ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf36c06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830132.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA003H01, full insert sequence Length = 872 Score = 424 bits (214), Expect = e-115 Identities = 325/362 (89%) Strand = Plus / Plus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 125 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 184 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 185 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 244 Query: 154 gacaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcg 213 |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||| || Sbjct: 245 gacaactggaactgccagctcgacaacatcaccttcaccgccaaggacggcaaggtctcc 304 Query: 214 cagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatg 273 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 305 cagctggagcacgtcttcatcagaggaagcagggtcaggttcatgatcatacccgacatg 364 Query: 274 ctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcc 333 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || || Sbjct: 365 ctcaagaacgcccccatgttcaagcgcctcgaggctaggattaggggtaaaggctcagct 424 Query: 334 atcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggt 393 || || || || || ||||| || ||||| |||||||| |||||||| | ||| |||||| Sbjct: 425 attggtgttggccgtggccgtgccgttgctatgcgtgctcgggctgctgctggtcgtggt 484 Query: 394 gg 395 || Sbjct: 485 gg 486
>ref|NM_001052134.1| Oryza sativa (japonica cultivar-group) Os02g0102700 (Os02g0102700) mRNA, complete cds Length = 926 Score = 424 bits (214), Expect = e-115 Identities = 325/362 (89%) Strand = Plus / Plus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 172 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 231 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 232 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 291 Query: 154 gacaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcg 213 |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||| || Sbjct: 292 gacaactggaactgccagctcgacaacatcaccttcaccgccaaggacggcaaggtctcc 351 Query: 214 cagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatg 273 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 352 cagctggagcacgtcttcatcagaggaagcagggtcaggttcatgatcatacccgacatg 411 Query: 274 ctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcc 333 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || || Sbjct: 412 ctcaagaacgcccccatgttcaagcgcctcgaggctaggattaggggtaaaggctcagct 471 Query: 334 atcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggt 393 || || || || || ||||| || ||||| |||||||| |||||||| | ||| |||||| Sbjct: 472 attggtgttggccgtggccgtgccgttgctatgcgtgctcgggctgctgctggtcgtggt 531 Query: 394 gg 395 || Sbjct: 532 gg 533
>dbj|AK103689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136G21, full insert sequence Length = 911 Score = 424 bits (214), Expect = e-115 Identities = 325/362 (89%) Strand = Plus / Plus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 173 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 232 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 233 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 292 Query: 154 gacaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcg 213 |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||| || Sbjct: 293 gacaactggaactgccagctcgacaacatcaccttcaccgccaaggacggcaaggtctcc 352 Query: 214 cagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatg 273 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 353 cagctggagcacgtcttcatcagaggaagcagggtcaggttcatgatcatacccgacatg 412 Query: 274 ctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcc 333 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || || Sbjct: 413 ctcaagaacgcccccatgttcaagcgcctcgaggctaggattaggggtaaaggctcagct 472 Query: 334 atcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggt 393 || || || || || ||||| || ||||| |||||||| |||||||| | ||| |||||| Sbjct: 473 attggtgttggccgtggccgtgccgttgctatgcgtgctcgggctgctgctggtcgtggt 532 Query: 394 gg 395 || Sbjct: 533 gg 534
>dbj|AK061558.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C12, full insert sequence Length = 907 Score = 424 bits (214), Expect = e-115 Identities = 325/362 (89%) Strand = Plus / Plus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 150 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 209 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 210 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 269 Query: 154 gacaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcg 213 |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||| || Sbjct: 270 gacaactggaactgccagctcgacaacatcaccttcaccgccaaggacggcaaggtctcc 329 Query: 214 cagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatg 273 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 330 cagctggagcacgtcttcatcagaggaagcagggtcaggttcatgatcatacccgacatg 389 Query: 274 ctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcc 333 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || || Sbjct: 390 ctcaagaacgcccccatgttcaagcgcctcgaggctaggattaggggtaaaggctcagct 449 Query: 334 atcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggt 393 || || || || || ||||| || ||||| |||||||| |||||||| | ||| |||||| Sbjct: 450 attggtgttggccgtggccgtgccgttgctatgcgtgctcgggctgctgctggtcgtggt 509 Query: 394 gg 395 || Sbjct: 510 gg 511
>dbj|AK061193.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F11, full insert sequence Length = 926 Score = 424 bits (214), Expect = e-115 Identities = 325/362 (89%) Strand = Plus / Plus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 172 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 231 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 232 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 291 Query: 154 gacaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcg 213 |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||| || Sbjct: 292 gacaactggaactgccagctcgacaacatcaccttcaccgccaaggacggcaaggtctcc 351 Query: 214 cagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatg 273 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 352 cagctggagcacgtcttcatcagaggaagcagggtcaggttcatgatcatacccgacatg 411 Query: 274 ctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcc 333 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || || Sbjct: 412 ctcaagaacgcccccatgttcaagcgcctcgaggctaggattaggggtaaaggctcagct 471 Query: 334 atcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggt 393 || || || || || ||||| || ||||| |||||||| |||||||| | ||| |||||| Sbjct: 472 attggtgttggccgtggccgtgccgttgctatgcgtgctcgggctgctgctggtcgtggt 531 Query: 394 gg 395 || Sbjct: 532 gg 533
>gb|AY108829.1| Zea mays PCO138115 mRNA sequence Length = 740 Score = 400 bits (202), Expect = e-108 Identities = 262/282 (92%) Strand = Plus / Plus Query: 39 gatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtggt 98 ||||||||||||||| || |||||||||||||||||||| ||||||||||| || || || Sbjct: 125 gatgagccgcagcctcggtatcccggtgaagctgctgcatgaggcggcgggccacgtcgt 184 Query: 99 gacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggacaa 158 ||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 185 cacggtcgagctcaagaccggcgaggtctaccgcggctccatggtcgagtgcgaggacaa 244 Query: 159 ctggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcagct 218 ||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 245 ctggaactgccagctcgaaaacatcaccttcacggcaaaggacggcaaggtgtcgcagct 304 Query: 219 ggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctcaa 278 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 305 ggagcacgtcttcatcagggggagcagggtcaggttcatgattatacccgacatgctcaa 364 Query: 279 gaacgcccccatgttcaagcgcctcgaggccaggataagggg 320 ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 365 gaacgccccaatgttcaagcgccttgaggccaggattagggg 406
>ref|NM_001056046.1| Oryza sativa (japonica cultivar-group) Os03g0240800 (Os03g0240800) mRNA, complete cds Length = 927 Score = 391 bits (197), Expect = e-105 Identities = 320/361 (88%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 128 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 187 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 188 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 247 Query: 155 acaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgc 214 ||||||||||||||||| |||| |||||||| ||||| || ||||| ||||||||||||| Sbjct: 248 acaactggaactgccagctcgacaacatcaccttcaccgccaaggatggcaaggtgtcgc 307 Query: 215 agctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgc 274 |||||||||||||||||||||| || ||||| || || || ||||| || || || |||| Sbjct: 308 agctggagcacgtcttcatcagaggaagcagagtgagatttatgattataccggatatgc 367 Query: 275 tcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcca 334 |||||||||| ||||||||||||||||| || || ||||| |||||||| || || || | Sbjct: 368 tcaagaacgcacccatgttcaagcgcctggaagcaaggattaggggcaaaggatcagcta 427 Query: 335 tcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggtg 394 | || |||||||| ||||| || ||||| ||||||||||||||||| | ||| ||||||| Sbjct: 428 ttggagtcgggcgtggccgtgcggttgcaatgcgtgcccgggctgctgctggtcgtggtg 487 Query: 395 g 395 | Sbjct: 488 g 488
>dbj|AK121552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033E14, full insert sequence Length = 910 Score = 391 bits (197), Expect = e-105 Identities = 320/361 (88%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 104 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 163 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 164 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 223 Query: 155 acaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgc 214 ||||||||||||||||| |||| |||||||| ||||| || ||||| ||||||||||||| Sbjct: 224 acaactggaactgccagctcgacaacatcaccttcaccgccaaggatggcaaggtgtcgc 283 Query: 215 agctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgc 274 |||||||||||||||||||||| || ||||| || || || ||||| || || || |||| Sbjct: 284 agctggagcacgtcttcatcagaggaagcagagtgagatttatgattataccggatatgc 343 Query: 275 tcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcca 334 |||||||||| ||||||||||||||||| || || ||||| |||||||| || || || | Sbjct: 344 tcaagaacgcacccatgttcaagcgcctggaagcaaggattaggggcaaaggatcagcta 403 Query: 335 tcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggtg 394 | || |||||||| ||||| || ||||| ||||||||||||||||| | ||| ||||||| Sbjct: 404 ttggagtcgggcgtggccgtgcggttgcaatgcgtgcccgggctgctgctggtcgtggtg 463 Query: 395 g 395 | Sbjct: 464 g 464
>dbj|AK061178.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D01, full insert sequence Length = 927 Score = 391 bits (197), Expect = e-105 Identities = 320/361 (88%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 128 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 187 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 188 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 247 Query: 155 acaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgc 214 ||||||||||||||||| |||| |||||||| ||||| || ||||| ||||||||||||| Sbjct: 248 acaactggaactgccagctcgacaacatcaccttcaccgccaaggatggcaaggtgtcgc 307 Query: 215 agctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgc 274 |||||||||||||||||||||| || ||||| || || || ||||| || || || |||| Sbjct: 308 agctggagcacgtcttcatcagaggaagcagagtgagatttatgattataccggatatgc 367 Query: 275 tcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcca 334 |||||||||| ||||||||||||||||| || || ||||| |||||||| || || || | Sbjct: 368 tcaagaacgcacccatgttcaagcgcctggaagcaaggattaggggcaaaggatcagcta 427 Query: 335 tcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggtg 394 | || |||||||| ||||| || ||||| ||||||||||||||||| | ||| ||||||| Sbjct: 428 ttggagtcgggcgtggccgtgcggttgcaatgcgtgcccgggctgctgctggtcgtggtg 487 Query: 395 g 395 | Sbjct: 488 g 488
>dbj|AK059292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E05, full insert sequence Length = 750 Score = 391 bits (197), Expect = e-105 Identities = 320/361 (88%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 103 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 162 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 163 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 222 Query: 155 acaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgc 214 ||||||||||||||||| |||| |||||||| ||||| || ||||| ||||||||||||| Sbjct: 223 acaactggaactgccagctcgacaacatcaccttcaccgccaaggatggcaaggtgtcgc 282 Query: 215 agctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgc 274 |||||||||||||||||||||| || ||||| || || || ||||| || || || |||| Sbjct: 283 agctggagcacgtcttcatcagaggaagcagagtgagatttatgattataccggatatgc 342 Query: 275 tcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcca 334 |||||||||| ||||||||||||||||| || || ||||| |||||||| || || || | Sbjct: 343 tcaagaacgcacccatgttcaagcgcctggaagcaaggattaggggcaaaggatcagcta 402 Query: 335 tcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggtg 394 | || |||||||| ||||| || ||||| ||||||||||||||||| | ||| ||||||| Sbjct: 403 ttggagtcgggcgtggccgtgcggttgcaatgcgtgcccgggctgctgctggtcgtggtg 462 Query: 395 g 395 | Sbjct: 463 g 463
>gb|AY106245.1| Zea mays PCO068141 mRNA sequence Length = 730 Score = 283 bits (143), Expect = 5e-73 Identities = 293/343 (85%) Strand = Plus / Plus Query: 38 agatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtgg 97 |||||||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||||| Sbjct: 92 agatgagccggagcctggggatcccggtgaagttgctccatgaggcagcgggtcatgtgg 151 Query: 98 tgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggaca 157 ||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||| | Sbjct: 152 tgacggtggagctcaagaccggcgaagtgtaccgggggtccatggtcgagtgcgaggata 211 Query: 158 actggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcagc 217 ||||||| |||||| |||||||||| || ||||| || ||||| || ||||| ||||||| Sbjct: 212 actggaattgccagctcgagaacattaccttcaccgccaaggatgggaaggtttcgcagc 271 Query: 218 tggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctca 277 ||||||||||||||||||| || ||||| || || || ||||| || || || ||||||| Sbjct: 272 tggagcacgtcttcatcagaggaagcagagtgagatttatgattatacctgatatgctca 331 Query: 278 agaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggccatcg 337 ||||||| ||||||||||||||| | || || || || |||||||| || || || || | Sbjct: 332 agaacgctcccatgttcaagcgcttggaagcgagaattaggggcaaaggatcagctattg 391 Query: 338 gcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgc 380 | || ||||| || || || ||||| |||||||| |||||||| Sbjct: 392 gagttgggcgtggacgtgcagttgcaatgcgtgctcgggctgc 434 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 gcgcgcctcccgtgaggaggtagat 449 |||||||||| |||||||||||||| Sbjct: 470 gcgcgcctcctgtgaggaggtagat 494
>gb|DQ244510.1| Zea mays clone 8689 mRNA sequence Length = 762 Score = 281 bits (142), Expect = 2e-72 Identities = 347/415 (83%), Gaps = 9/415 (2%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||| || | Sbjct: 210 ggaagatgagccggagcctggggatcccggtgaagttgctccatgaggcagcgggtcacg 269 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 |||||||||||||||||||||||||||| || |||||||| || || |||||||||||| Sbjct: 270 tggtgacggtggagctcaagaccggcgaagtgtaccgggggtcattggtcgagtgcgagg 329 Query: 155 acaactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgc 214 | |||||||| |||||| |||||||||| || ||||| || ||||| || ||||| |||| Sbjct: 330 ataactggaattgccagctcgagaacataaccttcactgccaaggatgggaaggtttcgc 389 Query: 215 agctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgc 274 |||||||||||||||||||||| || ||||| || || || ||||| || || || |||| Sbjct: 390 agctggagcacgtcttcatcagaggaagcagagtgagatttatgattatacctgatatgc 449 Query: 275 tcaagaacgcccccatgttcaagcgcctcgaggccaggataaggggcaaggggtcggcca 334 |||||||||| ||||||||||||||| | || || ||||| |||||||| || || || | Sbjct: 450 tcaagaacgctcccatgttcaagcgcttggaagcgaggattaggggcaaaggatcagcta 509 Query: 335 tcggcgtcgggcgcggccgcgctgttgccatgcgtgcccgggctgccggtggacgtggtg 394 | || || || || || || |||||||| |||||||| |||||||| | ||| ||||||| Sbjct: 510 ttggagttggtcgtggacgtgctgttgcaatgcgtgctcgggctgctgctggtcgtggtg 569 Query: 395 gcggcccccctgttggaggaggacgaggtggcgcgcctcccgtgaggaggtagat 449 | || ||||||| |||||||| |||||||||| |||||||||||||| Sbjct: 570 gtgg---tcctgttg------gacgaggtagcgcgcctcctgtgaggaggtagat 615
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 232 bits (117), Expect = 2e-57 Identities = 147/157 (93%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 58076 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 58135 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 58136 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 58195 Query: 155 acaactggaactgccagatcgagaacatcacattcac 191 ||||||||||||||||| |||| |||||||| ||||| Sbjct: 58196 acaactggaactgccagctcgacaacatcaccttcac 58232 Score = 73.8 bits (37), Expect = 8e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 197 aggacggcaaggtgtcgcagctggagcacgtcttcatcaggggcagcag 245 |||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 58356 aggatggcaaggtgtcgcagctggagcacgtcttcatcagaggaagcag 58404 Score = 58.0 bits (29), Expect = 5e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 271 atgctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggg 319 |||||||||||||| ||||||||||||||||| || || ||||| |||| Sbjct: 58509 atgctcaagaacgcacccatgttcaagcgcctggaagcaaggattaggg 58557 Score = 42.1 bits (21), Expect = 3.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 340 gtcgggcgcggccgcgctgttgccatgcgtgcccggg 376 |||||||| ||||| || ||||| ||||||||||||| Sbjct: 58666 gtcgggcgtggccgtgcggttgcaatgcgtgcccggg 58702
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 232 bits (117), Expect = 2e-57 Identities = 147/157 (93%) Strand = Plus / Plus Query: 35 ggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatg 94 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 7417356 ggaagatgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacg 7417415 Query: 95 tggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgagg 154 ||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||||| Sbjct: 7417416 tggtgacggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgagg 7417475 Query: 155 acaactggaactgccagatcgagaacatcacattcac 191 ||||||||||||||||| |||| |||||||| ||||| Sbjct: 7417476 acaactggaactgccagctcgacaacatcaccttcac 7417512 Score = 73.8 bits (37), Expect = 8e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 197 aggacggcaaggtgtcgcagctggagcacgtcttcatcaggggcagcag 245 |||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 7417636 aggatggcaaggtgtcgcagctggagcacgtcttcatcagaggaagcag 7417684 Score = 58.0 bits (29), Expect = 5e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 271 atgctcaagaacgcccccatgttcaagcgcctcgaggccaggataaggg 319 |||||||||||||| ||||||||||||||||| || || ||||| |||| Sbjct: 7417789 atgctcaagaacgcacccatgttcaagcgcctggaagcaaggattaggg 7417837 Score = 42.1 bits (21), Expect = 3.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 340 gtcgggcgcggccgcgctgttgccatgcgtgcccggg 376 |||||||| ||||| || ||||| ||||||||||||| Sbjct: 7417946 gtcgggcgtggccgtgcggttgcaatgcgtgcccggg 7417982
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 137926 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 137867 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 137866 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 137807 Query: 154 gacaactggaactgccagatcgagaacatcacattcac 191 |||||||||||||||||| |||| |||||||| ||||| Sbjct: 137806 gacaactggaactgccagctcgacaacatcaccttcac 137769 Score = 188 bits (95), Expect = 2e-44 Identities = 116/123 (94%) Strand = Plus / Minus Query: 197 aggacggcaaggtgtcgcagctggagcacgtcttcatcaggggcagcagggtcaggttca 256 ||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||| Sbjct: 137680 aggacggcaaggtctcccagctggagcacgtcttcatcagaggaagcagggtcaggttca 137621 Query: 257 tgatcatccccgacatgctcaagaacgcccccatgttcaagcgcctcgaggccaggataa 316 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 137620 tgatcatacccgacatgctcaagaacgcccccatgttcaagcgcctcgaggctaggatta 137561 Query: 317 ggg 319 ||| Sbjct: 137560 ggg 137558 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 gaggacgaggtggcgcgcctc 433 ||||||||||||||||||||| Sbjct: 19482299 gaggacgaggtggcgcgcctc 19482279
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 132535 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 132476 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 132475 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 132416 Query: 154 gacaactggaactgccagatcgagaacatcacattcac 191 |||||||||||||||||| |||| |||||||| ||||| Sbjct: 132415 gacaactggaactgccagctcgacaacatcaccttcac 132378 Score = 188 bits (95), Expect = 2e-44 Identities = 116/123 (94%) Strand = Plus / Minus Query: 197 aggacggcaaggtgtcgcagctggagcacgtcttcatcaggggcagcagggtcaggttca 256 ||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||| Sbjct: 132289 aggacggcaaggtctcccagctggagcacgtcttcatcagaggaagcagggtcaggttca 132230 Query: 257 tgatcatccccgacatgctcaagaacgcccccatgttcaagcgcctcgaggccaggataa 316 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 132229 tgatcatacccgacatgctcaagaacgcccccatgttcaagcgcctcgaggctaggatta 132170 Query: 317 ggg 319 ||| Sbjct: 132169 ggg 132167
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 34 aggaagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcat 93 |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 86953 aggaagatgagccgcagccttggtatcccagtgaagctgctgcacgaggcggcggggcac 86894 Query: 94 gtggtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgag 153 |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct: 86893 gtggtgaccgtggagctcaagaccggcgaggtgtaccgcggctccatggtcgagtgcgag 86834 Query: 154 gacaactggaactgccagatcgagaacatcacattcac 191 |||||||||||||||||| |||| |||||||| ||||| Sbjct: 86833 gacaactggaactgccagctcgacaacatcaccttcac 86796 Score = 188 bits (95), Expect = 2e-44 Identities = 116/123 (94%) Strand = Plus / Minus Query: 197 aggacggcaaggtgtcgcagctggagcacgtcttcatcaggggcagcagggtcaggttca 256 ||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||| Sbjct: 86707 aggacggcaaggtctcccagctggagcacgtcttcatcagaggaagcagggtcaggttca 86648 Query: 257 tgatcatccccgacatgctcaagaacgcccccatgttcaagcgcctcgaggccaggataa 316 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 86647 tgatcatacccgacatgctcaagaacgcccccatgttcaagcgcctcgaggctaggatta 86588 Query: 317 ggg 319 ||| Sbjct: 86587 ggg 86585
>gb|DQ115404.1| Malus x domestica starch branching enzyme I (SbeI) gene, complete cds Length = 8078 Score = 105 bits (53), Expect = 2e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 61 ccggtgaagctgctgcacgaggcggcggggcatgtggtgacggtggagctcaagaccggc 120 ||||||||||| || ||||||||| | ||||| |||||||||||||||||||||| ||| Sbjct: 1129 ccggtgaagcttcttcacgaggcgtcagggcacgtggtgacggtggagctcaagagcggt 1070 Query: 121 gaggtctaccggggctccatgatcgagtgcgaggacaactggaactgccagatcgagaac 180 ||| | ||| | || |||| |||||||||||||||| |||||||| ||| |||||||| Sbjct: 1069 gagctttacagaggaagcatggtcgagtgcgaggacaattggaactgtcagctcgagaac 1010 Query: 181 atcac 185 ||||| Sbjct: 1009 atcac 1005 Score = 42.1 bits (21), Expect = 3.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 250 aggttcatgatcatccccgacatgctcaagaacgcccccatgttcaagcgcct 302 ||||| ||| |||| || |||||||| ||||| || || |||||||||||||| Sbjct: 89 aggtttatggtcatacctgacatgctaaagaatgctccaatgttcaagcgcct 37
>emb|CT986475.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 686 Score = 103 bits (52), Expect = 9e-19 Identities = 142/172 (82%) Strand = Plus / Plus Query: 143 tcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaaggacg 202 |||||||||||||||||||||| |||||| |||||| |||||| | ||| || ||||| | Sbjct: 5 tcgagtgcgaggacaactggaattgccagctcgagagcatcacttacaccgccaaggatg 64 Query: 203 gcaaggtgtcgcagctggagcacgtcttcatcaggggcagcagggtcaggttcatgatca 262 | || || || ||||| ||||| || || || ||||| || | |||||||||||| | | Sbjct: 65 gaaaagtctcacagcttgagcatgtatttattaggggtagtaaagtcaggttcatggtaa 124 Query: 263 tccccgacatgctcaagaacgcccccatgttcaagcgcctcgaggccaggat 314 | || |||||||| |||||||| || |||||||||||||| ||| ||||||| Sbjct: 125 taccagacatgctgaagaacgctccaatgttcaagcgcctggagtccaggat 176
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 103 bits (52), Expect = 9e-19 Identities = 119/140 (85%), Gaps = 6/140 (4%) Strand = Plus / Plus Query: 430 cctcccgtgaggaggtagatgatgtgagccgagccactgtgtggttggggaaggaagtcg 489 ||||| || ||||| |||| ||||||||| |||| |||| |||| | ||||| |||||| Sbjct: 694 cctcctgttaggagatagaggatgtgagctaagccgctgtctggtcgaggaagaaagtcg 753 Query: 490 ctgtctttactagcgaagcgaaacaaactgctgcggcagccatgcttgtgagctttatga 549 |||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct: 754 ttgtctttactggcgaa-----acaaattgctgcggcagccatgcttgtgagc-ttatga 807 Query: 550 tgtgcctctagtttagtttg 569 |||| ||||||||||||||| Sbjct: 808 tgtgtctctagtttagtttg 827 Score = 73.8 bits (37), Expect = 8e-10 Identities = 90/103 (87%), Gaps = 6/103 (5%) Strand = Plus / Plus Query: 584 cggcagccatgcttgtgagctttatgatgtgcctctagtttagtttggttgtttatgcga 643 |||||||||||||||||||||| |||||||| ||||||||||||||| | |||| || || Sbjct: 782 cggcagccatgcttgtgagctt-atgatgtgtctctagtttagtttgttagtttctgtga 840 Query: 644 accgattttctctctgtatg-atgatgtattgctgttgttagc 685 |||| |||||| || ||| |||||||||||||| ||||||| Sbjct: 841 accg---ttctctatg-atgtatgatgtattgctgctgttagc 879 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 721 tgtcattgcaatggataatctcttgtgaagcttactg 757 |||||||| |||||| |||||||||||||||||||| Sbjct: 926 tgtcattggcatggattatctcttgtgaagcttactg 962
>gb|AC189318.1| Brassica rapa subsp. pekinensis clone KBrB036G18, complete sequence Length = 128207 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 38 agatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtgg 97 |||||||||| ||| ||||||| || |||||||| || |||||| || |||||||| | Sbjct: 101304 agatgagccggagcttggggataccagtgaagcttcttcacgagtcgtcggggcatacag 101363 Query: 98 tgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggaca 157 ||||||||||||| |||| ||||||| | ||| | || | || ||||||| ||||| | Sbjct: 101364 tgacggtggagctgaagagcggcgagctgtacagaggaaacctgctcgagtgtgaggata 101423 Query: 158 actggaactgccagatcgagaacatcac 185 |||||||||||||| ||||||||||||| Sbjct: 101424 actggaactgccagctcgagaacatcac 101451 Score = 42.1 bits (21), Expect = 3.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 205 aaggtgtcgcagctggagcacgtcttcatcaggggcagcagggtcaggt 253 ||||| || ||||| ||||| ||||||||||| ||||||| ||||||| Sbjct: 101886 aaggtatcacagcttgagcatgtcttcatcagaggcagcaaagtcaggt 101934
>ref|NM_106280.2| Arabidopsis thaliana unknown protein (AT1G76300) mRNA, complete cds Length = 743 Score = 63.9 bits (32), Expect = 8e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaa 197 |||||||||||| ||||| || |||||||| ||| ||||||||||||| | || || || Sbjct: 172 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcacctatacggccaa 231 Query: 198 ggacggcaaggtgtcgcagctggagcacgtcttcat 233 ||| || ||||| || ||||| ||||| |||||||| Sbjct: 232 ggatggtaaggtatcacagcttgagcatgtcttcat 267
>gb|AY054149.1| Arabidopsis thaliana At1g76300/F15M4_20 mRNA, complete cds Length = 387 Score = 63.9 bits (32), Expect = 8e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaa 197 |||||||||||| ||||| || |||||||| ||| ||||||||||||| | || || || Sbjct: 99 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcacctatacggccaa 158 Query: 198 ggacggcaaggtgtcgcagctggagcacgtcttcat 233 ||| || ||||| || ||||| ||||| |||||||| Sbjct: 159 ggatggtaaggtatcacagcttgagcatgtcttcat 194
>gb|AY087251.1| Arabidopsis thaliana clone 33319 mRNA, complete sequence Length = 739 Score = 63.9 bits (32), Expect = 8e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaa 197 |||||||||||| ||||| || |||||||| ||| ||||||||||||| | || || || Sbjct: 172 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcacctatacggccaa 231 Query: 198 ggacggcaaggtgtcgcagctggagcacgtcttcat 233 ||| || ||||| || ||||| ||||| |||||||| Sbjct: 232 ggatggtaaggtatcacagcttgagcatgtcttcat 267
>gb|AF380651.1|AF380651 Arabidopsis thaliana At1g76300/F15M4_20 mRNA, complete cds Length = 685 Score = 63.9 bits (32), Expect = 8e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaa 197 |||||||||||| ||||| || |||||||| ||| ||||||||||||| | || || || Sbjct: 114 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcacctatacggccaa 173 Query: 198 ggacggcaaggtgtcgcagctggagcacgtcttcat 233 ||| || ||||| || ||||| ||||| |||||||| Sbjct: 174 ggatggtaaggtatcacagcttgagcatgtcttcat 209
>ref|NM_101909.2| Arabidopsis thaliana unknown protein (AT1G20580) mRNA, complete cds Length = 757 Score = 61.9 bits (31), Expect = 3e-06 Identities = 205/263 (77%) Strand = Plus / Plus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 89 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 148 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 149 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 208 Query: 157 aactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcag 216 ||||||||||| ||| ||||| | || || | || || ||||| || ||||| || ||| Sbjct: 209 aactggaactgtcagctcgaggatattacttataccgccaaggatggtaaggtatcacag 268 Query: 217 ctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctc 276 || ||||| |||||||| | ||||| | |||||||| ||| |||| || ||||| ||| Sbjct: 269 cttgagcatgtcttcattcgaggcagtaaagtcaggtttatggtcataccagacattctc 328 Query: 277 aagaacgcccccatgttcaagcg 299 || | || || ||||||||||| Sbjct: 329 aaacatgctccaatgttcaagcg 351
>gb|AF412086.1|AF412086 Arabidopsis thaliana At1g20580/F2D10_6 mRNA, complete cds Length = 711 Score = 61.9 bits (31), Expect = 3e-06 Identities = 205/263 (77%) Strand = Plus / Plus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 89 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 148 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 149 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 208 Query: 157 aactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcag 216 ||||||||||| ||| ||||| | || || | || || ||||| || ||||| || ||| Sbjct: 209 aactggaactgtcagctcgaggatattacttataccgccaaggatggtaaggtatcacag 268 Query: 217 ctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctc 276 || ||||| |||||||| | ||||| | |||||||| ||| |||| || ||||| ||| Sbjct: 269 cttgagcatgtcttcattcgaggcagtaaagtcaggtttatggtcataccagacattctc 328 Query: 277 aagaacgcccccatgttcaagcg 299 || | || || ||||||||||| Sbjct: 329 aaacatgctccaatgttcaagcg 351
>gb|AY086797.1| Arabidopsis thaliana clone 27792 mRNA, complete sequence Length = 693 Score = 61.9 bits (31), Expect = 3e-06 Identities = 205/263 (77%) Strand = Plus / Plus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 89 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 148 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 149 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 208 Query: 157 aactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcag 216 ||||||||||| ||| ||||| | || || | || || ||||| || ||||| || ||| Sbjct: 209 aactggaactgtcagctcgaggatattacttataccgccaaggatggtaaggtatcacag 268 Query: 217 ctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctc 276 || ||||| |||||||| | ||||| | |||||||| ||| |||| || ||||| ||| Sbjct: 269 cttgagcatgtcttcattcgaggcagtaaagtcaggtttatggtcataccagacattctc 328 Query: 277 aagaacgcccccatgttcaagcg 299 || | || || ||||||||||| Sbjct: 329 aaacatgctccaatgttcaagcg 351
>emb|BX814023.1|CNS0ACB7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 668 Score = 61.9 bits (31), Expect = 3e-06 Identities = 205/263 (77%) Strand = Plus / Plus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 64 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 123 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 124 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 183 Query: 157 aactggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcag 216 ||||||||||| ||| ||||| | || || | || || ||||| || ||||| || ||| Sbjct: 184 aactggaactgtcagctcgaggatattacttataccgccaaggatggtaaggtatcacag 243 Query: 217 ctggagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctc 276 || ||||| |||||||| | ||||| | |||||||| ||| |||| || ||||| ||| Sbjct: 244 cttgagcatgtcttcattcgaggcagtaaagtcaggtttatggtcataccagacattctc 303 Query: 277 aagaacgcccccatgttcaagcg 299 || | || || ||||||||||| Sbjct: 304 aaacatgctccaatgttcaagcg 326
>ref|XM_967490.1| PREDICTED: Tribolium castaneum similar to Small nuclear ribonucleoprotein SM D3 (snRNP core protein D3) (SM-D3) (LOC661326), mRNA Length = 414 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 248 tcaggttcatgatcatccccgacatgctcaagaacgcccccatgttcaag 297 |||||||| |||| | ||||||||||| ||||||||||||||||||||| Sbjct: 203 tcaggttcttgatactgcccgacatgctaaagaacgcccccatgttcaag 252
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence Length = 143879 Score = 58.0 bits (29), Expect = 5e-05 Identities = 113/141 (80%) Strand = Plus / Plus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 19434 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 19493 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 19494 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 19553 Query: 157 aactggaactgccagatcgag 177 ||||||||||| ||| ||||| Sbjct: 19554 aactggaactgtcagctcgag 19574
>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence Length = 99231 Score = 58.0 bits (29), Expect = 5e-05 Identities = 113/141 (80%) Strand = Plus / Minus Query: 37 aagatgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtg 96 ||||||||||| || |||| || ||||||||||| || |||||||| | || ||| | Sbjct: 35681 aagatgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatc 35622 Query: 97 gtgacggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggac 156 |||||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| Sbjct: 35621 gtgacggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggat 35562 Query: 157 aactggaactgccagatcgag 177 ||||||||||| ||| ||||| Sbjct: 35561 aactggaactgtcagctcgag 35541
>gb|AY093974.1| Arabidopsis thaliana At1g20580/F2D10_6 mRNA, complete cds Length = 396 Score = 56.0 bits (28), Expect = 2e-04 Identities = 202/260 (77%) Strand = Plus / Plus Query: 40 atgagccgcagcctggggatcccggtgaagctgctgcacgaggcggcggggcatgtggtg 99 |||||||| || |||| || ||||||||||| || |||||||| | || ||| | ||| Sbjct: 1 atgagccgaagtttgggaataccggtgaagcttcttcacgaggcctcaggtcatatcgtg 60 Query: 100 acggtggagctcaagaccggcgaggtctaccggggctccatgatcgagtgcgaggacaac 159 ||||||||||| |||| ||||||| | ||| | || ||||| ||||| ||||| ||| Sbjct: 61 acggtggagctaaagagcggcgagctttacagaggaagtatgattgagtgtgaggataac 120 Query: 160 tggaactgccagatcgagaacatcacattcacagcaaaggacggcaaggtgtcgcagctg 219 |||||||| ||| ||||| | || || | || || ||||| || ||||| || ||||| Sbjct: 121 tggaactgtcagctcgaggatattacttataccgccaaggatggtaaggtatcacagctt 180 Query: 220 gagcacgtcttcatcaggggcagcagggtcaggttcatgatcatccccgacatgctcaag 279 ||||| |||||||| | ||||| | |||||||| ||| |||| || ||||| ||||| Sbjct: 181 gagcatgtcttcattcgaggcagtaaagtcaggtttatggtcataccagacattctcaaa 240 Query: 280 aacgcccccatgttcaagcg 299 | || || ||||||||||| Sbjct: 241 catgctccaatgttcaagcg 260
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence Length = 94487 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcac 185 |||||||||||| ||||| || |||||||| ||| ||||||||||||| Sbjct: 79406 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcac 79359
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcac 185 |||||||||||| ||||| || |||||||| ||| ||||||||||||| Sbjct: 82233 catgatcgagtgtgaggataattggaactgtcagctcgagaacatcac 82280
>gb|AC189346.1| Brassica rapa subsp. pekinensis clone KBrB042N05, complete sequence Length = 96650 Score = 48.1 bits (24), Expect = 0.049 Identities = 42/48 (87%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcac 185 |||||||||||| ||||| ||||||||||| ||| |||| ||||||| Sbjct: 75956 catgatcgagtgtgaggataactggaactgtcagctcgaagacatcac 76003
>gb|AE012518.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 426 of 460 of the complete genome Length = 10619 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 78 cgaggcggcggggcatgtggtgac 101 |||||||||||||||||||||||| Sbjct: 10466 cgaggcggcggggcatgtggtgac 10443
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 78 cgaggcggcggggcatgtggtgac 101 |||||||||||||||||||||||| Sbjct: 4792970 cgaggcggcggggcatgtggtgac 4792947
>emb|BX818469.1|CNS0AB0M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZE01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 721 Score = 48.1 bits (24), Expect = 0.049 Identities = 78/96 (81%) Strand = Plus / Plus Query: 138 catgatcgagtgcgaggacaactggaactgccagatcgagaacatcacattcacagcaaa 197 ||||||||||| |||| || |||||||| ||| ||||||||||||| | || || || Sbjct: 146 catgatcgagttttaggataattggaactgtcagctcgagaacatcacctatacggccaa 205 Query: 198 ggacggcaaggtgtcgcagctggagcacgtcttcat 233 ||| || ||||| || ||||| ||||| |||||||| Sbjct: 206 ggatggtaaggtatcacagcttgagcatgtcttcat 241
>emb|AM286690.1| Alcanivorax borkumensis SK2, complete genome Length = 3120143 Score = 44.1 bits (22), Expect = 0.76 Identities = 25/26 (96%) Strand = Plus / Minus Query: 374 gggctgccggtggacgtggtggcggc 399 |||||||||||||||||||| ||||| Sbjct: 1875230 gggctgccggtggacgtggtcgcggc 1875205
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 ggcgtcgggcgcggccgcgctg 358 |||||||||||||||||||||| Sbjct: 6481414 ggcgtcgggcgcggccgcgctg 6481393
>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence Length = 138094 Score = 44.1 bits (22), Expect = 0.76 Identities = 88/110 (80%) Strand = Plus / Minus Query: 61 ccggtgaagctgctgcacgaggcggcggggcatgtggtgacggtggagctcaagaccggc 120 ||||||||||| || |||||||| | || || || || || ||||| || |||| |||| Sbjct: 44033 ccggtgaagctcctccacgaggcctccggccacgtcgtcacagtggaactaaagagcggc 43974 Query: 121 gaggtctaccggggctccatgatcgagtgcgaggacaactggaactgcca 170 || ||||| | ||| |||||| ||||| ||||| |||||||||||||| Sbjct: 43973 gaactctacagaggcaacatgattgagtgtgaggataactggaactgcca 43924
>gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosphate dehydrogenase homolog (gapdh) gene, complete cds; and phosphoglycerate kinase gene, partial cds Length = 2530 Score = 44.1 bits (22), Expect = 0.76 Identities = 25/26 (96%) Strand = Plus / Plus Query: 375 ggctgccggtggacgtggtggcggcc 400 |||||||||||||| ||||||||||| Sbjct: 2179 ggctgccggtggacatggtggcggcc 2204
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 atgatcatccccgacatgctc 276 ||||||||||||||||||||| Sbjct: 3331628 atgatcatccccgacatgctc 3331608 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 gctgccggtggacgtggtggc 396 ||||||||||||||||||||| Sbjct: 4162877 gctgccggtggacgtggtggc 4162857
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 376 gctgccggtggacgtggtggcggcc 400 |||||||||||||||||||| |||| Sbjct: 622011 gctgccggtggacgtggtggtggcc 622035
>ref|NM_001053551.1| Oryza sativa (japonica cultivar-group) Os02g0529800 (Os02g0529800) mRNA, complete cds Length = 1542 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 gaggacgaggtggcgcgcctc 433 ||||||||||||||||||||| Sbjct: 457 gaggacgaggtggcgcgcctc 477
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 376 gctgccggtggacgtggtggcggcc 400 |||||||||||||||||||| |||| Sbjct: 612036 gctgccggtggacgtggtggtggcc 612060
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 gctgccggtggacgtggtggcggcc 400 |||||||||||||||||||| |||| Sbjct: 6589764 gctgccggtggacgtggtggtggcc 6589740
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cggtgaagctgctgcacgagg 82 ||||||||||||||||||||| Sbjct: 1708210 cggtgaagctgctgcacgagg 1708190
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 gaggacgaggtggcgcgcctc 433 ||||||||||||||||||||| Sbjct: 99826 gaggacgaggtggcgcgcctc 99806
>gb|AY111673.1| Zea mays CL15068_1 mRNA sequence Length = 630 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 308 ccaggataaggggcaaggggtcggc 332 |||||| |||||||||||||||||| Sbjct: 409 ccaggagaaggggcaaggggtcggc 433
>gb|AC005850.1| Arabidopsis thaliana chromosome I BAC T25B24 genomic sequence, complete sequence Length = 84432 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 613 tgcctctagtttagtttggtt 633 ||||||||||||||||||||| Sbjct: 28963 tgcctctagtttagtttggtt 28943 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 552 tgcctctagtttagtttggtt 572 ||||||||||||||||||||| Sbjct: 28963 tgcctctagtttagtttggtt 28943 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 126,359,759 Number of extensions: 6608594 Number of successful extensions: 139500 Number of sequences better than 10.0: 52 Number of HSP's gapped: 139491 Number of HSP's successfully gapped: 76 Length of query: 796 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 774 Effective length of database: 18,508,616,841 Effective search space: 14325669434934 Effective search space used: 14325669434934 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
