ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf31p20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR855125.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140A01, complete sequence Length = 102692 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 1512 catttcaggactgggtttcacagagtgcaacacagatagctactcaactatgtgggttcg 1571 |||| |||||||||| || |||| |||||| |||||||| || | || |||||||| | Sbjct: 90901 cattccaggactgggcctctcagaatgcaacgcagatagcaaccgagctttgtgggtttg 90960 Query: 1572 tgaccattgttgcagggacttttctacttcacaagac 1608 |||| ||||||||||| |||||||| || |||||||| Sbjct: 90961 tgacaattgttgcaggaacttttcttctgcacaagac 90997
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 1512 catttcaggactgggtttcacagagtgcaacacagatagctactcaactatgtgggttcg 1571 |||| |||||||||| || |||| |||||| |||||||| || | || |||||||| | Sbjct: 18203538 cattccaggactgggcctctcagaatgcaacgcagatagcaaccgagctttgtgggtttg 18203597 Query: 1572 tgaccattgttgcagggacttttctacttcacaagac 1608 |||| ||||||||||| |||||||| || |||||||| Sbjct: 18203598 tgacaattgttgcaggaacttttcttctgcacaagac 18203634
>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17, complete sequence Length = 147111 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 1512 catttcaggactgggtttcacagagtgcaacacagatagctactcaactatgtgggttcg 1571 |||| |||||||||| || |||| |||||| |||||||| || | || |||||||| | Sbjct: 39212 cattccaggactgggcctctcagaatgcaacgcagatagcaaccgagctttgtgggtttg 39271 Query: 1572 tgaccattgttgcagggacttttctacttcacaagac 1608 |||| ||||||||||| |||||||| || |||||||| Sbjct: 39272 tgacaattgttgcaggaacttttcttctgcacaagac 39308
>ref|NM_001059107.1| Oryza sativa (japonica cultivar-group) Os04g0373000 (Os04g0373000) mRNA, complete cds Length = 1170 Score = 61.9 bits (31), Expect = 8e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 1518 aggactgggtttcacagagtgcaacacagatagctactcaactatgtgggttcgtgacca 1577 ||||||||| || |||| |||||| |||||||| || | || |||||||| ||||| | Sbjct: 1004 aggactgggcctctcagaatgcaacgcagatagcaaccgagctttgtgggtttgtgacaa 1063 Query: 1578 ttgttgcagggacttttctacttcacaagac 1608 |||||||||| |||||||| || |||||||| Sbjct: 1064 ttgttgcaggaacttttcttctgcacaagac 1094
>ref|NM_001053433.1| Oryza sativa (japonica cultivar-group) Os02g0498300 (Os02g0498300) mRNA, complete cds Length = 1388 Score = 60.0 bits (30), Expect = 3e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 1537 tgcaacacagatagctactcaactatgtgggttcgtgaccattgttgcagggacttttct 1596 |||||||||||| || || || ||||||| || |||||||| |||||||| |||||||| Sbjct: 1016 tgcaacacagattgcaacacagttatgtggttttgtgaccatcgttgcaggaacttttct 1075 Query: 1597 acttcacaagacta 1610 || |||||||||| Sbjct: 1076 cctgcacaagacta 1089
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 60.0 bits (30), Expect = 3e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 1537 tgcaacacagatagctactcaactatgtgggttcgtgaccattgttgcagggacttttct 1596 |||||||||||| || || || ||||||| || |||||||| |||||||| |||||||| Sbjct: 17638853 tgcaacacagattgcaacacagttatgtggttttgtgaccatcgttgcaggaacttttct 17638912 Query: 1597 acttcacaagacta 1610 || |||||||||| Sbjct: 17638913 cctgcacaagacta 17638926
>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_D09 Length = 124026 Score = 60.0 bits (30), Expect = 3e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 1537 tgcaacacagatagctactcaactatgtgggttcgtgaccattgttgcagggacttttct 1596 |||||||||||| || || || ||||||| || |||||||| |||||||| |||||||| Sbjct: 108771 tgcaacacagattgcaacacagttatgtggttttgtgaccatcgttgcaggaacttttct 108830 Query: 1597 acttcacaagacta 1610 || |||||||||| Sbjct: 108831 cctgcacaagacta 108844
>dbj|AK070515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055G08, full insert sequence Length = 1391 Score = 60.0 bits (30), Expect = 3e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 1537 tgcaacacagatagctactcaactatgtgggttcgtgaccattgttgcagggacttttct 1596 |||||||||||| || || || ||||||| || |||||||| |||||||| |||||||| Sbjct: 1017 tgcaacacagattgcaacacagttatgtggttttgtgaccatcgttgcaggaacttttct 1076 Query: 1597 acttcacaagacta 1610 || |||||||||| Sbjct: 1077 cctgcacaagacta 1090
>ref|XM_001232200.1| PREDICTED: Gallus gallus zinc finger homeodomain 4, transcript variant 1 (ZFHX4), mRNA Length = 10816 Score = 50.1 bits (25), Expect = 0.031 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1644 caccaacacctccgccaccaccgccacct 1672 ||||| ||||||||||||||||||||||| Sbjct: 5837 caccaccacctccgccaccaccgccacct 5865
>ref|XM_425925.2| PREDICTED: Gallus gallus zinc finger homeodomain 4, transcript variant 2 (ZFHX4), mRNA Length = 10951 Score = 50.1 bits (25), Expect = 0.031 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1644 caccaacacctccgccaccaccgccacct 1672 ||||| ||||||||||||||||||||||| Sbjct: 5972 caccaccacctccgccaccaccgccacct 6000
>ref|XM_001234173.1| PREDICTED: Gallus gallus similar to iroquois 3 homeobox protein (LOC770853), mRNA Length = 888 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1644 caccaacacctccgccaccaccgccacc 1671 ||||| |||||||||||||||||||||| Sbjct: 250 caccaccacctccgccaccaccgccacc 277
>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08, complete sequence Length = 143955 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Minus Query: 439 cacttgcatcacattcaatcccaaaagt 466 |||||||||||||||||||| ||||||| Sbjct: 141344 cacttgcatcacattcaatctcaaaagt 141317
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Minus Query: 439 cacttgcatcacattcaatcccaaaagt 466 |||||||||||||||||||| ||||||| Sbjct: 8420300 cacttgcatcacattcaatctcaaaagt 8420273
>dbj|AP006730.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT45B09, TM0885b, complete sequence Length = 44466 Score = 48.1 bits (24), Expect = 0.12 Identities = 45/52 (86%) Strand = Plus / Minus Query: 1560 tatgtgggttcgtgaccattgttgcagggacttttctacttcacaagactaa 1611 |||||||||||||||| || || |||| |||||||| ||||||| |||||| Sbjct: 16147 tatgtgggttcgtgacaatactttcaggaacttttcttcttcacaggactaa 16096
>ref|XM_001188897.1| PREDICTED: Strongylocentrotus purpuratus similar to CR1 Danio rerio 2 reverse transcriptase (LOC574777), mRNA Length = 2877 Score = 46.1 bits (23), Expect = 0.48 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1643 gcaccaacacctccgccaccaccgcca 1669 ||||||||||||||||||| ||||||| Sbjct: 452 gcaccaacacctccgccacgaccgcca 426
>ref|XM_775160.2| PREDICTED: Strongylocentrotus purpuratus similar to CR1 Danio rerio 2 reverse transcriptase, transcript variant 3 (LOC574777), mRNA Length = 2877 Score = 46.1 bits (23), Expect = 0.48 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1643 gcaccaacacctccgccaccaccgcca 1669 ||||||||||||||||||| ||||||| Sbjct: 452 gcaccaacacctccgccacgaccgcca 426
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1650 cacctccgccaccaccgccacc 1671 |||||||||||||||||||||| Sbjct: 20899029 cacctccgccaccaccgccacc 20899008
>ref|NM_144026.1| Drosophila melanogaster CG11458-RA (CG11458), mRNA Length = 553 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1650 cacctccgccaccaccgccacc 1671 |||||||||||||||||||||| Sbjct: 135 cacctccgccaccaccgccacc 114
>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 199396 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1650 cacctccgccaccaccgccacc 1671 |||||||||||||||||||||| Sbjct: 136827 cacctccgccaccaccgccacc 136806
>emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 map Xq28, complete sequence Length = 150061 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1821 ttgtgttatgttttccttttacctgt 1846 ||||||| |||||||||||||||||| Sbjct: 135320 ttgtgttttgttttccttttacctgt 135295
>emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chromosome Xq25-27.1 Contains the TNFSF5 gene for tumor necrosis factor (ligand) superfamily (member 5 ,hyper-IgM syndrome), a novel gene, the 3' end of the ARHGEF6 gene for Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 and a CpG island, complete sequence Length = 175706 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1821 ttgtgttatgttttccttttacctgt 1846 ||||||| |||||||||||||||||| Sbjct: 108885 ttgtgttttgttttccttttacctgt 108860
>gb|AC125491.1| Homo sapiens 12 BAC RP11-235E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111264 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1810 gtagcatatagttgtgttatgttttc 1835 ||||||||||||||||||||| |||| Sbjct: 65413 gtagcatatagttgtgttatggtttc 65388
>ref|XM_784405.2| PREDICTED: Strongylocentrotus purpuratus similar to ENSANGP00000006560 (LOC584545), mRNA Length = 1578 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1650 cacctccgccaccaccgccac 1670 ||||||||||||||||||||| Sbjct: 1043 cacctccgccaccaccgccac 1063
>ref|XM_001191393.1| PREDICTED: Strongylocentrotus purpuratus similar to ENSANGP00000006560 (LOC584545), mRNA Length = 1578 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1650 cacctccgccaccaccgccac 1670 ||||||||||||||||||||| Sbjct: 1043 cacctccgccaccaccgccac 1063
>ref|NM_001063599.1| Oryza sativa (japonica cultivar-group) Os06g0199000 (Os06g0199000) mRNA, complete cds Length = 1107 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 383 cctccgccaccaccgccacct 363
>ref|XM_001081542.1| PREDICTED: Rattus norvegicus formin-like 1 (predicted) (Fmnl1_predicted), mRNA Length = 3579 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1644 caccaacacctccgccaccaccgccacct 1672 ||||||| ||||||||||| ||||||||| Sbjct: 1607 caccaacgcctccgccacctccgccacct 1635
>ref|XM_213487.4| PREDICTED: Rattus norvegicus formin-like 1 (predicted) (Fmnl1_predicted), mRNA Length = 3579 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1644 caccaacacctccgccaccaccgccacct 1672 ||||||| ||||||||||| ||||||||| Sbjct: 1607 caccaacgcctccgccacctccgccacct 1635
>ref|XR_004498.1| PREDICTED: Mus musculus RIKEN cDNA 2410017P09 gene (2410017P09Rik), misc RNA Length = 3932 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 2334 gaagtggttgcttctttcctt 2314
>ref|XR_001632.1| PREDICTED: Mus musculus RIKEN cDNA 2410017P09 gene (2410017P09Rik), misc RNA Length = 3932 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 2334 gaagtggttgcttctttcctt 2314
>ref|XM_967069.1| PREDICTED: Tribolium castaneum similar to CG7826-PA, isoform A (LOC660870), mRNA Length = 6249 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1649 acacctccgccaccaccgccacctg 1673 |||||| |||||||||||||||||| Sbjct: 3028 acacctacgccaccaccgccacctg 3052
>gb|AC165337.2| Mus musculus BAC clone RP24-356N8 from chromosome 12, complete sequence Length = 155881 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1349 ctgtaagattaattttgtaatactg 1373 |||||||||| |||||||||||||| Sbjct: 5018 ctgtaagattgattttgtaatactg 5042
>gb|BC033445.1| Mus musculus RIKEN cDNA 4833439L19 gene, mRNA (cDNA clone MGC:25451 IMAGE:4222839), complete cds Length = 2669 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1203 gaagtggttgcttctttcctt 1183
>gb|BC054417.1| Mus musculus RIKEN cDNA 4833439L19 gene, mRNA (cDNA clone MGC:62556 IMAGE:3969623), complete cds Length = 2629 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1169 gaagtggttgcttctttcctt 1149
>gb|BC043040.1| Mus musculus RIKEN cDNA 4833439L19 gene, mRNA (cDNA clone MGC:57935 IMAGE:5701249), complete cds Length = 2642 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1180 gaagtggttgcttctttcctt 1160
>gb|BC067010.1| Mus musculus RIKEN cDNA 2410017P09 gene, mRNA (cDNA clone IMAGE:6836671), partial cds Length = 3958 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 2334 gaagtggttgcttctttcctt 2314
>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence Length = 229184 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 917 cattgaggaaacggcataatctcct 941 ||||||||||| ||||||||||||| Sbjct: 105865 cattgaggaaaaggcataatctcct 105889
>gb|BC039775.1| Mus musculus RIKEN cDNA 4833439L19 gene, mRNA (cDNA clone MGC:49440 IMAGE:4239147), complete cds Length = 2621 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1162 gaagtggttgcttctttcctt 1142
>dbj|AK145025.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830027I08 product:Aa2-141 homolog [Rattus norvegicus], full insert sequence Length = 3010 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1190 gaagtggttgcttctttcctt 1170
>dbj|AK159945.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420039I05 product:Aa2-141 homolog [Rattus norvegicus], full insert sequence Length = 2602 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1187 gaagtggttgcttctttcctt 1167
>dbj|AK167616.1| Mus musculus 13 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530025E03 product:Aa2-141 homolog [Rattus norvegicus], full insert sequence Length = 2611 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1168 gaagtggttgcttctttcctt 1148
>dbj|AK169399.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920194N11 product:Aa2-141 homolog [Rattus norvegicus], full insert sequence Length = 2639 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1190 gaagtggttgcttctttcctt 1170
>gb|AC104669.6| Homo sapiens 3 BAC RP11-115I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135933 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 499 tatatgttttcttatccgatc 519 ||||||||||||||||||||| Sbjct: 45179 tatatgttttcttatccgatc 45199
>ref|NM_073745.1| Caenorhabditis elegans GRound-Like (grd related) family member (grl-23) (grl-23) mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 92 cctccgccaccaccgccacct 72
>dbj|AK028697.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732438K03 product:similar to KIAA1191 PROTEIN [Homo sapiens], full insert sequence Length = 2597 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1157 gaagtggttgcttctttcctt 1137
>emb|Z81053.1|CEE02A10 Caenorhabditis elegans Cosmid E02A10, complete sequence Length = 23889 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 12503 cctccgccaccaccgccacct 12523
>ref|NM_133797.1| Mus musculus RIKEN cDNA 4833439L19 gene (4833439L19Rik), mRNA dbj|AK004845.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300002B20 product:similar to KIAA1191 PROTEIN [Homo sapiens], full insert sequence Length = 2625 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1183 gaagtggttgcttctttcctt 1163
>dbj|AK014792.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833439L19 product:similar to KIAA1191 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 908 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 657 gaagtggttgcttctttcctt 637
>gb|AC093896.3| Homo sapiens BAC clone RP11-719N9 from 4, complete sequence Length = 156177 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1810 gtagcatatagttgtgttatgtttt 1834 |||||||||||||| |||||||||| Sbjct: 125634 gtagcatatagttgagttatgtttt 125658
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 5034292 cctccgccaccaccgccacct 5034272
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 ttttcctcttgtttgctttta 336 ||||||||||||||||||||| Sbjct: 2554385 ttttcctcttgtttgctttta 2554365
>emb|AL662875.14| Mouse DNA sequence from clone RP23-67E18 on chromosome 11 Contains the 3' end of the gene for the likely ortholog of H. sapiens C/EBP-induced protein (5730593F17Rik), the Ugalt2 gene for UDP-galactose translocator 2, the Spop gene for speckle-type POZ protein, the Nxph3 gene for neurexophilin 3, the Ngfr gene for nerve growth factor receptor (TNFR superfamily, member 16), the 5' end of a novel gene and a CpG island, complete sequence Length = 255199 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 acttttggttatgagaactgt 284 ||||||||||||||||||||| Sbjct: 110219 acttttggttatgagaactgt 110199
>gb|AC155262.2| Mus musculus BAC clone RP23-452K4 from chromosome 13, complete sequence Length = 168429 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 82287 gaagtggttgcttctttcctt 82307
>dbj|AK217329.1| Mus musculus cDNA, clone:Y2G0141G20, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 409 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 217 gaagtggttgcttctttcctt 197
>dbj|AK214948.1| Mus musculus cDNA, clone:Y2G0133H19, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 420 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 217 gaagtggttgcttctttcctt 197
>dbj|AK215307.1| Mus musculus cDNA, clone:Y2G0134K01, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 383 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 217 gaagtggttgcttctttcctt 197
>dbj|AK201111.1| Mus musculus cDNA, clone:Y1G0137A17, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 371 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 217 gaagtggttgcttctttcctt 197
>dbj|AK193083.1| Mus musculus cDNA, clone:Y1G0110P12, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 387 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 218 gaagtggttgcttctttcctt 198
>dbj|AK180100.1| Mus musculus cDNA, clone:Y0G0112O14, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053240, based on BLAT search Length = 442 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 217 gaagtggttgcttctttcctt 197
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 ttttcctcttgtttgctttta 336 ||||||||||||||||||||| Sbjct: 2487140 ttttcctcttgtttgctttta 2487120
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 76406 cctccgccaccaccgccacct 76386
>dbj|AK173126.1| Mus musculus mRNA for mKIAA1191 protein Length = 2580 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1373 gaagtggttgcttctttcctt 1393 ||||||||||||||||||||| Sbjct: 1137 gaagtggttgcttctttcctt 1117
>gb|AY954970.1| Staphylococcus phage Twort, complete genome Length = 130706 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1422 tggcataattatatgcattaataaa 1446 ||||| ||||||||||||||||||| Sbjct: 103823 tggcaaaattatatgcattaataaa 103799
>dbj|AK106381.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D12, full insert sequence Length = 1107 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 cctccgccaccaccgccacct 1672 ||||||||||||||||||||| Sbjct: 383 cctccgccaccaccgccacct 363
>emb|AL929174.19| Zebrafish DNA sequence from clone CH211-117C16 in linkage group 12, complete sequence Length = 161610 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 ttcttccccacatccatctct 357 ||||||||||||||||||||| Sbjct: 39802 ttcttccccacatccatctct 39782
>gb|AF162221.1|AF162221 Xestia c-nigrum granulovirus genome, complete sequence Length = 178733 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1651 acctccgccaccaccgccacc 1671 ||||||||||||||||||||| Sbjct: 21519 acctccgccaccaccgccacc 21539
>emb|CT571268.7| Mouse DNA sequence from clone RP23-275M21 on chromosome 12, complete sequence Length = 178441 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1349 ctgtaagattaattttgtaatactg 1373 |||||||||| |||||||||||||| Sbjct: 23222 ctgtaagattgattttgtaatactg 23198
>gb|AF080002.1|AF080002 Heliobacillus mobilis exopolyphosphatase Ppx (ppx) gene, partial cds; cobyric acid synthase CobQ (cobQ), UDP-N-acetylmuramyl tripeptide synthetase MurC (murC), glutamyl tRNA reductase HemA (hemA), photosynthesis gene cluster, complete sequence, stage II sporulation protein E Sp2E (sp2E), cell cycle protein MesJ (mesJ), and ATP-dependent zinc metallopeptidase FtsH (ftsH) genes, complete cds; and nucleoside diphosphate kinase B NdkB (ndkB) gene, partial cds Length = 35618 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1650 cacctccgccaccaccgccacctga 1674 |||||||||| |||||||||||||| Sbjct: 22095 cacctccgcctccaccgccacctga 22119
>dbj|AB059239.1| Oryza sativa CAI1 mRNA for glycine rich protein, complete cds Length = 947 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1644 caccaacacctccgccaccaccgccacct 1672 ||||| ||||||| ||||||||||||||| Sbjct: 267 caccaccacctcctccaccaccgccacct 239 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 354,733,759 Number of extensions: 18743017 Number of successful extensions: 402364 Number of sequences better than 10.0: 68 Number of HSP's gapped: 402364 Number of HSP's successfully gapped: 68 Length of query: 1966 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1943 Effective length of database: 18,503,978,556 Effective search space: 35953230334308 Effective search space used: 35953230334308 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
