ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf25j20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT009587.1| Triticum turgidum 127 1e-25
2gb|DQ995510.1| Hordeum vulgare clone 509d02_c-83 genomic sequence 68 1e-07
3gb|AC128239.4| Rattus norvegicus 4 BAC CH230-514E3 (Children's H... 48 0.11
4emb|CT025648.10| Zebrafish DNA sequence from clone CH211-22E22 i... 46 0.43
5emb|AL163541.13| Human DNA sequence from clone RP11-358F13 on ch... 46 0.43
6emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin c... 46 0.43
7emb|CT025673.8| Mouse DNA sequence from clone RP24-286H7 on chro... 46 0.43
8ref|XM_460671.1| Debaryomyces hansenii CBS767 hypothetical prote... 44 1.7
9gb|AC154875.8| Mus musculus chromosome 3, clone RP23-14O16, comp... 44 1.7
10emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 44 1.7
11emb|AL596122.14| Mouse DNA sequence from clone RP23-320E6 on chr... 44 1.7
12gb|AY037937.1| Ipomoea batatas soluble acid invertase FRUCT2 mRN... 44 1.7
13emb|BX294187.7| Zebrafish DNA sequence from clone CH211-233E16 i... 42 6.8
14ref|XM_001025205.1| Tetrahymena thermophila SB210 cation channel... 42 6.8
15gb|BC125828.1| Danio rerio cDNA clone MGC:152871 IMAGE:2602252, ... 42 6.8
16emb|CR855092.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 6.8
17gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 6.8
18gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome... 42 6.8
19gb|AC128699.4| Mus musculus BAC clone RP24-128L21 from chromosom... 42 6.8
20gb|U80447.1| Caenorhabditis elegans cosmid F55F8, complete sequence 42 6.8
21gb|AC130186.4| Atelerix albiventris clone LB4-244I20, complete s... 42 6.8
22ref|NM_059257.2| Caenorhabditis elegans PaTched Related family m... 42 6.8
23emb|CR688389.2|CNS0FU41 Tetraodon nigroviridis full-length cDNA 42 6.8
24gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Ca... 42 6.8
25ref|XM_687520.1| PREDICTED: Danio rerio similar to LOC495022 pro... 42 6.8
26emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 42 6.8
27emb|BX957344.6| Zebrafish DNA sequence from clone CH211-129N15 i... 42 6.8
28emb|AL590328.2|CNS07EG5 Human chromosome 14 DNA sequence BAC R-8... 42 6.8
29gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 42 6.8
30emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-7... 42 6.8
31gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, co... 42 6.8
32gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone... 42 6.8
33emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in... 42 6.8

>emb|CT009587.1| Triticum turgidum
          Length = 229209
 Score =  127 bits (64), Expect = 1e-25
 Identities = 185/225 (82%), Gaps = 4/225 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1252  ccatccgatgagctgagcctggaggttctagctcttctggaggacatcatgaagtccaag 1311
             ||||| || ||||||||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct: 24810 ccatcagacgagctgagccttgaggttcttgctcttctcgaggacatcatcaagtccaag 24869

                                                                         
Query: 1312  ctgtgcccggctgcctgcgtctcctgcttagtgcaggtcgggaagacctgcccgctgacg 1371
              ||||||| ||  |  ||||||||||||| |||||| | |||||||||||||| || |||
Sbjct: 24870 ttgtgccccgcaacacgcgtctcctgcttggtgcagattgggaagacctgccctctcacg 24929

                                                                         
Query: 1372  atgacgctgtttgctccctgcgtcctcgggaaggtgatgtcccagggttgcttcggcaag 1431
              ||| | |||| ||||||||| |||| || ||||| ||| |  | || |||||| |||||
Sbjct: 24930 ctgatgatgttcgctccctgcatccttggtaaggtcatggcggacgggtgcttcagcaag 24989

                                                          
Query: 1432  cagtgaagccatgagtgg----cttgctagcactgtgtgcgggtg 1472
              |||| ||||||| |||     ||||||||| |||||||||||||
Sbjct: 24990 gagtgcagccatgcgtgcgtgtcttgctagcgctgtgtgcgggtg 25034



 Score =  117 bits (59), Expect = 1e-22
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                         
Query: 837   ggtagcaactaattaaaatttatgcaaggttaccacacagtcgaaaaaggaagtaagaat 896
             |||||||| ||||||||||| || ||||||||||||| |||| || ||| ||||||||||
Sbjct: 24468 ggtagcaagtaattaaaattcattcaaggttaccacagagtcaaagaagaaagtaagaat 24527

                                                
Query: 897   gaagaagagcacatgtgcattgtggaggacacaaa 931
             ||||||||||||||| |||| ||||||||||||||
Sbjct: 24528 gaagaagagcacatgcgcatcgtggaggacacaaa 24562



 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 738   caatttagagatttgttcatcaggcctagctagcta 773
             |||||||||||||||||||||||||||| |||||||
Sbjct: 24364 caatttagagatttgttcatcaggcctacctagcta 24399



 Score = 44.1 bits (22), Expect = 1.7
 Identities = 53/63 (84%), Gaps = 4/63 (6%)
 Strand = Plus / Plus

                                                                         
Query: 1467  cgggtgcttcaggaagcagtgaagccatgagtgg----cttgctagcactgtgtgcgggt 1522
             |||||||||||| ||| |||| ||||||| |||     ||||||||| ||||||||||||
Sbjct: 24974 cgggtgcttcagcaaggagtgcagccatgcgtgcgtgtcttgctagcgctgtgtgcgggt 25033

                
Query: 1523  gtg 1525
             |||
Sbjct: 25034 gtg 25036



 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1683  ttgtctccacttaataaataccatc 1707
             ||||||||||||||| |||||||||
Sbjct: 25213 ttgtctccacttaattaataccatc 25237



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>gb|DQ995510.1| Hordeum vulgare clone 509d02_c-83 genomic sequence
          Length = 10179

 Score = 67.9 bits (34), Expect = 1e-07
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                      
Query: 504  caataatgttagacctacaaaggtttacttaaccttccaaactaattc-tctctcccc 560
            |||||||| ||||| ||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 5101 caataatgctagacttacaaaggtttacctaacctttcaaactaattcttctctcccc 5158



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>gb|AC128239.4| Rattus norvegicus 4 BAC CH230-514E3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 187607

 Score = 48.1 bits (24), Expect = 0.11
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 1507  agcactgtgtgcgggtgtgcatgt 1530
             ||||||||||||||||||||||||
Sbjct: 40757 agcactgtgtgcgggtgtgcatgt 40734



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>emb|CT025648.10| Zebrafish DNA sequence from clone CH211-22E22 in linkage group 5,
             complete sequence
          Length = 24336

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 549   ttctctctcccccactgattttc 571
             |||||||||||||||||||||||
Sbjct: 18747 ttctctctcccccactgattttc 18725



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>emb|AL163541.13| Human DNA sequence from clone RP11-358F13 on chromosome 13, complete
             sequence
          Length = 192305

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 1528  tgttgttgtggtgccttcttttcgttt 1554
             |||||||| ||||||||||||||||||
Sbjct: 47266 tgttgttgaggtgccttcttttcgttt 47292



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>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase,
           exons 1-9
          Length = 2942

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 522 aaaggtttacttaaccttccaaactaattct 552
           |||||||||||||||||| |||| |||||||
Sbjct: 125 aaaggtttacttaacctttcaaattaattct 155



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>emb|CT025673.8| Mouse DNA sequence from clone RP24-286H7 on chromosome 9, complete
              sequence
          Length = 148870

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 1622   actctcttgtgtgtgcctgtgtggttt 1648
              |||||||||||||||||||||| ||||
Sbjct: 107236 actctcttgtgtgtgcctgtgttgttt 107262



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>ref|XM_460671.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F07931g)
            partial mRNA
          Length = 3906

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 492  ttaatattcttccaataatgtt 513
            ||||||||||||||||||||||
Sbjct: 2416 ttaatattcttccaataatgtt 2395



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>gb|AC154875.8| Mus musculus chromosome 3, clone RP23-14O16, complete sequence
          Length = 225841

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1623   ctctcttgtgtgtgcctgtgtg 1644
              ||||||||||||||||||||||
Sbjct: 107480 ctctcttgtgtgtgcctgtgtg 107501



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 492    ttaatattcttccaataatgtt 513
              ||||||||||||||||||||||
Sbjct: 635433 ttaatattcttccaataatgtt 635412



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>emb|AL596122.14| Mouse DNA sequence from clone RP23-320E6 on chromosome 11 Contains the
              Taf15 gene for TAF15 RNA polymerase II TATA box binding
              protein (TBP)-associated factor, two novel genes, the Ccl5,
              Ccl9, Ccl6, Ccl3 and Ccl4 genes for chemokine (C-C motif)
              ligand 5, 9, 6, 3 and 4, a ribosomal protein L9 (Rpl9)
              pseudogene, three extracellular proteinase inhibitor (Expi)
              pseudogene and an H+ transporting mitochondrial F1F0
              complex ATP synthase subunit e (Atp5k) pseudogene,,
              complete sequence
          Length = 211873

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 306    tgaatatgtgatcagtggagggatgg 331
              ||||||||||| ||||||||||||||
Sbjct: 185012 tgaatatgtgagcagtggagggatgg 184987



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>gb|AY037937.1| Ipomoea batatas soluble acid invertase FRUCT2 mRNA, complete cds
          Length = 2207

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 616  tgtttgtatgtaaaatctgttt 637
            ||||||||||||||||||||||
Sbjct: 2136 tgtttgtatgtaaaatctgttt 2157



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>emb|BX294187.7| Zebrafish DNA sequence from clone CH211-233E16 in linkage group 16,
              complete sequence
          Length = 117562

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1662   ctctcctgttgtgtgtttcag 1682
              |||||||||||||||||||||
Sbjct: 105656 ctctcctgttgtgtgtttcag 105676



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>ref|XM_001025205.1| Tetrahymena thermophila SB210 cation channel family protein
           (TTHERM_00686030) mRNA, complete cds
          Length = 7785

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 476 cattttcttcctcttcttaat 496
           |||||||||||||||||||||
Sbjct: 73  cattttcttcctcttcttaat 53



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>gb|BC125828.1| Danio rerio cDNA clone MGC:152871 IMAGE:2602252, complete cds
          Length = 3640

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 895 atgaagaagagcacatgtgca 915
           |||||||||||||||||||||
Sbjct: 487 atgaagaagagcacatgtgca 507



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>emb|CR855092.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E09,
             complete sequence
          Length = 112325

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 550   tctctctcccccactgatttt 570
             |||||||||||||||||||||
Sbjct: 58468 tctctctcccccactgatttt 58488



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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 1221    gctggcccaggccagcgatga 1241
               |||||||||||||||||||||
Sbjct: 1392526 gctggcccaggccagcgatga 1392506



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>gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome 18, complete sequence
          Length = 140990

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1627  cttgtgtgtgcctgtgtggtt 1647
             |||||||||||||||||||||
Sbjct: 21209 cttgtgtgtgcctgtgtggtt 21229



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>gb|AC128699.4| Mus musculus BAC clone RP24-128L21 from chromosome 7, complete sequence
          Length = 152204

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 818   aatctgggattttaaaaaagg 838
             |||||||||||||||||||||
Sbjct: 96306 aatctgggattttaaaaaagg 96286



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>gb|U80447.1| Caenorhabditis elegans cosmid F55F8, complete sequence
          Length = 31048

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   tgtctgttggattttcagtcg 377
             |||||||||||||||||||||
Sbjct: 21153 tgtctgttggattttcagtcg 21173



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>gb|AC130186.4| Atelerix albiventris clone LB4-244I20, complete sequence
          Length = 150635

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1178  ggctgctctttctgctgcttctttc 1202
             |||| ||||||||||||||||||||
Sbjct: 80192 ggcttctctttctgctgcttctttc 80168



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>ref|NM_059257.2| Caenorhabditis elegans PaTched Related family member (ptr-10)
            (ptr-10) mRNA, complete cds
          Length = 2930

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 357  tgtctgttggattttcagtcg 377
            |||||||||||||||||||||
Sbjct: 2406 tgtctgttggattttcagtcg 2426



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>emb|CR688389.2|CNS0FU41 Tetraodon nigroviridis full-length cDNA
          Length = 1220

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1179 gctgctctttctgctgcttct 1199
            |||||||||||||||||||||
Sbjct: 666  gctgctctttctgctgcttct 646



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>gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123253

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 827    ttttaaaaaaggtagcaacta 847
              |||||||||||||||||||||
Sbjct: 100265 ttttaaaaaaggtagcaacta 100285



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>ref|XM_687520.1| PREDICTED: Danio rerio similar to LOC495022 protein (LOC564171),
           mRNA
          Length = 3027

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 895 atgaagaagagcacatgtgca 915
           |||||||||||||||||||||
Sbjct: 479 atgaagaagagcacatgtgca 499



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>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1662   ctctcctgttgtgtgtttcag 1682
              |||||||||||||||||||||
Sbjct: 130627 ctctcctgttgtgtgtttcag 130607



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>emb|BX957344.6| Zebrafish DNA sequence from clone CH211-129N15 in linkage group 19,
             complete sequence
          Length = 168128

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 895   atgaagaagagcacatgtgca 915
             |||||||||||||||||||||
Sbjct: 37916 atgaagaagagcacatgtgca 37936



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>emb|AL590328.2|CNS07EG5 Human chromosome 14 DNA sequence BAC R-818K5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175210

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 477    attttcttcctcttcttaatattct 501
              ||||||||||||||||||| |||||
Sbjct: 173390 attttcttcctcttcttaagattct 173366



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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 476   cattttcttcctcttcttaat 496
             |||||||||||||||||||||
Sbjct: 30750 cattttcttcctcttcttaat 30730



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>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200853

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 477   attttcttcctcttcttaatattct 501
             ||||||||||||||||||| |||||
Sbjct: 69372 attttcttcctcttcttaagattct 69348



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>gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, complete sequence
          Length = 181434

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 476  cattttcttcctcttcttaat 496
            |||||||||||||||||||||
Sbjct: 4623 cattttcttcctcttcttaat 4643



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>gb|AC104328.10| Mus musculus strain C57BL/6J chromosome 18 clone rp23-352p20, complete
             sequence
          Length = 183187

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1627  cttgtgtgtgcctgtgtggtt 1647
             |||||||||||||||||||||
Sbjct: 54971 cttgtgtgtgcctgtgtggtt 54951



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>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16,
             complete sequence
          Length = 184760

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1662  ctctcctgttgtgtgtttcag 1682
             |||||||||||||||||||||
Sbjct: 33178 ctctcctgttgtgtgtttcag 33198


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 341,522,138
Number of extensions: 18025386
Number of successful extensions: 408922
Number of sequences better than 10.0: 33
Number of HSP's gapped: 408920
Number of HSP's successfully gapped: 38
Length of query: 1773
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1750
Effective length of database: 18,503,978,556
Effective search space: 32381962473000
Effective search space used: 32381962473000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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