK G G+++ + N + ++ T K+ + +L+ + IRG+ Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63 Query: 244 RVRFMIIPDML 276 +R++I+PD L Sbjct: 64 NIRYIILPDPL 74
>P40070:LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 - Saccharomyces cerevisiae| (Baker's yeast) Length = 187 Score = 42.4 bits (98), Expect = 0.002 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 12/83 (14%) Frame = +1 Query: 58 IPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNW-NCQIENIT-----------FTAKD 201 +P+ LL A G + +ELK GE+ +G + DNW N + N+T A+ Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60 Query: 202 GKVSQLEHVFIRGSRVRFMIIPD 270 K +L ++IRG+ ++F+ + D Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>Q969L4:LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 - Homo sapiens (Human)| Length = 123 Score = 41.2 bits (95), Expect = 0.005 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +1 Query: 70 LLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGSRV 249 LL G V TV+L+ V G + + N ++ +T+T + G +L+ +F+ G V Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNV 79 Query: 250 RFMIIPD 270 R++ IPD Sbjct: 80 RYVHIPD 86
>P97347:RPTN_MOUSE Repetin - Mus musculus (Mouse)| Length = 1130 Score = 37.0 bits (84), Expect = 0.089 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = +3 Query: 132 GLHDRV--RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPR 305 G HD+ +GQ D+ H KGRQ +++ HQGQ+G+ P Q+ H Q+P Sbjct: 695 GRHDQSPHQGQKGRHDQSPHQGQKGRQDLSS----HQGQKGRQDQSPHLGQKGRHDQSPH 750 Query: 306 GQDKGQ 323 KG+ Sbjct: 751 RGQKGR 756 Score = 34.3 bits (77), Expect = 0.58 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +3 Query: 150 RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 +GQ D H KGRQ ++ HQGQ+G+ P Q+ H Q+P KG+ Sbjct: 655 QGQKGRQDLSSHQGQKGRQDLSP----HQGQKGRQDQSPHLGQKGRHDQSPHQGQKGR 708 Score = 32.3 bits (72), Expect = 2.2 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = +3 Query: 132 GLHDRV--RGQLELPDREHHIHSKGRQGVAAGARLHQGQ-QGQVHDHPRHAQERPHVQAP 302 G HD+ RGQ D+ H KGRQ ++ HQGQ +GQ + H +R Sbjct: 743 GRHDQSPHRGQKGRQDQSPHQGQKGRQDQSS----HQGQREGQEQNSHWHRTDRQGQSFH 798 Query: 303 RGQDKGQGV 329 GQ GQG+ Sbjct: 799 YGQTGGQGL 807 Score = 31.6 bits (70), Expect = 3.7 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 153 GQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 GQ D+ H KGRQ + HQGQ+G+ P Q+ Q+P KG+ Sbjct: 344 GQKGRQDQSPHRGQKGRQDQSP----HQGQKGRQDQSPHRGQKGRQDQSPHQGQKGR 396 Score = 30.8 bits (68), Expect = 6.4 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +3 Query: 150 RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 +GQ D+ H KGRQ + HQGQ+G+ P Q+ Q+P KG+ Sbjct: 367 QGQKGRQDQSPHRGQKGRQDQSP----HQGQKGRQDQSPHLGQKGRQDQSPHQGQKGR 420 Score = 30.8 bits (68), Expect = 6.4 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +3 Query: 150 RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 RGQ D+ H KGRQ + H GQ+G+ P Q+ Q+P KG+ Sbjct: 379 RGQKGRQDQSPHQGQKGRQDQSP----HLGQKGRQDQSPHQGQKGRQDQSPHQGQKGR 432 Score = 30.8 bits (68), Expect = 6.4 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +3 Query: 150 RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 +GQ D+ H+ KGRQ + HQGQ+G+ P Q+ Q+ KG+ Sbjct: 391 QGQKGRQDQSPHLGQKGRQDQSP----HQGQKGRQDQSPHQGQKGRQDQSSHQGQKGR 444 Score = 30.8 bits (68), Expect = 6.4 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +3 Query: 150 RGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 +GQ D H KGRQ + H GQ+G+ P Q+ H Q+P KG+ Sbjct: 667 QGQKGRQDLSPHQGQKGRQDQSP----HLGQKGRHDQSPHQGQKGRHDQSPHQGQKGR 720
>Q9VUQ5:AGO2_DROME Protein argonaute-2 - Drosophila melanogaster (Fruit fly)| Length = 1214 Score = 34.3 bits (77), Expect = 0.58 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 168 PDREHHIHSKGRQGVAAGARLHQ-GQQGQVHDHPRHAQERPHVQAPRGQDKG 320 P ++ H +GRQG G + GQQ H+ R QE + Q P GQ +G Sbjct: 253 PGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQG 304 Score = 33.9 bits (76), Expect = 0.75 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 168 PDREHHIHSKGRQGVAAGARLH-QGQQGQVHDHPRHAQERPHVQAPRGQDKG 320 P ++ H +GRQG G + GQQ H R QE + Q P GQ +G Sbjct: 276 PGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQG 327 Score = 33.5 bits (75), Expect = 0.98 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 168 PDREHHIHSKGRQGVAAGARLHQ-GQQGQVHDHPRHAQERPHVQAPRGQDKG 320 P ++ H +GRQG G + GQQ H R QE + Q P GQ +G Sbjct: 138 PGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQG 189 Score = 32.7 bits (73), Expect = 1.7 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +3 Query: 189 HSKGRQGVAAGARLH-QGQQGQVHDHPRHAQERPHVQAPRGQDKG 320 H +GRQG G + GQQ H R QE + Q P GQ +G Sbjct: 306 HQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQG 350 Score = 32.3 bits (72), Expect = 2.2 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +3 Query: 189 HSKGRQGVAAGARLHQ-GQQGQVHDHPRHAQERPHVQAPRGQDKG 320 H +GRQG G + GQQ H R QE + Q P GQ +G Sbjct: 191 HQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQG 235
>O94408:LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 - Schizosaccharomyces| pombe (Fission yeast) Length = 96 Score = 32.7 bits (73), Expect = 1.7 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +1 Query: 97 VTVELKTGEVYRGSMIECEDNWNCQIENITF--TAKDGKVSQLEHVFIRGSRVRFM 258 VTVELK RG + + N ++ENI+ +K ++ ++ +FIRGS VR++ Sbjct: 15 VTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYV 70
>P38203:LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 - Saccharomyces cerevisiae| (Baker's yeast) Length = 95 Score = 32.3 bits (72), Expect = 2.2 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = +1 Query: 97 VTVELKTGEVYRGSMIECEDNWNCQIENITFT--AKDGKVSQLEHVFIRGSRVRFMII 264 V VELK +G++ + N +++NI+ T K + + ++FIRGS VR++ + Sbjct: 15 VVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYL 72
>Q60411:ADAM2_CAVPO ADAM 2 precursor - Cavia porcellus (Guinea pig)| Length = 735 Score = 32.0 bits (71), Expect = 2.9 Identities = 23/61 (37%), Positives = 31/61 (50%) Frame = +1 Query: 49 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 228 SLG P+K E +G +TV K V RGS +E E ++ IEN T+ + L H Sbjct: 13 SLGGPLKKYVENSGMQITVPEKIRSVKRGS-VESEVSYKIVIENTTYIVNLVRKMFLPHD 71 Query: 229 F 231 F Sbjct: 72 F 72
>Q9PUB8:KE4_DANRE Zinc transporter Slc39a7 - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 352 Score = 31.6 bits (70), Expect = 3.7 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +3 Query: 171 DREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQGV 329 + EHH+H G A H G +HDH HA + H G +K + V Sbjct: 63 EEEHHVHDHGHTHDHAHDHGHAHSHGDIHDH-GHAHKHGHAH-DHGAEKSKKV 113
>Q8FUL7:DNAA_COREF Chromosomal replication initiator protein dnaA - Corynebacterium| efficiens Length = 573 Score = 31.2 bits (69), Expect = 4.9 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 219 GARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 G + QGQQGQ HP + R H AP Q + Q Sbjct: 121 GPQSPQGQQGQQGQHPVQQEVRAHAPAPHQQGQHQ 155
>P20482:CNC_DROME Segmentation protein cap'n'collar - Drosophila melanogaster (Fruit| fly) Length = 1383 Score = 31.2 bits (69), Expect = 4.9 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +3 Query: 162 ELPDREHHIHSKGRQGVAAGARLHQGQQGQVHDHPRHAQERPHVQAPRGQDKGQ 323 + P H H Q V G Q QQ ++ P H Q++ H+Q+ + Q GQ Sbjct: 1325 QAPMHSHQSHGMQAQHVVGGMSQQQQQQSRL---PPHLQQQHHLQSQQQQPGGQ 1375
>P06719:KNOB_PLAFN Knob-associated histidine-rich protein precursor - Plasmodium| falciparum (isolate NF7 / Ghana) Length = 657 Score = 30.8 bits (68), Expect = 6.4 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Frame = +3 Query: 138 HDRVRGQLELPDREHHIHSKGRQGVAAGARLHQGQQGQ--VHDHPRHAQERPHVQAPRG 308 H + + + P + HH H G A ++HQ GQ H H H H Q P+G Sbjct: 72 HHQHQAPHQAPHQAHHHHHHGEVNHQA-PQVHQQVHGQDQAHHHHHHHHHHLHPQQPQG 129
>Q9XIE6:ALA3_ARATH Putative phospholipid-transporting ATPase 3 - Arabidopsis thaliana| (Mouse-ear cress) Length = 1213 Score = 30.4 bits (67), Expect = 8.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 769 HIN*Q*ASQEIIHCNDRASNEPSNLMFTANNSNTSSY 659 HI Q + ++CNDR SN+P + F N+ +T+ Y Sbjct: 27 HIQPQAPTYRTVYCNDRESNQP--VRFKGNSISTTKY 61 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 110,735,644 Number of extensions: 2153517 Number of successful extensions: 6715 Number of sequences better than 10.0: 35 Number of HSP's gapped: 6673 Number of HSP's successfully gapped: 46 Length of query: 265 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 154 Effective length of database: 70,239,694 Effective search space: 10816912876 Effective search space used: 10816912876 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
