ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf35b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT830423.1| Oryza sativa (indica cultivar-group) cDNA clone:... 660 0.0
2ref|NM_001072049.1| Oryza sativa (japonica cultivar-group) Os10g... 652 0.0
3dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 652 0.0
4dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 652 0.0
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 359 2e-95
6gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 359 2e-95
7emb|CT832102.1| Oryza sativa (indica cultivar-group) cDNA clone:... 309 1e-80
8gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 50 0.022
9emb|CT830042.1| Oryza sativa (indica cultivar-group) cDNA clone:... 48 0.088
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.088
11dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.088
12dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.088
13emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 48 0.088
14gb|AY107177.1| Zea mays PCO111128 mRNA sequence 46 0.35
15ref|NM_001065467.1| Oryza sativa (japonica cultivar-group) Os07g... 44 1.4
16gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, comple... 44 1.4
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.4
18dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 44 1.4
19dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 1.4
20dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 44 1.4
21gb|CP000454.1| Arthrobacter sp. FB24, complete genome 42 5.4
22emb|CR855213.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 5.4
23ref|NM_001063151.1| Oryza sativa (japonica cultivar-group) Os06g... 42 5.4
24gb|AC187106.2| Gallus gallus BAC clone CH261-148O18 from chromos... 42 5.4
25emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 5.4
26gb|BT017396.1| Zea mays clone EL01N0328C04.c mRNA sequence 42 5.4
27gb|U97551.1| Caenorhabditis elegans cosmid T01B10, complete sequ... 42 5.4
28gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone... 42 5.4
29gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, co... 42 5.4
30gb|AC146452.3| Pan troglodytes BAC clone CH251-483N3 from Y, com... 42 5.4
31gb|AF126011.1| Antheraea mylitta mariner transposon Anm3.2 trans... 42 5.4
32gb|AC078794.13| Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cance... 42 5.4
33dbj|AK044782.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 5.4
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.4
35emb|AL078646.29|HSJ709L21 Human DNA sequence from clone RP4-709L... 42 5.4
36emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 42 5.4
37emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4,... 42 5.4
38dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 5.4
39gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y... 42 5.4
40dbj|BS000593.2| Pan troglodytes chromosome Y clone:PTB-006C19, c... 42 5.4
41dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, c... 42 5.4
42dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.4
43emb|BX004869.13| Zebrafish DNA sequence from clone CH211-69E21 i... 42 5.4
44gb|AF192975.1|AF192975 Oryza sativa unknown gene 42 5.4
45gb|AC148120.4| Saimiri boliviensis boliviensis clone CH254-165N1... 42 5.4
46emb|AL606977.28| Mouse DNA sequence from clone RP23-284L6 on chr... 42 5.4

>emb|CT830423.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125J07, full
            insert sequence
          Length = 1282
 Score =  660 bits (333), Expect = 0.0
 Identities = 769/913 (84%), Gaps = 6/913 (0%)
 Strand = Plus / Plus

                                                                        
Query: 173  tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
            |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 120  tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 178

                                                                        
Query: 233  taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
              |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 179  --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 236

                                                                        
Query: 293  aagtttttccttgacatccgttaatttccccgctccggcaaccggagccaagggtccaat 352
            ||||||||| ||  | ||||||||||| || | ||| ||||  |||| ||||||||||||
Sbjct: 237  aagtttttcattctcgtccgttaattttcctgttcctgcaagaggagacaagggtccaat 296

                                                                        
Query: 353  tttcgaagacggacccaactttgacacggcatttcgagttttccacggcagagacggggt 412
            ||| ||||| |||||||| ||||||| |||||||||||||||||| |||  ||| |||||
Sbjct: 297  ttttgaagatggacccaattttgacatggcatttcgagttttccatggccaagatggggt 356

                                                                        
Query: 413  tgttccgctttcagaaggagcctttgcacatattgagaagcctctgccaaagcccactcc 472
            |||||| |||||| ||||| | ||||  |   ||||||||||  |||||||||||| |||
Sbjct: 357  tgttccactttcacaaggatcatttgagcgatttgagaagccaatgccaaagcccaatcc 416

                                                                        
Query: 473  tgaatttaaccccttggcagccaaagcagctaccatcagtctctcaggatttggaggctt 532
            |||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||
Sbjct: 417  tgaatttaaccccttggctgctaaagcagctaccatcagtctctctgcatttggaggttt 476

                                                                        
Query: 533  tttcagcttcggtgatttctcaaacaagcgcaataagcagaactccaacaagaagaatcc 592
            ||||||||| |||||||||||||| |||||||||||| ||||    ||| | ||||| ||
Sbjct: 477  tttcagctttggtgatttctcaaataagcgcaataagaagaatagtaaccaaaagaagcc 536

                                                                        
Query: 593  caacaacctcccccagaataaaggccagtctaataacaatcatgaagcggtgagcaacaa 652
            ||||||||| ||||||||   ||| ||| ||||||||   ||||||||  |||||||  |
Sbjct: 537  caacaaccttccccagaacggaggtcagcctaataac---catgaagcactgagcaatga 593

                                                                        
Query: 653  ttggctggaaaatggtcaatgccctcttgcaaagtcatatagagcaatcggtggagtcgt 712
             ||||||||||  ||||||||||| || |||||||| || || ||| |  |||| |||||
Sbjct: 594  gtggctggaaatgggtcaatgccccctggcaaagtcgtacagggcattaagtggtgtcgt 653

                                                                        
Query: 713  gcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgtgccctcctgc 772
            ||| || ||||||||| || |||||||||| ||||||||||||||||  ||||| |||||
Sbjct: 654  gcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagatgcccacctgc 713

                                                                        
Query: 773  gattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggcttcgccctca 832
              | ||||| |||||||||||| |||| ||||| || ||||| ||||||||||| |||||
Sbjct: 714  agtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggcttcgtcctca 773

                                                                        
Query: 833  gcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaaatgttcctct 892
            ||||||||| || ||| || ||||||| ||| |||| |||||||||||||| ||||| ||
Sbjct: 774  gcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaaacgttcccct 833

                                                                        
Query: 893  tggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcggcggtccatgc 952
            |||||||||||||||||||||    || || ||||||||||||||||| || ||||||||
Sbjct: 834  tggcatctggagggagcacacggagaaattctcagtgcagtggtttgccgcagtccatgc 893

                                                                        
Query: 953  tgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaagagcgccatggc 1012
             || || ||||||||||| ||||| ||||||||  | || ||||| ||||  ||||||||
Sbjct: 894  ggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaagacagccatggc 953

                                                                        
Query: 1013 ccttacaatagctgcctcgatattgggtcagacaattggttcaagagctgagcgtatcag 1072
             ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 954  gcttaccatagctgcctcaatattgggtcagacaattggttcgagagctgagcgtatcag 1013

                         
Query: 1073 gttgaagagggca 1085
             ||||||||||||
Sbjct: 1014 attgaagagggca 1026



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>ref|NM_001072049.1| Oryza sativa (japonica cultivar-group) Os10g0580900 (Os10g0580900)
            mRNA, complete cds
          Length = 1357

 Score =  652 bits (329), Expect = 0.0
 Identities = 768/913 (84%), Gaps = 6/913 (0%)
 Strand = Plus / Plus

                                                                        
Query: 173  tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
            |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 141  tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 199

                                                                        
Query: 233  taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
              |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 200  --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 257

                                                                        
Query: 293  aagtttttccttgacatccgttaatttccccgctccggcaaccggagccaagggtccaat 352
            ||||||||| ||  | ||||||||||| || | ||| ||||  |||| ||||||||||||
Sbjct: 258  aagtttttcattctcgtccgttaattttcctgttcctgcaagaggagacaagggtccaat 317

                                                                        
Query: 353  tttcgaagacggacccaactttgacacggcatttcgagttttccacggcagagacggggt 412
            ||| ||||| |||||||| ||||||| |||||||||||||||||| |||  ||| |||||
Sbjct: 318  ttttgaagatggacccaattttgacatggcatttcgagttttccatggccaagatggggt 377

                                                                        
Query: 413  tgttccgctttcagaaggagcctttgcacatattgagaagcctctgccaaagcccactcc 472
            |||||| |||||| | ||| | ||||  |   ||||||||||  |||||||||||| |||
Sbjct: 378  tgttccactttcacatggatcatttgagcgatttgagaagccaatgccaaagcccaatcc 437

                                                                        
Query: 473  tgaatttaaccccttggcagccaaagcagctaccatcagtctctcaggatttggaggctt 532
            |||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||
Sbjct: 438  tgaatttaaccccttggctgctaaagcagctaccatcagtctctctgcatttggaggttt 497

                                                                        
Query: 533  tttcagcttcggtgatttctcaaacaagcgcaataagcagaactccaacaagaagaatcc 592
            ||||||||| |||||||||||||| |||||||||||| ||||    ||| | ||||| ||
Sbjct: 498  tttcagctttggtgatttctcaaataagcgcaataagaagaatagtaaccaaaagaagcc 557

                                                                        
Query: 593  caacaacctcccccagaataaaggccagtctaataacaatcatgaagcggtgagcaacaa 652
            ||||||||| ||||||||   ||| ||| ||||||||   ||||||||  |||||||  |
Sbjct: 558  caacaaccttccccagaacggaggtcagcctaataac---catgaagcactgagcaatga 614

                                                                        
Query: 653  ttggctggaaaatggtcaatgccctcttgcaaagtcatatagagcaatcggtggagtcgt 712
             ||||||||||  ||||||||||| || |||||||| || || ||| |  |||| |||||
Sbjct: 615  gtggctggaaatgggtcaatgccccctggcaaagtcgtacagggcattaagtggtgtcgt 674

                                                                        
Query: 713  gcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgtgccctcctgc 772
            ||| || ||||||||| || |||||||||| ||||||||||||||||  ||||| |||||
Sbjct: 675  gcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagatgcccacctgc 734

                                                                        
Query: 773  gattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggcttcgccctca 832
              | ||||| |||||||||||| |||| ||||| || ||||| ||||||||||| |||||
Sbjct: 735  agtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggcttcgtcctca 794

                                                                        
Query: 833  gcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaaatgttcctct 892
            ||||||||| || ||| || ||||||| ||| |||| |||||||||||||| ||||| ||
Sbjct: 795  gcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaaacgttcccct 854

                                                                        
Query: 893  tggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcggcggtccatgc 952
            |||||||||||||||||||||    || || ||||||||||||||||| || ||||||||
Sbjct: 855  tggcatctggagggagcacacggagaaattctcagtgcagtggtttgccgcagtccatgc 914

                                                                        
Query: 953  tgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaagagcgccatggc 1012
             || || ||||||||||| ||||| ||||||||  | || ||||| ||||  ||||||||
Sbjct: 915  ggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaagacagccatggc 974

                                                                        
Query: 1013 ccttacaatagctgcctcgatattgggtcagacaattggttcaagagctgagcgtatcag 1072
             ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 975  gcttaccatagctgcctcaatattgggtcagacaattggttcgagagctgagcgtatcag 1034

                         
Query: 1073 gttgaagagggca 1085
             ||||||||||||
Sbjct: 1035 attgaagagggca 1047



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>dbj|AK104136.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F07, full
            insert sequence
          Length = 1281

 Score =  652 bits (329), Expect = 0.0
 Identities = 768/913 (84%), Gaps = 6/913 (0%)
 Strand = Plus / Plus

                                                                        
Query: 173  tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
            |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 119  tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 177

                                                                        
Query: 233  taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
              |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 178  --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 235

                                                                        
Query: 293  aagtttttccttgacatccgttaatttccccgctccggcaaccggagccaagggtccaat 352
            ||||||||| ||  | ||||||||||| || | ||| ||||  |||| ||||||||||||
Sbjct: 236  aagtttttcattctcgtccgttaattttcctgttcctgcaagaggagacaagggtccaat 295

                                                                        
Query: 353  tttcgaagacggacccaactttgacacggcatttcgagttttccacggcagagacggggt 412
            ||| ||||| |||||||| ||||||| |||||||||||||||||| |||  ||| |||||
Sbjct: 296  ttttgaagatggacccaattttgacatggcatttcgagttttccatggccaagatggggt 355

                                                                        
Query: 413  tgttccgctttcagaaggagcctttgcacatattgagaagcctctgccaaagcccactcc 472
            |||||| |||||| | ||| | ||||  |   ||||||||||  |||||||||||| |||
Sbjct: 356  tgttccactttcacatggatcatttgagcgatttgagaagccaatgccaaagcccaatcc 415

                                                                        
Query: 473  tgaatttaaccccttggcagccaaagcagctaccatcagtctctcaggatttggaggctt 532
            |||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||
Sbjct: 416  tgaatttaaccccttggctgctaaagcagctaccatcagtctctctgcatttggaggttt 475

                                                                        
Query: 533  tttcagcttcggtgatttctcaaacaagcgcaataagcagaactccaacaagaagaatcc 592
            ||||||||| |||||||||||||| |||||||||||| ||||    ||| | ||||| ||
Sbjct: 476  tttcagctttggtgatttctcaaataagcgcaataagaagaatagtaaccaaaagaagcc 535

                                                                        
Query: 593  caacaacctcccccagaataaaggccagtctaataacaatcatgaagcggtgagcaacaa 652
            ||||||||| ||||||||   ||| ||| ||||||||   ||||||||  |||||||  |
Sbjct: 536  caacaaccttccccagaacggaggtcagcctaataac---catgaagcactgagcaatga 592

                                                                        
Query: 653  ttggctggaaaatggtcaatgccctcttgcaaagtcatatagagcaatcggtggagtcgt 712
             ||||||||||  ||||||||||| || |||||||| || || ||| |  |||| |||||
Sbjct: 593  gtggctggaaatgggtcaatgccccctggcaaagtcgtacagggcattaagtggtgtcgt 652

                                                                        
Query: 713  gcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgtgccctcctgc 772
            ||| || ||||||||| || |||||||||| ||||||||||||||||  ||||| |||||
Sbjct: 653  gcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagatgcccacctgc 712

                                                                        
Query: 773  gattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggcttcgccctca 832
              | ||||| |||||||||||| |||| ||||| || ||||| ||||||||||| |||||
Sbjct: 713  agtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggcttcgtcctca 772

                                                                        
Query: 833  gcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaaatgttcctct 892
            ||||||||| || ||| || ||||||| ||| |||| |||||||||||||| ||||| ||
Sbjct: 773  gcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaaacgttcccct 832

                                                                        
Query: 893  tggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcggcggtccatgc 952
            |||||||||||||||||||||    || || ||||||||||||||||| || ||||||||
Sbjct: 833  tggcatctggagggagcacacggagaaattctcagtgcagtggtttgccgcagtccatgc 892

                                                                        
Query: 953  tgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaagagcgccatggc 1012
             || || ||||||||||| ||||| ||||||||  | || ||||| ||||  ||||||||
Sbjct: 893  ggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaagacagccatggc 952

                                                                        
Query: 1013 ccttacaatagctgcctcgatattgggtcagacaattggttcaagagctgagcgtatcag 1072
             ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 953  gcttaccatagctgcctcaatattgggtcagacaattggttcgagagctgagcgtatcag 1012

                         
Query: 1073 gttgaagagggca 1085
             ||||||||||||
Sbjct: 1013 attgaagagggca 1025



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>dbj|AK072734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141G14, full
            insert sequence
          Length = 1357

 Score =  652 bits (329), Expect = 0.0
 Identities = 768/913 (84%), Gaps = 6/913 (0%)
 Strand = Plus / Plus

                                                                        
Query: 173  tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
            |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 141  tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 199

                                                                        
Query: 233  taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
              |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 200  --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 257

                                                                        
Query: 293  aagtttttccttgacatccgttaatttccccgctccggcaaccggagccaagggtccaat 352
            ||||||||| ||  | ||||||||||| || | ||| ||||  |||| ||||||||||||
Sbjct: 258  aagtttttcattctcgtccgttaattttcctgttcctgcaagaggagacaagggtccaat 317

                                                                        
Query: 353  tttcgaagacggacccaactttgacacggcatttcgagttttccacggcagagacggggt 412
            ||| ||||| |||||||| ||||||| |||||||||||||||||| |||  ||| |||||
Sbjct: 318  ttttgaagatggacccaattttgacatggcatttcgagttttccatggccaagatggggt 377

                                                                        
Query: 413  tgttccgctttcagaaggagcctttgcacatattgagaagcctctgccaaagcccactcc 472
            |||||| |||||| | ||| | ||||  |   ||||||||||  |||||||||||| |||
Sbjct: 378  tgttccactttcacatggatcatttgagcgatttgagaagccaatgccaaagcccaatcc 437

                                                                        
Query: 473  tgaatttaaccccttggcagccaaagcagctaccatcagtctctcaggatttggaggctt 532
            |||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||
Sbjct: 438  tgaatttaaccccttggctgctaaagcagctaccatcagtctctctgcatttggaggttt 497

                                                                        
Query: 533  tttcagcttcggtgatttctcaaacaagcgcaataagcagaactccaacaagaagaatcc 592
            ||||||||| |||||||||||||| |||||||||||| ||||    ||| | ||||| ||
Sbjct: 498  tttcagctttggtgatttctcaaataagcgcaataagaagaatagtaaccaaaagaagcc 557

                                                                        
Query: 593  caacaacctcccccagaataaaggccagtctaataacaatcatgaagcggtgagcaacaa 652
            ||||||||| ||||||||   ||| ||| ||||||||   ||||||||  |||||||  |
Sbjct: 558  caacaaccttccccagaacggaggtcagcctaataac---catgaagcactgagcaatga 614

                                                                        
Query: 653  ttggctggaaaatggtcaatgccctcttgcaaagtcatatagagcaatcggtggagtcgt 712
             ||||||||||  ||||||||||| || |||||||| || || ||| |  |||| |||||
Sbjct: 615  gtggctggaaatgggtcaatgccccctggcaaagtcgtacagggcattaagtggtgtcgt 674

                                                                        
Query: 713  gcctcttgtcgcaaagctgctgacacccccagctggtatgaaactgacgtgccctcctgc 772
            ||| || ||||||||| || |||||||||| ||||||||||||||||  ||||| |||||
Sbjct: 675  gcccctcgtcgcaaagatgatgacacccccggctggtatgaaactgagatgcccacctgc 734

                                                                        
Query: 773  gattgttgctgcccgtgcagcaatatcccgcacggcatttgcgaaggggcttcgccctca 832
              | ||||| |||||||||||| |||| ||||| || ||||| ||||||||||| |||||
Sbjct: 735  agtagttgccgcccgtgcagcactatcacgcacagcctttgccaaggggcttcgtcctca 794

                                                                        
Query: 833  gcccctaccaacaaaagtagtggtgatcgcgctgctcggtatggcagcaaatgttcctct 892
            ||||||||| || ||| || ||||||| ||| |||| |||||||||||||| ||||| ||
Sbjct: 795  gcccctaccgacgaaaatactggtgatggcgttgcttggtatggcagcaaacgttcccct 854

                                                                        
Query: 893  tggcatctggagggagcacaccacaaagttttcagtgcagtggtttgcggcggtccatgc 952
            |||||||||||||||||||||    || || ||||||||||||||||| || ||||||||
Sbjct: 855  tggcatctggagggagcacacggagaaattctcagtgcagtggtttgccgcagtccatgc 914

                                                                        
Query: 953  tgcagtgcctttcatagggatgctgaggaagtccatcctaatgccgaagagcgccatggc 1012
             || || ||||||||||| ||||| ||||||||  | || ||||| ||||  ||||||||
Sbjct: 915  ggcggtacctttcataggcatgctcaggaagtctgtgctgatgccaaagacagccatggc 974

                                                                        
Query: 1013 ccttacaatagctgcctcgatattgggtcagacaattggttcaagagctgagcgtatcag 1072
             ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 975  gcttaccatagctgcctcaatattgggtcagacaattggttcgagagctgagcgtatcag 1034

                         
Query: 1073 gttgaagagggca 1085
             ||||||||||||
Sbjct: 1035 attgaagagggca 1047



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score =  359 bits (181), Expect = 2e-95
 Identities = 385/453 (84%)
 Strand = Plus / Minus

                                                                            
Query: 633      catgaagcggtgagcaacaattggctggaaaatggtcaatgccctcttgcaaagtcatat 692
                ||||||||  |||||||  | ||||||||||  ||||||||||| || |||||||| || 
Sbjct: 22672852 catgaagcactgagcaatgagtggctggaaatgggtcaatgccccctggcaaagtcgtac 22672793

                                                                            
Query: 693      agagcaatcggtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatg 752
                || ||| |  |||| |||||||| || ||||||||| || |||||||||| |||||||||
Sbjct: 22672792 agggcattaagtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatg 22672733

                                                                            
Query: 753      aaactgacgtgccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcattt 812
                |||||||  ||||| |||||  | ||||| |||||||||||| |||| ||||| || |||
Sbjct: 22672732 aaactgagatgcccacctgcagtagttgccgcccgtgcagcactatcacgcacagccttt 22672673

                                                                            
Query: 813      gcgaaggggcttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggt 872
                || ||||||||||| |||||||||||||| || ||| || ||||||| ||| |||| |||
Sbjct: 22672672 gccaaggggcttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggt 22672613

                                                                            
Query: 873      atggcagcaaatgttcctcttggcatctggagggagcacaccacaaagttttcagtgcag 932
                ||||||||||| ||||| |||||||||||||||||||||||    || || |||||||||
Sbjct: 22672612 atggcagcaaacgttccccttggcatctggagggagcacacggagaaattctcagtgcag 22672553

                                                                            
Query: 933      tggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaagtccatccta 992
                |||||||| || |||||||| || || ||||||||||| ||||| ||||||||  | || 
Sbjct: 22672552 tggtttgccgcagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctg 22672493

                                                                            
Query: 993      atgccgaagagcgccatggcccttacaatagctgcctcgatattgggtcagacaattggt 1052
                ||||| ||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 22672492 atgccaaagacagccatggcgcttaccatagctgcctcaatattgggtcagacaattggt 22672433

                                                 
Query: 1053     tcaagagctgagcgtatcaggttgaagagggca 1085
                || ||||||||||||||||| ||||||||||||
Sbjct: 22672432 tcgagagctgagcgtatcagattgaagagggca 22672400



 Score =  240 bits (121), Expect = 1e-59
 Identities = 235/273 (86%)
 Strand = Plus / Minus

                                                                            
Query: 336      ggagccaagggtccaattttcgaagacggacccaactttgacacggcatttcgagttttc 395
                |||| ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 22673476 ggagacaagggtccaatttttgaagatggacccaattttgacatggcatttcgagttttc 22673417

                                                                            
Query: 396      cacggcagagacggggttgttccgctttcagaaggagcctttgcacatattgagaagcct 455
                || |||  ||| ||||||||||| |||||| | ||| | ||||  |   |||||||||| 
Sbjct: 22673416 catggccaagatggggttgttccactttcacatggatcatttgagcgatttgagaagcca 22673357

                                                                            
Query: 456      ctgccaaagcccactcctgaatttaaccccttggcagccaaagcagctaccatcagtctc 515
                 |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 22673356 atgccaaagcccaatcctgaatttaaccccttggctgctaaagcagctaccatcagtctc 22673297

                                                                            
Query: 516      tcaggatttggaggctttttcagcttcggtgatttctcaaacaagcgcaataagcagaac 575
                || | ||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| 
Sbjct: 22673296 tctgcatttggaggttttttcagctttggtgatttctcaaataagcgcaataagaagaat 22673237

                                                 
Query: 576      tccaacaagaagaatcccaacaacctcccccag 608
                   ||| | ||||| ||||||||||| ||||||
Sbjct: 22673236 agtaaccaaaagaagcccaacaaccttccccag 22673204



 Score = 89.7 bits (45), Expect = 3e-14
 Identities = 122/147 (82%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                            
Query: 173      tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
                |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 22673740 tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 22673682

                                                                            
Query: 233      taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
                  |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 22673681 --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 22673624

                                           
Query: 293      aagtttttccttgacatccgttaattt 319
                ||||||||| ||  | |||||||||||
Sbjct: 22673623 aagtttttcattctcgtccgttaattt 22673597



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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
              sequence
          Length = 139999

 Score =  359 bits (181), Expect = 2e-95
 Identities = 385/453 (84%)
 Strand = Plus / Minus

                                                                          
Query: 633    catgaagcggtgagcaacaattggctggaaaatggtcaatgccctcttgcaaagtcatat 692
              ||||||||  |||||||  | ||||||||||  ||||||||||| || |||||||| || 
Sbjct: 127521 catgaagcactgagcaatgagtggctggaaatgggtcaatgccccctggcaaagtcgtac 127462

                                                                          
Query: 693    agagcaatcggtggagtcgtgcctcttgtcgcaaagctgctgacacccccagctggtatg 752
              || ||| |  |||| |||||||| || ||||||||| || |||||||||| |||||||||
Sbjct: 127461 agggcattaagtggtgtcgtgcccctcgtcgcaaagatgatgacacccccggctggtatg 127402

                                                                          
Query: 753    aaactgacgtgccctcctgcgattgttgctgcccgtgcagcaatatcccgcacggcattt 812
              |||||||  ||||| |||||  | ||||| |||||||||||| |||| ||||| || |||
Sbjct: 127401 aaactgagatgcccacctgcagtagttgccgcccgtgcagcactatcacgcacagccttt 127342

                                                                          
Query: 813    gcgaaggggcttcgccctcagcccctaccaacaaaagtagtggtgatcgcgctgctcggt 872
              || ||||||||||| |||||||||||||| || ||| || ||||||| ||| |||| |||
Sbjct: 127341 gccaaggggcttcgtcctcagcccctaccgacgaaaatactggtgatggcgttgcttggt 127282

                                                                          
Query: 873    atggcagcaaatgttcctcttggcatctggagggagcacaccacaaagttttcagtgcag 932
              ||||||||||| ||||| |||||||||||||||||||||||    || || |||||||||
Sbjct: 127281 atggcagcaaacgttccccttggcatctggagggagcacacggagaaattctcagtgcag 127222

                                                                          
Query: 933    tggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaagtccatccta 992
              |||||||| || |||||||| || || ||||||||||| ||||| ||||||||  | || 
Sbjct: 127221 tggtttgccgcagtccatgcggcggtacctttcataggcatgctcaggaagtctgtgctg 127162

                                                                          
Query: 993    atgccgaagagcgccatggcccttacaatagctgcctcgatattgggtcagacaattggt 1052
              ||||| ||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 127161 atgccaaagacagccatggcgcttaccatagctgcctcaatattgggtcagacaattggt 127102

                                               
Query: 1053   tcaagagctgagcgtatcaggttgaagagggca 1085
              || ||||||||||||||||| ||||||||||||
Sbjct: 127101 tcgagagctgagcgtatcagattgaagagggca 127069



 Score =  240 bits (121), Expect = 1e-59
 Identities = 235/273 (86%)
 Strand = Plus / Minus

                                                                          
Query: 336    ggagccaagggtccaattttcgaagacggacccaactttgacacggcatttcgagttttc 395
              |||| ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 128145 ggagacaagggtccaatttttgaagatggacccaattttgacatggcatttcgagttttc 128086

                                                                          
Query: 396    cacggcagagacggggttgttccgctttcagaaggagcctttgcacatattgagaagcct 455
              || |||  ||| ||||||||||| |||||| | ||| | ||||  |   |||||||||| 
Sbjct: 128085 catggccaagatggggttgttccactttcacatggatcatttgagcgatttgagaagcca 128026

                                                                          
Query: 456    ctgccaaagcccactcctgaatttaaccccttggcagccaaagcagctaccatcagtctc 515
               |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 128025 atgccaaagcccaatcctgaatttaaccccttggctgctaaagcagctaccatcagtctc 127966

                                                                          
Query: 516    tcaggatttggaggctttttcagcttcggtgatttctcaaacaagcgcaataagcagaac 575
              || | ||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| 
Sbjct: 127965 tctgcatttggaggttttttcagctttggtgatttctcaaataagcgcaataagaagaat 127906

                                               
Query: 576    tccaacaagaagaatcccaacaacctcccccag 608
                 ||| | ||||| ||||||||||| ||||||
Sbjct: 127905 agtaaccaaaagaagcccaacaaccttccccag 127873



 Score = 89.7 bits (45), Expect = 3e-14
 Identities = 122/147 (82%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                          
Query: 173    tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
              |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 128409 tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 128351

                                                                          
Query: 233    taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
                |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 128350 --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 128293

                                         
Query: 293    aagtttttccttgacatccgttaattt 319
              ||||||||| ||  | |||||||||||
Sbjct: 128292 aagtttttcattctcgtccgttaattt 128266



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>emb|CT832102.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054N11, full
           insert sequence
          Length = 598

 Score =  309 bits (156), Expect = 1e-80
 Identities = 335/394 (85%), Gaps = 3/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 173 tgttcacatggattcctttttccaaagagctttcggtgacccaatgtgctcggaagacag 232
           |||||| |||||| |||||||||  ||||||| | |||||||  |||||| |||||||| 
Sbjct: 208 tgttcatatggatccctttttccgcagagcttccagtgaccccttgtgcttggaagaca- 266

                                                                       
Query: 233 taatgttgtccagcaaggaattgaacgatgcccattcctgaggaacatcaacgagcctac 292
             |    ||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 267 --actccgtccaacatggaattgaaagatgcccattcctaaggaacatcaatgagcctac 324

                                                                       
Query: 293 aagtttttccttgacatccgttaatttccccgctccggcaaccggagccaagggtccaat 352
           ||||||||| ||  | ||||||||||| || | ||| ||||  |||| ||||||||||||
Sbjct: 325 aagtttttcattctcgtccgttaattttcctgttcctgcaagaggagacaagggtccaat 384

                                                                       
Query: 353 tttcgaagacggacccaactttgacacggcatttcgagttttccacggcagagacggggt 412
           ||| ||||| |||||||| ||||||| |||||||||||||||||| |||  ||| |||||
Sbjct: 385 ttttgaagatggacccaattttgacatggcatttcgagttttccatggccaagatggggt 444

                                                                       
Query: 413 tgttccgctttcagaaggagcctttgcacatattgagaagcctctgccaaagcccactcc 472
           |||||| |||||| ||||| | ||||  |   ||||||||||  |||||||||||| |||
Sbjct: 445 tgttccactttcacaaggatcatttgagcgatttgagaagccaatgccaaagcccaatcc 504

                                                                       
Query: 473 tgaatttaaccccttggcagccaaagcagctaccatcagtctctcaggatttggaggctt 532
           |||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||
Sbjct: 505 tgaatttaaccccttggctgctaaagcagctaccatcagtctctctgcatttggaggttt 564

                                             
Query: 533 tttcagcttcggtgatttctcaaacaagcgcaat 566
           ||||||||| |||||||||||||| |||||||||
Sbjct: 565 tttcagctttggtgatttctcaaataagcgcaat 598



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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score = 50.1 bits (25), Expect = 0.022
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 259 gatgcccattcctgaggaacatcaa 283
           |||||||||||||||||||||||||
Sbjct: 146 gatgcccattcctgaggaacatcaa 170



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>emb|CT830042.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN080G16, full
           insert sequence
          Length = 1436

 Score = 48.1 bits (24), Expect = 0.088
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 336 ggagccaagggtccaattttcgaagacggacc 367
           |||||||||||||||||||| || ||||||||
Sbjct: 235 ggagccaagggtccaatttttgaggacggacc 266



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 259 gatgcccattcctgaggaacatcaa 283
           |||||||||||||||| ||||||||
Sbjct: 161 gatgcccattcctgagaaacatcaa 185



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 930 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 877 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 929



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.088
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 336    ggagccaagggtccaattttcgaagacggacc 367
              |||||||||||||||||||| || ||||||||
Sbjct: 877616 ggagccaagggtccaatttttgaggacggacc 877585



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 930    cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
              ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 876536 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 876484



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 259    gatgcccattcctgaggaacatcaa 283
              |||||||||||||||| ||||||||
Sbjct: 877774 gatgcccattcctgagaaacatcaa 877750



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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 48.1 bits (24), Expect = 0.088
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 336   ggagccaagggtccaattttcgaagacggacc 367
             |||||||||||||||||||| || ||||||||
Sbjct: 58511 ggagccaagggtccaatttttgaggacggacc 58480



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 930   cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
             ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 57431 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 57379



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 259   gatgcccattcctgaggaacatcaa 283
             |||||||||||||||| ||||||||
Sbjct: 58669 gatgcccattcctgagaaacatcaa 58645



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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score = 48.1 bits (24), Expect = 0.088
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 336  ggagccaagggtccaattttcgaagacggacc 367
            |||||||||||||||||||| || ||||||||
Sbjct: 1827 ggagccaagggtccaatttttgaggacggacc 1858



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 259  gatgcccattcctgaggaacatcaa 283
            |||||||||||||||| ||||||||
Sbjct: 1669 gatgcccattcctgagaaacatcaa 1693



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 930  cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
            ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 2907 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 2959



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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score = 48.1 bits (24), Expect = 0.088
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  ggagccaagggtccaattttcgaagacggacc 367
            |||||||||||||||||||| || ||||||||
Sbjct: 9704 ggagccaagggtccaatttttgaggacggacc 9673



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 930  cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
            ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 8624 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 8572



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 259  gatgcccattcctgaggaacatcaa 283
            |||||||||||||||| ||||||||
Sbjct: 9862 gatgcccattcctgagaaacatcaa 9838



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>gb|AY107177.1| Zea mays PCO111128 mRNA sequence
          Length = 539

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 1042 agacaattggttcaagagctgagcgtatcaggttgaagagggc 1084
            ||||||| || ||||||||||| ||||||||  ||||||||||
Sbjct: 17   agacaatcgggtcaagagctgaacgtatcagactgaagagggc 59



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>ref|NM_001065467.1| Oryza sativa (japonica cultivar-group) Os07g0159500 (Os07g0159500)
            mRNA, complete cds
          Length = 1698

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 929  gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
            |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 1120 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 1173



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 259 gatgcccattcctgaggaacatcaa 283
           |||||||||||||||| ||||||||
Sbjct: 405 gatgcccattcctgagaaacatcaa 429



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>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence
          Length = 154037

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    caaggaattgaacgatgcccat 267
              ||||||||||||||||||||||
Sbjct: 100181 caaggaattgaacgatgcccat 100202



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                     
Query: 929     gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
               |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 3216072 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 3216019



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 259     gatgcccattcctgaggaacatcaa 283
               |||||||||||||||| ||||||||
Sbjct: 3217264 gatgcccattcctgagaaacatcaa 3217240



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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                    
Query: 929    gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
              |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 131062 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 131009



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 259    gatgcccattcctgaggaacatcaa 283
              |||||||||||||||| ||||||||
Sbjct: 132254 gatgcccattcctgagaaacatcaa 132230



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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 929  gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
            |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 1121 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 1174



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 259 gatgcccattcctgaggaacatcaa 283
           |||||||||||||||| ||||||||
Sbjct: 406 gatgcccattcctgagaaacatcaa 430



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 929   gcagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
             |||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 25765 gcagtggtttgcagctgtccatgccgctgttccattcatcggaatgctgaggaa 25712



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 259   gatgcccattcctgaggaacatcaa 283
             |||||||||||||||| ||||||||
Sbjct: 26957 gatgcccattcctgagaaacatcaa 26933



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>gb|CP000454.1| Arthrobacter sp. FB24, complete genome
          Length = 4698945

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 99      ctgcccgcccgcctcgcctcc 119
               |||||||||||||||||||||
Sbjct: 3634909 ctgcccgcccgcctcgcctcc 3634929



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>emb|CR855213.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20,
             complete sequence
          Length = 96688

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   cgcccgcctcgcctcctcgtc 124
             |||||||||||||||||||||
Sbjct: 47459 cgcccgcctcgcctcctcgtc 47479



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>ref|NM_001063151.1| Oryza sativa (japonica cultivar-group) Os06g0115800 (Os06g0115800)
           mRNA, partial cds
          Length = 1116

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 930 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 529 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 581



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>gb|AC187106.2| Gallus gallus BAC clone CH261-148O18 from chromosome z, complete sequence
          Length = 184475

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    gtctgcctcctcccctcccgc 142
              |||||||||||||||||||||
Sbjct: 147068 gtctgcctcctcccctcccgc 147088



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>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete
             sequence
          Length = 102515

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   tgcccgcccgcctcgcctcctcgtc 124
             ||||||||||| |||||||||||||
Sbjct: 61159 tgcccgcccgcttcgcctcctcgtc 61183



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>gb|BT017396.1| Zea mays clone EL01N0328C04.c mRNA sequence
          Length = 1249

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 259 gatgcccattcctgaggaacatcaa 283
           ||||||||||||||||||| |||||
Sbjct: 877 gatgcccattcctgaggaatatcaa 901



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>gb|U97551.1| Caenorhabditis elegans cosmid T01B10, complete sequence
          Length = 33745

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1393 gtgcagtcaataaattttaccatgt 1417
            ||||| |||||||||||||||||||
Sbjct: 4576 gtgcaatcaataaattttaccatgt 4600



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>gb|BC073187.1| Xenopus laevis MGC80422 protein, mRNA (cDNA clone MGC:80422
            IMAGE:5155242), complete cds
          Length = 2443

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 729  ctgctgacacccccagctggt 749
            |||||||||||||||||||||
Sbjct: 1564 ctgctgacacccccagctggt 1544



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>gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, complete sequence
          Length = 180132

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 115   cctcctcgtctgcctcctcccctcc 139
             ||||||||||||||||||| |||||
Sbjct: 49132 cctcctcgtctgcctcctctcctcc 49108



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>gb|AC146452.3| Pan troglodytes BAC clone CH251-483N3 from Y, complete sequence
          Length = 215209

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 115    cctcctcgtctgcctcctcccctcc 139
              ||||||||||||||||||| |||||
Sbjct: 204063 cctcctcgtctgcctcctctcctcc 204039



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>gb|AF126011.1| Antheraea mylitta mariner transposon Anm3.2 transposase pseudogene,
           complete sequence
          Length = 1589

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 178 acatggattcctttttccaaa 198
           |||||||||||||||||||||
Sbjct: 163 acatggattcctttttccaaa 183



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>gb|AC078794.13| Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154667

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 460   caaagcccactcctgaattta 480
             |||||||||||||||||||||
Sbjct: 33734 caaagcccactcctgaattta 33714



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>dbj|AK044782.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930104J06 product:B-cell CLL/lymphoma 7A, full
           insert sequence
          Length = 3754

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 cagtctctcaggatttggagg 529
           |||||||||||||||||||||
Sbjct: 704 cagtctctcaggatttggagg 724



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 100     tgcccgcccgcctcgcctcctcgtc 124
               ||||||||||| |||||||||||||
Sbjct: 4395173 tgcccgcccgcttcgcctcctcgtc 4395197



 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 104      cgcccgcctcgcctcctcgtc 124
                |||||||||||||||||||||
Sbjct: 25373834 cgcccgcctcgcctcctcgtc 25373854



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>emb|AL078646.29|HSJ709L21 Human DNA sequence from clone RP4-709L21 on chromosome 1q42.13-43
             Contains part of the GALNT2 gene for
             UDP-N-acetyl-alpha-D-galactosamine:polypeptide
             N-acetylgalactosaminyltransferase 2 (GalNAc-T2), complete
             sequence
          Length = 129413

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 115   cctcctcgtctgcctcctcccctcc 139
             ||||||| |||||||||||||||||
Sbjct: 71582 cctcctcctctgcctcctcccctcc 71606



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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
              complete sequence
          Length = 164577

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    cgcccgcctcgcctcctcgtc 124
              |||||||||||||||||||||
Sbjct: 100393 cgcccgcctcgcctcctcgtc 100413



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>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
             complete sequence
          Length = 150305

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   tgcccgcccgcctcgcctcctcgtc 124
             ||||||||||| |||||||||||||
Sbjct: 22905 tgcccgcccgcttcgcctcctcgtc 22929



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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 484     ccttggcagccaaagcagcta 504
               |||||||||||||||||||||
Sbjct: 1046947 ccttggcagccaaagcagcta 1046967



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>gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y, complete sequence
          Length = 184977

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    cctcctcgtctgcctcctcccctcc 139
              ||||||||||||||||||| |||||
Sbjct: 119139 cctcctcgtctgcctcctctcctcc 119163



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>dbj|BS000593.2| Pan troglodytes chromosome Y clone:PTB-006C19, complete sequences
          Length = 108944

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 115   cctcctcgtctgcctcctcccctcc 139
             ||||||||||||||||||| |||||
Sbjct: 43760 cctcctcgtctgcctcctctcctcc 43784



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>dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, complete sequences
          Length = 129327

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    cctcctcgtctgcctcctcccctcc 139
              ||||||||||||||||||| |||||
Sbjct: 124909 cctcctcgtctgcctcctctcctcc 124933



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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 930 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 529 cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 581



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>emb|BX004869.13| Zebrafish DNA sequence from clone CH211-69E21 in linkage group 17,
             complete sequence
          Length = 182325

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   cctcctcgtctgcctcctccc 135
             |||||||||||||||||||||
Sbjct: 43921 cctcctcgtctgcctcctccc 43941



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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 930 cagtggtttgcggcggtccatgctgcagtgcctttcatagggatgctgaggaa 982
           ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 75  cagtggtttgcagctgtccatgccgctgttccattcattggaatgctgaggaa 127



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>gb|AC148120.4| Saimiri boliviensis boliviensis clone CH254-165N18, complete sequence
          Length = 199625

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 918    aagttttcagtgcagtggttt 938
              |||||||||||||||||||||
Sbjct: 131920 aagttttcagtgcagtggttt 131940



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>emb|AL606977.28| Mouse DNA sequence from clone RP23-284L6 on chromosome 4, complete
             sequence
          Length = 199429

 Score = 42.1 bits (21), Expect = 5.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 116   ctcctcgtctgcctcctcccctccc 140
             |||||| ||||||||||||||||||
Sbjct: 77194 ctcctcctctgcctcctcccctccc 77218


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 239,082,079
Number of extensions: 13079656
Number of successful extensions: 241105
Number of sequences better than 10.0: 46
Number of HSP's gapped: 241087
Number of HSP's successfully gapped: 71
Length of query: 1431
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1408
Effective length of database: 18,503,978,556
Effective search space: 26053601806848
Effective search space used: 26053601806848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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