ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf25f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9HBG7:LY9_HUMAN T-lymphocyte surface antigen Ly-9 precursor - H... 35 1.7
2Q05681:PP2B_NEUCR Serine/threonine-protein phosphatase 2B cataly... 34 2.9
3Q14517:FATH_HUMAN Cadherin-related tumor suppressor homolog prec... 34 2.9
4Q5SNZ0:GRDN_MOUSE Girdin - Mus musculus (Mouse) 33 4.9
5Q3V6T2:GRDN_HUMAN Girdin - Homo sapiens (Human) 33 4.9
6O88280:SLIT3_RAT Slit homolog 3 protein precursor - Rattus norve... 32 8.4

>Q9HBG7:LY9_HUMAN T-lymphocyte surface antigen Ly-9 precursor - Homo sapiens (Human)|
          Length = 655
 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/103 (25%), Positives = 44/103 (42%)
 Frame = +3

Query: 1560 SFECQTKTVSGTEVCTTVGRLTPRIFGQMAAGVNVSLGLYQYGPFLVQLQDCTFVRDTFS 1739
            S  C  +    T + T        +  Q  + +NVS    +  P L         R +  
Sbjct: 380  SLTCSVEDGGNTVMYTWTPLQKEAVVSQGESHLNVSWRSSENHPNLTCTASNPVSRSSHQ 439

Query: 1740 NISQNYCPGLERYSKWVYIGLVLVSTAVMLSLIFWVIYARERR 1868
             +S+N C G ER +K ++IGL L+   + + +  W I+ R+ R
Sbjct: 440  FLSENICSGPERNTK-LWIGLFLMVCLLCVGIFSWCIWKRKGR 481



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>Q05681:PP2B_NEUCR Serine/threonine-protein phosphatase 2B catalytic subunit -|
            Neurospora crassa
          Length = 518

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 870  ENLRNLSDSLSAAKKVDIGQFLLPPSVLGEINEIQVKLNTSATDLATRTSKNSAKIQ 1040
            E ++N   S   A+KVD+    LPPS   E+ ++Q +    A + ATR + N  K+Q
Sbjct: 454  EGIKNAISSFEDARKVDLQNERLPPS-HDEVVKMQDEERAQALERATREADNDKKLQ 509



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>Q14517:FATH_HUMAN Cadherin-related tumor suppressor homolog precursor - Homo sapiens|
            (Human)
          Length = 4590

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +3

Query: 804  GKFHASTTTTLDFVVDQADFTVENLRNLSDS---LSAAKKVDIGQFLLPPSV 950
            GK HA+     D +    D  ++NL ++S +   L A KK+DIGQ+LL  SV
Sbjct: 3567 GKIHATDQDVYDTLTYSLDPQMDNLFSVSSTGGKLIAHKKLDIGQYLLNVSV 3618



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>Q5SNZ0:GRDN_MOUSE Girdin - Mus musculus (Mouse)|
          Length = 1873

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 2092 STEREQNQIRKH--QIHKNEKRINQQAAIKSTTQRSSNL 1982
            S E+E +Q+ K   Q+ K  KR+ QQA IK TT   +N+
Sbjct: 819  SLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNV 857



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>Q3V6T2:GRDN_HUMAN Girdin - Homo sapiens (Human)|
          Length = 1871

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 2092 STEREQNQIRKH--QIHKNEKRINQQAAIKSTTQRSSNL 1982
            S E+E +Q+ K   Q+ K  KR+ QQA IK TT   +N+
Sbjct: 819  SLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNV 857



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>O88280:SLIT3_RAT Slit homolog 3 protein precursor - Rattus norvegicus (Rat)|
          Length = 1523

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 1142 PCQHFGRCWMDTSHRDLYPVRC-IPSSAQRC 1231
            PCQH G C +  SHRD +   C +    QRC
Sbjct: 963  PCQHGGTCHLSESHRDGFSCSCPLGFEGQRC 993


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 356,526,471
Number of extensions: 7610328
Number of successful extensions: 24201
Number of sequences better than 10.0: 6
Number of HSP's gapped: 24156
Number of HSP's successfully gapped: 6
Length of query: 731
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 610
Effective length of database: 67,496,744
Effective search space: 41173013840
Effective search space used: 41173013840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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