| Clone Name | FLbaf33o24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001072284.1| Oryza sativa (japonica cultivar-group) Os11g0148800 (Os11g0148800) mRNA, complete cds Length = 933 Score = 127 bits (64), Expect = 2e-25 Identities = 187/228 (82%) Strand = Plus / Plus Query: 486 gatgttatccttggaagcaaggatggtgttggttcgtccatgaaaccaatctgctgtctc 545 |||||||| ||| |||||| |||||| || || ||| | |||||||| | ||||| |||| Sbjct: 214 gatgttattcttagaagcagggatggcgtaggctcgccgatgaaaccgacctgctttctc 273 Query: 546 tgccgcaagcgatattccccagacctgatgtacatccggtgtgagaggtgcagaaattgg 605 ||| ||||| |||| ||||| ||||||| ||||| || ||||| |||||||||||| Sbjct: 274 tgcttcaagccatatcgatcagacttgatgtatatccgctgcgagagttgcagaaattgg 333 Query: 606 ttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgtacaga 665 || |||||||||||| || ||| ||||| | |||||| ||| || | || ||||||||| Sbjct: 334 tttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgtacaga 393 Query: 666 tgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713 ||||||||||||||||||||| | | ||| |||||||||||||||| Sbjct: 394 tgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 441 Score = 50.1 bits (25), Expect = 0.028 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1316 accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372 ||||||||||| |||||| | |||||| | || || ||||||||||||||| ||||| Sbjct: 796 accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 852
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 81.8 bits (41), Expect = 8e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 601 attggttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgt 660 ||||||| |||||||||||| || ||| ||||| | |||||| ||| || | || |||| Sbjct: 19330 attggtttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgt 19271 Query: 661 acagatgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713 |||||||||||||||||||||||||| | | ||| |||||||||||||||| Sbjct: 19270 acagatgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 19218 Score = 50.1 bits (25), Expect = 0.028 Identities = 49/57 (85%) Strand = Plus / Minus Query: 1316 accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372 ||||||||||| |||||| | |||||| | || || ||||||||||||||| ||||| Sbjct: 17896 accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 17840 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Minus Query: 996 ccatatgatgcatgctttgcatggtat 1022 ||||||||||||||| ||||||||||| Sbjct: 18198 ccatatgatgcatgcgttgcatggtat 18172 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 698 atgtcctcattcagatgattat 719 |||||||||||||||||||||| Sbjct: 7917 atgtcctcattcagatgattat 7896
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 81.8 bits (41), Expect = 8e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 601 attggttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgt 660 ||||||| |||||||||||| || ||| ||||| | |||||| ||| || | || |||| Sbjct: 2243331 attggtttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgt 2243272 Query: 661 acagatgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713 |||||||||||||||||||||||||| | | ||| |||||||||||||||| Sbjct: 2243271 acagatgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 2243219 Score = 50.1 bits (25), Expect = 0.028 Identities = 49/57 (85%) Strand = Plus / Minus Query: 1316 accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372 ||||||||||| |||||| | |||||| | || || ||||||||||||||| ||||| Sbjct: 2241897 accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 2241841 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Minus Query: 996 ccatatgatgcatgctttgcatggtat 1022 ||||||||||||||| ||||||||||| Sbjct: 2242199 ccatatgatgcatgcgttgcatggtat 2242173 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 698 atgtcctcattcagatgattat 719 |||||||||||||||||||||| Sbjct: 2231918 atgtcctcattcagatgattat 2231897
>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence Length = 175861 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1447 ccagagtagcctctaagactccagcac 1473 ||||||||| ||||||||||||||||| Sbjct: 173736 ccagagtaggctctaagactccagcac 173762
>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence Length = 192347 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1447 ccagagtagcctctaagactccagcac 1473 ||||||||| ||||||||||||||||| Sbjct: 64808 ccagagtaggctctaagactccagcac 64834
>ref|NM_001072283.1| Oryza sativa (japonica cultivar-group) Os11g0148700 (Os11g0148700) mRNA, complete cds Length = 3485 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 698 atgtcctcattcagatgattat 719 |||||||||||||||||||||| Sbjct: 2139 atgtcctcattcagatgattat 2160
>gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete sequence Length = 86658 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 tccttggaagcaaggatggtgt 514 |||||||||||||||||||||| Sbjct: 34486 tccttggaagcaaggatggtgt 34507
>dbj|AK066721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083G18, full insert sequence Length = 3485 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 698 atgtcctcattcagatgattat 719 |||||||||||||||||||||| Sbjct: 2139 atgtcctcattcagatgattat 2160
>emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chromosome 2, complete sequence Length = 167210 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 758 aagtgcagctaatattccctca 779 |||||||||||||||||||||| Sbjct: 94751 aagtgcagctaatattccctca 94730
>tpg|BK000383.1| TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1172 attcattcatattgccatgtg 1192 ||||||||||||||||||||| Sbjct: 445824 attcattcatattgccatgtg 445844
>gb|AC158652.5| Mus musculus 6 BAC RP23-238I17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217046 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tggatcgaggagatggcctga 261 ||||||||||||||||||||| Sbjct: 50474 tggatcgaggagatggcctga 50494
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1172 attcattcatattgccatgtg 1192 ||||||||||||||||||||| Sbjct: 445824 attcattcatattgccatgtg 445844
>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence Length = 130127 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 493 tccttggaagcaaggatggtg 513 ||||||||||||||||||||| Sbjct: 2328 tccttggaagcaaggatggtg 2308
>gb|AC068931.6| Homo sapiens chromosome 8, clone RP11-650B11, complete sequence Length = 101474 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1172 attcattcatattgccatgtg 1192 ||||||||||||||||||||| Sbjct: 11502 attcattcatattgccatgtg 11482
>emb|AL442063.8| Human DNA sequence from clone RP11-8N6 on chromosome 9 Contains the 3' end of the MELK gene for maternal embryonic leucine zipper kinase (KIAA0175), complete sequence Length = 141833 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 gggggagcagaaggaagaaaa 147 ||||||||||||||||||||| Sbjct: 96868 gggggagcagaaggaagaaaa 96888
>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence Length = 177019 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1172 attcattcatattgccatgtg 1192 ||||||||||||||||||||| Sbjct: 175346 attcattcatattgccatgtg 175326
>emb|AL353638.15| Human DNA sequence from clone RP11-338L20 on chromosome 9 Contains a ribosomal protein S26 pseudogene 3 and part the 5' UTR of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 161067 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 935 ttacaattcagcacattcatt 955 ||||||||||||||||||||| Sbjct: 132669 ttacaattcagcacattcatt 132649
>gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete sequence Length = 147688 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 tccttggaagcaaggatggtg 513 ||||||||||||||||||||| Sbjct: 21819 tccttggaagcaaggatggtg 21839
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 942 tcagcacattcattcgataag 962 ||||||||||||||||||||| Sbjct: 4660054 tcagcacattcattcgataag 4660074
>gb|AC007305.40| Mus musculus strain 129/SvJ clone mgs1-211l20 map 6, complete sequence Length = 214840 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tggatcgaggagatggcctga 261 ||||||||||||||||||||| Sbjct: 132205 tggatcgaggagatggcctga 132225
>emb|AJ326117.1|HSA326117 Homo sapiens genomic sequence surrounding NotI site, clone NL1-BG14C Length = 669 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gggggagcagaaggaagaaaa 147 ||||||||||||||||||||| Sbjct: 394 gggggagcagaaggaagaaaa 374
>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence Length = 122744 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 493 tccttggaagcaaggatggtg 513 ||||||||||||||||||||| Sbjct: 114445 tccttggaagcaaggatggtg 114425
>emb|AL158141.14| Human DNA sequence from clone RP11-351K23 on chromosome X Contains the 5' end of the IGBP1 gene for immunoglobulin (CD79A) binding protein 1, a NADH dehydrogenase 5 (MTND5) pseudogene, a cytochrome b family pseudogene, a novel gene, the 3' end of the ED1 gene for ectodermal dysplasia 1, anhidrotic and three CpG islands, complete sequence Length = 184181 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1082 cctgccagttcccacagtggagacc 1106 |||||||| |||||||||||||||| Sbjct: 81918 cctgccagatcccacagtggagacc 81942 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 304,929,598 Number of extensions: 15587101 Number of successful extensions: 291263 Number of sequences better than 10.0: 23 Number of HSP's gapped: 291260 Number of HSP's successfully gapped: 30 Length of query: 1817 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1794 Effective length of database: 18,503,978,556 Effective search space: 33196137529464 Effective search space used: 33196137529464 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)