ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf19j01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001061602.1| Oryza sativa (japonica cultivar-group) Os05g... 525 e-146
2dbj|AK107093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 525 e-146
3gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome... 299 1e-77
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 299 1e-77
5ref|NM_001064147.1| Oryza sativa (japonica cultivar-group) Os06g... 68 7e-08
6dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 7e-08
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-04
8dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-04
9gb|DQ245965.1| Zea mays clone 93628 mRNA sequence 54 0.001
10gb|AY105569.1| Zea mays PCO107462 mRNA sequence 54 0.001
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 48 0.061
12gb|AC118802.7| Rattus norvegicus 13 BAC CH230-72B9 (Children's H... 44 0.95
13emb|CR318592.7| Zebrafish DNA sequence from clone CH211-51F17 in... 44 0.95
14emb|CR855240.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 3.8
15dbj|AK237537.1| Sus scrofa mRNA, clone:SPL010058D09, expressed i... 42 3.8
16ref|NM_001069465.1| Oryza sativa (japonica cultivar-group) Os09g... 42 3.8
17ref|NM_001060074.1| Oryza sativa (japonica cultivar-group) Os04g... 42 3.8
18ref|XM_635698.1| Dictyostelium discoideum AX4 RNA-directed RNA p... 42 3.8
19gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 3.8
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
22emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 42 3.8
23emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 42 3.8
24emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 42 3.8
25emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chr... 42 3.8
26emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 ... 42 3.8
27dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
28dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
29dbj|AK103540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.8
30dbj|AK066088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.8
31emb|AL845356.8| Mouse DNA sequence from clone RP23-29O14 on chro... 42 3.8
32gb|AF117611.1|AF117611 Dictyostelium discoideum DosA protein (do... 42 3.8

>ref|NM_001061602.1| Oryza sativa (japonica cultivar-group) Os05g0272900 (Os05g0272900)
            mRNA, complete cds
          Length = 1130
 Score =  525 bits (265), Expect = e-146
 Identities = 570/669 (85%), Gaps = 2/669 (0%)
 Strand = Plus / Plus

                                                                        
Query: 58   gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117
            ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 345  gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 404

                                                                        
Query: 118  ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177
            ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 405  ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 464

                                                                        
Query: 178  cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237
            ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 465  cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 524

                                                                        
Query: 238  gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297
            || || ||||||||||||||||||||||| |  || ||  ||| ||||||||||||||| 
Sbjct: 525  ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 584

                                                                        
Query: 298  gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatgggatactctctgttt 357
            |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 585  gaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggatactctctgttt 644

                                                                        
Query: 358  cttgggctaattattgatcggctgcatcactatatcaggcaattacgggcgatgaagaaa 417
            |||||| |||||||||| ||||| ||||||||||||||| | |||||| | |||||||||
Sbjct: 645  cttgggttaattattgaccggctacatcactatatcagggagttacggaccatgaagaaa 704

                                                                        
Query: 418  aacatggaggctgtgacaaagcagagcagggtcttggaagaaacaaaactcggggactct 477
            |||||||||||||| |||||||||||||||  ||| |||||| ||||||   |||| | |
Sbjct: 705  aacatggaggctgtaacaaagcagagcaggaccttagaagaagcaaaac-atgggagtgt 763

                                                                        
Query: 478  -gaggaaattcaaagatatcagaaaaagattgacagtttgaatgagcaggtgcaagcact 536
             ||||| ||||||  |||||||||| |||||  ||| ||||||||||| ||||||| | |
Sbjct: 764  agaggagattcaacaatatcagaaagagatttccaggttgaatgagcaagtgcaagaatt 823

                                                                        
Query: 537  caaacaccagtcagaatctcaaacagaggagctaaaaactgctgaaattaataatttggc 596
            ||| |  | ||||||| |  |||| ||||| |||||||| ||||||   ||||  |||||
Sbjct: 824  caagcgtctgtcagaaacgaaaactgaggaactaaaaacagctgaagcgaataccttggc 883

                                                                        
Query: 597  tttacggaaacaatctgaaggtttgcttactgagtatgagcgtctaattgccgagaacga 656
            ||||| ||| |||||||||||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 884  tttacagaagcaatctgaaggtttgcttaccgagtatgagcgtctcatcgcagagaatga 943

                                                                        
Query: 657  ggaattgagaaataagctgcaaacaatggaaatccgcttctcccgttctgacagcaagaa 716
            |||||| || ||  | |||||  |||||||  ||||||| || | |||||| | ||| ||
Sbjct: 944  ggaattcaggaaccaactgcagtcaatggacctccgcttgtcgcattctgataacaaaaa 1003

                     
Query: 717  gaatacata 725
            |||||||||
Sbjct: 1004 gaatacata 1012



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>dbj|AK107093.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H04, full
            insert sequence
          Length = 1130

 Score =  525 bits (265), Expect = e-146
 Identities = 570/669 (85%), Gaps = 2/669 (0%)
 Strand = Plus / Plus

                                                                        
Query: 58   gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117
            ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 345  gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 404

                                                                        
Query: 118  ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177
            ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 405  ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 464

                                                                        
Query: 178  cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237
            ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 465  cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 524

                                                                        
Query: 238  gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297
            || || ||||||||||||||||||||||| |  || ||  ||| ||||||||||||||| 
Sbjct: 525  ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 584

                                                                        
Query: 298  gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatgggatactctctgttt 357
            |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 585  gaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggatactctctgttt 644

                                                                        
Query: 358  cttgggctaattattgatcggctgcatcactatatcaggcaattacgggcgatgaagaaa 417
            |||||| |||||||||| ||||| ||||||||||||||| | |||||| | |||||||||
Sbjct: 645  cttgggttaattattgaccggctacatcactatatcagggagttacggaccatgaagaaa 704

                                                                        
Query: 418  aacatggaggctgtgacaaagcagagcagggtcttggaagaaacaaaactcggggactct 477
            |||||||||||||| |||||||||||||||  ||| |||||| ||||||   |||| | |
Sbjct: 705  aacatggaggctgtaacaaagcagagcaggaccttagaagaagcaaaac-atgggagtgt 763

                                                                        
Query: 478  -gaggaaattcaaagatatcagaaaaagattgacagtttgaatgagcaggtgcaagcact 536
             ||||| ||||||  |||||||||| |||||  ||| ||||||||||| ||||||| | |
Sbjct: 764  agaggagattcaacaatatcagaaagagatttccaggttgaatgagcaagtgcaagaatt 823

                                                                        
Query: 537  caaacaccagtcagaatctcaaacagaggagctaaaaactgctgaaattaataatttggc 596
            ||| |  | ||||||| |  |||| ||||| |||||||| ||||||   ||||  |||||
Sbjct: 824  caagcgtctgtcagaaacgaaaactgaggaactaaaaacagctgaagcgaataccttggc 883

                                                                        
Query: 597  tttacggaaacaatctgaaggtttgcttactgagtatgagcgtctaattgccgagaacga 656
            ||||| ||| |||||||||||||||||||| |||||||||||||| || || ||||| ||
Sbjct: 884  tttacagaagcaatctgaaggtttgcttaccgagtatgagcgtctcatcgcagagaatga 943

                                                                        
Query: 657  ggaattgagaaataagctgcaaacaatggaaatccgcttctcccgttctgacagcaagaa 716
            |||||| || ||  | |||||  |||||||  ||||||| || | |||||| | ||| ||
Sbjct: 944  ggaattcaggaaccaactgcagtcaatggacctccgcttgtcgcattctgataacaaaaa 1003

                     
Query: 717  gaatacata 725
            |||||||||
Sbjct: 1004 gaatacata 1012



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>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBb0061M13, complete sequence
          Length = 174910

 Score =  299 bits (151), Expect = 1e-77
 Identities = 253/287 (88%)
 Strand = Plus / Minus

                                                                          
Query: 58     gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117
              ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 120923 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 120864

                                                                          
Query: 118    ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177
              ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 120863 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 120804

                                                                          
Query: 178    cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237
              ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 120803 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 120744

                                                                          
Query: 238    gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297
              || || ||||||||||||||||||||||| |  || ||  ||| ||||||||||||||| 
Sbjct: 120743 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 120684

                                                             
Query: 298    gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
              |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 120683 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatggg 120637



 Score =  230 bits (116), Expect = 8e-57
 Identities = 319/384 (83%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                          
Query: 343    ggatactctctgtttcttgggctaattattgatcggctgcatcactatatcaggcaatta 402
              ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||
Sbjct: 118543 ggatactctctgtttcttgggttaattattgaccggctacatcactatatcagggagtta 118484

                                                                          
Query: 403    cgggcgatgaagaaaaacatggaggctgtgacaaagcagagcagggtcttggaagaaaca 462
              ||| | ||||||||||||||||||||||| |||||||||||||||  ||| |||||| ||
Sbjct: 118483 cggaccatgaagaaaaacatggaggctgtaacaaagcagagcaggaccttagaagaagca 118424

                                                                          
Query: 463    aaactcggggactct-gaggaaattcaaagatatcagaaaaagattgacagtttgaatga 521
              ||||   |||| | | ||||| ||||||  |||||||||| |||||  ||| ||||||||
Sbjct: 118423 aaac-atgggagtgtagaggagattcaacaatatcagaaagagatttccaggttgaatga 118365

                                                                          
Query: 522    gcaggtgcaagcactcaaacaccagtcagaatctcaaacagaggagctaaaaactgctga 581
              ||| ||||||| | |||| |  | ||||||| |  |||| ||||| |||||||| |||||
Sbjct: 118364 gcaagtgcaagaattcaagcgtctgtcagaaacgaaaactgaggaactaaaaacagctga 118305

                                                                          
Query: 582    aattaataatttggctttacggaaacaatctgaaggtttgcttactgagtatgagcgtct 641
              |   ||||  |||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 118304 agcgaataccttggctttacagaagcaatctgaaggtttgcttaccgagtatgagcgtct 118245

                                                                          
Query: 642    aattgccgagaacgaggaattgagaaataagctgcaaacaatggaaatccgcttctcccg 701
               || || ||||| |||||||| || ||  | |||||  |||||||  ||||||| || | 
Sbjct: 118244 catcgcagagaatgaggaattcaggaaccaactgcagtcaatggacctccgcttgtcgca 118185

                                      
Query: 702    ttctgacagcaagaagaatacata 725
              |||||| | ||| |||||||||||
Sbjct: 118184 ttctgataacaaaaagaatacata 118161



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score =  299 bits (151), Expect = 1e-77
 Identities = 253/287 (88%)
 Strand = Plus / Minus

                                                                            
Query: 58       gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117
                ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 10951719 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 10951660

                                                                            
Query: 118      ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177
                ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 10951659 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 10951600

                                                                            
Query: 178      cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237
                ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 10951599 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 10951540

                                                                            
Query: 238      gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297
                || || ||||||||||||||||||||||| |  || ||  ||| ||||||||||||||| 
Sbjct: 10951539 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 10951480

                                                               
Query: 298      gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
                |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 10951479 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatggg 10951433



 Score =  230 bits (116), Expect = 8e-57
 Identities = 319/384 (83%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                            
Query: 343      ggatactctctgtttcttgggctaattattgatcggctgcatcactatatcaggcaatta 402
                ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||
Sbjct: 10949339 ggatactctctgtttcttgggttaattattgaccggctacatcactatatcagggagtta 10949280

                                                                            
Query: 403      cgggcgatgaagaaaaacatggaggctgtgacaaagcagagcagggtcttggaagaaaca 462
                ||| | ||||||||||||||||||||||| |||||||||||||||  ||| |||||| ||
Sbjct: 10949279 cggaccatgaagaaaaacatggaggctgtaacaaagcagagcaggaccttagaagaagca 10949220

                                                                            
Query: 463      aaactcggggactct-gaggaaattcaaagatatcagaaaaagattgacagtttgaatga 521
                ||||   |||| | | ||||| ||||||  |||||||||| |||||  ||| ||||||||
Sbjct: 10949219 aaac-atgggagtgtagaggagattcaacaatatcagaaagagatttccaggttgaatga 10949161

                                                                            
Query: 522      gcaggtgcaagcactcaaacaccagtcagaatctcaaacagaggagctaaaaactgctga 581
                ||| ||||||| | |||| |  | ||||||| |  |||| ||||| |||||||| |||||
Sbjct: 10949160 gcaagtgcaagaattcaagcgtctgtcagaaacgaaaactgaggaactaaaaacagctga 10949101

                                                                            
Query: 582      aattaataatttggctttacggaaacaatctgaaggtttgcttactgagtatgagcgtct 641
                |   ||||  |||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 10949100 agcgaataccttggctttacagaagcaatctgaaggtttgcttaccgagtatgagcgtct 10949041

                                                                            
Query: 642      aattgccgagaacgaggaattgagaaataagctgcaaacaatggaaatccgcttctcccg 701
                 || || ||||| |||||||| || ||  | |||||  |||||||  ||||||| || | 
Sbjct: 10949040 catcgcagagaatgaggaattcaggaaccaactgcagtcaatggacctccgcttgtcgca 10948981

                                        
Query: 702      ttctgacagcaagaagaatacata 725
                |||||| | ||| |||||||||||
Sbjct: 10948980 ttctgataacaaaaagaatacata 10948957



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>ref|NM_001064147.1| Oryza sativa (japonica cultivar-group) Os06g0367500 (Os06g0367500)
           mRNA, partial cds
          Length = 1070

 Score = 67.9 bits (34), Expect = 7e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
           |||||| ||||| |||||||| |||  |  ||| ||||||||||||||||||||||||||
Sbjct: 225 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 284

                 
Query: 345 atactc 350
           ||||||
Sbjct: 285 atactc 290



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
           ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 90  caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 149

                      
Query: 228 cggctccagcg 238
           || ||||||||
Sbjct: 150 cgcctccagcg 160



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>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full
           insert sequence
          Length = 1070

 Score = 67.9 bits (34), Expect = 7e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
           |||||| ||||| |||||||| |||  |  ||| ||||||||||||||||||||||||||
Sbjct: 225 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 284

                 
Query: 345 atactc 350
           ||||||
Sbjct: 285 atactc 290



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
           ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 90  caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 149

                      
Query: 228 cggctccagcg 238
           || ||||||||
Sbjct: 150 cgcctccagcg 160



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 285      gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
                |||||| ||||| |||||||| |||  |  ||| ||||||||||||||||||||||||||
Sbjct: 15226806 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 15226747



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 168      caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
                ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 15226941 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 15226882

                           
Query: 228      cggctccagcg 238
                || ||||||||
Sbjct: 15226881 cgcctccagcg 15226871



 Score = 44.1 bits (22), Expect = 0.95
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 61       atgatccagctgatgttcacgctgct 86
                ||||||||||||||||||||| ||||
Sbjct: 15227048 atgatccagctgatgttcacggtgct 15227023



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>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0015G09
          Length = 140893

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                          
Query: 285    gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344
              |||||| ||||| |||||||| |||  |  ||| ||||||||||||||||||||||||||
Sbjct: 101320 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 101261



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                          
Query: 168    caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
              ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 101455 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 101396

                         
Query: 228    cggctccagcg 238
              || ||||||||
Sbjct: 101395 cgcctccagcg 101385



 Score = 44.1 bits (22), Expect = 0.95
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 61     atgatccagctgatgttcacgctgct 86
              ||||||||||||||||||||| ||||
Sbjct: 101562 atgatccagctgatgttcacggtgct 101537



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>gb|DQ245965.1| Zea mays clone 93628 mRNA sequence
          Length = 845

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 316 cgacacctcctcgaggcctcgctcatgggatactc 350
           ||||||||||||||||| || ||||||||||||||
Sbjct: 354 cgacacctcctcgaggcgtcactcatgggatactc 388



 Score = 44.1 bits (22), Expect = 0.95
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
           |||||| ||||||||||| || ||||  || ||  ||||||||||| |||| ||||||||
Sbjct: 188 caagcggggccgcgggcctgtcatggtgcgcaccatcgcggccaccgtgcttgtcgtgct 247

             
Query: 228 cg 229
           ||
Sbjct: 248 cg 249



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>gb|AY105569.1| Zea mays PCO107462 mRNA sequence
          Length = 1024

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 316 cgacacctcctcgaggcctcgctcatgggatactc 350
           ||||||||||||||||| || ||||||||||||||
Sbjct: 463 cgacacctcctcgaggcgtcactcatgggatactc 497



 Score = 52.0 bits (26), Expect = 0.004
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227
           |||||| |||||||||||||| ||||  || ||  ||||||||||| |||| ||||||||
Sbjct: 297 caagcggggccgcgggcccgtcatggtgcgcaccatcgcggccaccgtgcttgtcgtgct 356

             
Query: 228 cg 229
           ||
Sbjct: 357 cg 358



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 48.1 bits (24), Expect = 0.061
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 79     acgctgctggccgccgaggcagcgctgg 106
              ||||||||||||||||||| ||||||||
Sbjct: 719263 acgctgctggccgccgaggaagcgctgg 719290



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>gb|AC118802.7| Rattus norvegicus 13 BAC CH230-72B9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 239935

 Score = 44.1 bits (22), Expect = 0.95
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 570   aaaaactgctgaaattaataat 591
             ||||||||||||||||||||||
Sbjct: 45066 aaaaactgctgaaattaataat 45087



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>emb|CR318592.7| Zebrafish DNA sequence from clone CH211-51F17 in linkage group 19,
             complete sequence
          Length = 124310

 Score = 44.1 bits (22), Expect = 0.95
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 759   tactgtaaatttttgtcatataatgttatt 788
             |||||||||||| |||||| ||||||||||
Sbjct: 77611 tactgtaaatttctgtcatttaatgttatt 77582



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>emb|CR855240.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0103C08-B0602B01,
             complete sequence
          Length = 150079

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ccgcgccaagccgccaaccac 34
             |||||||||||||||||||||
Sbjct: 86389 ccgcgccaagccgccaaccac 86409



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>dbj|AK237537.1| Sus scrofa mRNA, clone:SPL010058D09, expressed in spleen
          Length = 1336

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  cgccgaggcagcgctggtgct 110
           |||||||||||||||||||||
Sbjct: 496 cgccgaggcagcgctggtgct 516



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>ref|NM_001069465.1| Oryza sativa (japonica cultivar-group) Os09g0344400 (Os09g0344400)
           mRNA, complete cds
          Length = 1530

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  cgccgaggcagcgctggtgct 110
           |||||||||||||||||||||
Sbjct: 637 cgccgaggcagcgctggtgct 617



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>ref|NM_001060074.1| Oryza sativa (japonica cultivar-group) Os04g0559200 (Os04g0559200)
           mRNA, complete cds
          Length = 4069

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 14  ccgcgccaagccgccaaccac 34
           |||||||||||||||||||||
Sbjct: 184 ccgcgccaagccgccaaccac 164



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>ref|XM_635698.1| Dictyostelium discoideum AX4 RNA-directed RNA polymerase (rrpC) mRNA,
            complete cds
          Length = 6858

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 569  taaaaactgctgaaattaataattt 593
            |||||||| ||||||||||||||||
Sbjct: 5495 taaaaactactgaaattaataattt 5519



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 78      cacgctgctggccgccgaggcagcgctggtgct 110
               ||||||||||| ||||||||  |||||||||||
Sbjct: 1367498 cacgctgctggtcgccgaggaggcgctggtgct 1367530



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 90       cgccgaggcagcgctggtgct 110
                |||||||||||||||||||||
Sbjct: 10681587 cgccgaggcagcgctggtgct 10681567



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 103      ctggtgctcgtgctgctcttccgca 127
                |||||||||||| ||||||||||||
Sbjct: 27637448 ctggtgctcgtggtgctcttccgca 27637472



 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 14       ccgcgccaagccgccaaccac 34
                |||||||||||||||||||||
Sbjct: 27995058 ccgcgccaagccgccaaccac 27995078



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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
            complete sequence
          Length = 147806

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 14   ccgcgccaagccgccaaccac 34
            |||||||||||||||||||||
Sbjct: 2283 ccgcgccaagccgccaaccac 2303



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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
              complete sequence
          Length = 167269

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ccgcgccaagccgccaaccac 34
              |||||||||||||||||||||
Sbjct: 157911 ccgcgccaagccgccaaccac 157931



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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 103   ctggtgctcgtgctgctcttccgca 127
             |||||||||||| ||||||||||||
Sbjct: 68077 ctggtgctcgtggtgctcttccgca 68101



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>emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chromosome 4 Contains a
             novel peudogene and a CpG island, complete sequence
          Length = 156075

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   gactctgaggaaattcaaaga 492
             |||||||||||||||||||||
Sbjct: 79160 gactctgaggaaattcaaaga 79140



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>emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 in linkage group 19,
             complete sequence
          Length = 178832

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 939   tttttgatatttcggaaataatatt 963
             |||||||||||| ||||||||||||
Sbjct: 40713 tttttgatattttggaaataatatt 40689



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>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0057I13
          Length = 156330

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 90     cgccgaggcagcgctggtgct 110
              |||||||||||||||||||||
Sbjct: 133899 cgccgaggcagcgctggtgct 133879



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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    cgccgaggcagcgctggtgct 110
             |||||||||||||||||||||
Sbjct: 18205 cgccgaggcagcgctggtgct 18185



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>dbj|AK103540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C04, full
           insert sequence
          Length = 1533

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 90  cgccgaggcagcgctggtgct 110
           |||||||||||||||||||||
Sbjct: 638 cgccgaggcagcgctggtgct 618



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>dbj|AK066088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051G09, full
           insert sequence
          Length = 4070

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 14  ccgcgccaagccgccaaccac 34
           |||||||||||||||||||||
Sbjct: 185 ccgcgccaagccgccaaccac 165



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>emb|AL845356.8| Mouse DNA sequence from clone RP23-29O14 on chromosome 2, complete
             sequence
          Length = 141599

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   gactctgaggaaattcaaaga 492
             |||||||||||||||||||||
Sbjct: 60831 gactctgaggaaattcaaaga 60811



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>gb|AF117611.1|AF117611 Dictyostelium discoideum DosA protein (dosA) gene, complete cds
          Length = 4978

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 569  taaaaactgctgaaattaataattt 593
            |||||||| ||||||||||||||||
Sbjct: 2410 taaaaactactgaaattaataattt 2434


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 181,919,128
Number of extensions: 11179903
Number of successful extensions: 261894
Number of sequences better than 10.0: 32
Number of HSP's gapped: 261882
Number of HSP's successfully gapped: 47
Length of query: 997
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 974
Effective length of database: 18,503,978,556
Effective search space: 18022875113544
Effective search space used: 18022875113544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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