ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf33o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001072284.1| Oryza sativa (japonica cultivar-group) Os11g... 127 2e-25
2gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 82 8e-12
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 8e-12
4gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, com... 46 0.44
5gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, comp... 46 0.44
6ref|NM_001072283.1| Oryza sativa (japonica cultivar-group) Os11g... 44 1.8
7gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete s... 44 1.8
8dbj|AK066721.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 1.8
9emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chro... 44 1.8
10tpg|BK000383.1| TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1... 42 6.9
11gb|AC158652.5| Mus musculus 6 BAC RP23-238I17 (Roswell Park Canc... 42 6.9
12gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 42 6.9
13gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 42 6.9
14gb|AC068931.6| Homo sapiens chromosome 8, clone RP11-650B11, com... 42 6.9
15emb|AL442063.8| Human DNA sequence from clone RP11-8N6 on chromo... 42 6.9
16gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, comp... 42 6.9
17emb|AL353638.15| Human DNA sequence from clone RP11-338L20 on ch... 42 6.9
18gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete ... 42 6.9
19emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 42 6.9
20gb|AC007305.40| Mus musculus strain 129/SvJ clone mgs1-211l20 ma... 42 6.9
21emb|AJ326117.1|HSA326117 Homo sapiens genomic sequence surroundi... 42 6.9
22gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete s... 42 6.9
23emb|AL158141.14| Human DNA sequence from clone RP11-351K23 on ch... 42 6.9

>ref|NM_001072284.1| Oryza sativa (japonica cultivar-group) Os11g0148800 (Os11g0148800)
           mRNA, complete cds
          Length = 933
 Score =  127 bits (64), Expect = 2e-25
 Identities = 187/228 (82%)
 Strand = Plus / Plus

                                                                       
Query: 486 gatgttatccttggaagcaaggatggtgttggttcgtccatgaaaccaatctgctgtctc 545
           |||||||| ||| |||||| |||||| || || ||| | |||||||| | ||||| ||||
Sbjct: 214 gatgttattcttagaagcagggatggcgtaggctcgccgatgaaaccgacctgctttctc 273

                                                                       
Query: 546 tgccgcaagcgatattccccagacctgatgtacatccggtgtgagaggtgcagaaattgg 605
           |||  ||||| ||||    ||||| ||||||| ||||| || ||||| ||||||||||||
Sbjct: 274 tgcttcaagccatatcgatcagacttgatgtatatccgctgcgagagttgcagaaattgg 333

                                                                       
Query: 606 ttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgtacaga 665
           || |||||||||||| ||  ||| ||||| | |||||| ||| || | || |||||||||
Sbjct: 334 tttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgtacaga 393

                                                           
Query: 666 tgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713
           ||||||||||||||||||||| |  | |||  ||||||||||||||||
Sbjct: 394 tgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 441



 Score = 50.1 bits (25), Expect = 0.028
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                     
Query: 1316 accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372
            ||||||||||| |||||| | |||||| | || || ||||||||||||||| |||||
Sbjct: 796  accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 852



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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0074E19 map R1938, complete sequence
          Length = 160847

 Score = 81.8 bits (41), Expect = 8e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 601   attggttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgt 660
             ||||||| |||||||||||| ||  ||| ||||| | |||||| ||| || | || ||||
Sbjct: 19330 attggtttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgt 19271

                                                                  
Query: 661   acagatgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713
             |||||||||||||||||||||||||| |  | |||  ||||||||||||||||
Sbjct: 19270 acagatgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 19218



 Score = 50.1 bits (25), Expect = 0.028
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 1316  accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372
             ||||||||||| |||||| | |||||| | || || ||||||||||||||| |||||
Sbjct: 17896 accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 17840



 Score = 46.1 bits (23), Expect = 0.44
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 996   ccatatgatgcatgctttgcatggtat 1022
             ||||||||||||||| |||||||||||
Sbjct: 18198 ccatatgatgcatgcgttgcatggtat 18172



 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 698  atgtcctcattcagatgattat 719
            ||||||||||||||||||||||
Sbjct: 7917 atgtcctcattcagatgattat 7896



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 81.8 bits (41), Expect = 8e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 601     attggttccatggagatgccttgagactagaggaggcaaggattgctgaagtcatatcgt 660
               ||||||| |||||||||||| ||  ||| ||||| | |||||| ||| || | || ||||
Sbjct: 2243331 attggtttcatggagatgccctggaacttgaggaaggaaggatagctcaattgatttcgt 2243272

                                                                    
Query: 661     acagatgctgcagatgtcggaggagggcaataccgggatgtcctcattcagat 713
               |||||||||||||||||||||||||| |  | |||  ||||||||||||||||
Sbjct: 2243271 acagatgctgcagatgtcggaggaggccgttgccgaaatgtcctcattcagat 2243219



 Score = 50.1 bits (25), Expect = 0.028
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1316    accttggacaagcttcagaaaattgctctacaccaaatgaaggatattgccagccat 1372
               ||||||||||| |||||| | |||||| | || || ||||||||||||||| |||||
Sbjct: 2241897 accttggacaaacttcagcagattgctttgcatcatatgaaggatattgcctgccat 2241841



 Score = 46.1 bits (23), Expect = 0.44
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 996     ccatatgatgcatgctttgcatggtat 1022
               ||||||||||||||| |||||||||||
Sbjct: 2242199 ccatatgatgcatgcgttgcatggtat 2242173



 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 698     atgtcctcattcagatgattat 719
               ||||||||||||||||||||||
Sbjct: 2231918 atgtcctcattcagatgattat 2231897



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>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence
          Length = 175861

 Score = 46.1 bits (23), Expect = 0.44
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 1447   ccagagtagcctctaagactccagcac 1473
              ||||||||| |||||||||||||||||
Sbjct: 173736 ccagagtaggctctaagactccagcac 173762



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>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence
          Length = 192347

 Score = 46.1 bits (23), Expect = 0.44
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 1447  ccagagtagcctctaagactccagcac 1473
             ||||||||| |||||||||||||||||
Sbjct: 64808 ccagagtaggctctaagactccagcac 64834



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>ref|NM_001072283.1| Oryza sativa (japonica cultivar-group) Os11g0148700 (Os11g0148700)
            mRNA, complete cds
          Length = 3485

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 698  atgtcctcattcagatgattat 719
            ||||||||||||||||||||||
Sbjct: 2139 atgtcctcattcagatgattat 2160



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>gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete sequence
          Length = 86658

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 493   tccttggaagcaaggatggtgt 514
             ||||||||||||||||||||||
Sbjct: 34486 tccttggaagcaaggatggtgt 34507



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>dbj|AK066721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083G18, full
            insert sequence
          Length = 3485

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 698  atgtcctcattcagatgattat 719
            ||||||||||||||||||||||
Sbjct: 2139 atgtcctcattcagatgattat 2160



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>emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chromosome 2, complete
             sequence
          Length = 167210

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 758   aagtgcagctaatattccctca 779
             ||||||||||||||||||||||
Sbjct: 94751 aagtgcagctaatattccctca 94730



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>tpg|BK000383.1| TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively
              spliced, complete cds
          Length = 1421559

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1172   attcattcatattgccatgtg 1192
              |||||||||||||||||||||
Sbjct: 445824 attcattcatattgccatgtg 445844



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>gb|AC158652.5| Mus musculus 6 BAC RP23-238I17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217046

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   tggatcgaggagatggcctga 261
             |||||||||||||||||||||
Sbjct: 50474 tggatcgaggagatggcctga 50494



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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1172   attcattcatattgccatgtg 1192
              |||||||||||||||||||||
Sbjct: 445824 attcattcatattgccatgtg 445844



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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 493  tccttggaagcaaggatggtg 513
            |||||||||||||||||||||
Sbjct: 2328 tccttggaagcaaggatggtg 2308



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>gb|AC068931.6| Homo sapiens chromosome 8, clone RP11-650B11, complete sequence
          Length = 101474

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1172  attcattcatattgccatgtg 1192
             |||||||||||||||||||||
Sbjct: 11502 attcattcatattgccatgtg 11482



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>emb|AL442063.8| Human DNA sequence from clone RP11-8N6 on chromosome 9 Contains the 3'
             end of the MELK gene for maternal embryonic leucine zipper
             kinase (KIAA0175), complete sequence
          Length = 141833

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gggggagcagaaggaagaaaa 147
             |||||||||||||||||||||
Sbjct: 96868 gggggagcagaaggaagaaaa 96888



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>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence
          Length = 177019

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1172   attcattcatattgccatgtg 1192
              |||||||||||||||||||||
Sbjct: 175346 attcattcatattgccatgtg 175326



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>emb|AL353638.15| Human DNA sequence from clone RP11-338L20 on chromosome 9 Contains a
              ribosomal protein S26 pseudogene 3 and part the 5' UTR of
              the PTPRD gene for protein tyrosine phosphatase, receptor
              type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 161067

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 935    ttacaattcagcacattcatt 955
              |||||||||||||||||||||
Sbjct: 132669 ttacaattcagcacattcatt 132649



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>gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete sequence
          Length = 147688

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 493   tccttggaagcaaggatggtg 513
             |||||||||||||||||||||
Sbjct: 21819 tccttggaagcaaggatggtg 21839



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 942     tcagcacattcattcgataag 962
               |||||||||||||||||||||
Sbjct: 4660054 tcagcacattcattcgataag 4660074



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>gb|AC007305.40| Mus musculus strain 129/SvJ clone mgs1-211l20 map 6, complete sequence
          Length = 214840

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    tggatcgaggagatggcctga 261
              |||||||||||||||||||||
Sbjct: 132205 tggatcgaggagatggcctga 132225



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>emb|AJ326117.1|HSA326117 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-BG14C
          Length = 669

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 127 gggggagcagaaggaagaaaa 147
           |||||||||||||||||||||
Sbjct: 394 gggggagcagaaggaagaaaa 374



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>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence
          Length = 122744

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    tccttggaagcaaggatggtg 513
              |||||||||||||||||||||
Sbjct: 114445 tccttggaagcaaggatggtg 114425



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>emb|AL158141.14| Human DNA sequence from clone RP11-351K23 on chromosome X Contains the
             5' end of the IGBP1 gene for immunoglobulin (CD79A)
             binding protein 1, a NADH dehydrogenase 5 (MTND5)
             pseudogene, a cytochrome b family pseudogene, a novel
             gene, the 3' end of the ED1 gene for ectodermal dysplasia
             1, anhidrotic and three CpG islands, complete sequence
          Length = 184181

 Score = 42.1 bits (21), Expect = 6.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1082  cctgccagttcccacagtggagacc 1106
             |||||||| ||||||||||||||||
Sbjct: 81918 cctgccagatcccacagtggagacc 81942


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 304,929,598
Number of extensions: 15587101
Number of successful extensions: 291263
Number of sequences better than 10.0: 23
Number of HSP's gapped: 291260
Number of HSP's successfully gapped: 30
Length of query: 1817
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1794
Effective length of database: 18,503,978,556
Effective search space: 33196137529464
Effective search space used: 33196137529464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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