| Clone Name | FLbaf19j01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061602.1| Oryza sativa (japonica cultivar-group) Os05g0272900 (Os05g0272900) mRNA, complete cds Length = 1130 Score = 525 bits (265), Expect = e-146 Identities = 570/669 (85%), Gaps = 2/669 (0%) Strand = Plus / Plus Query: 58 gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117 ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 345 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 404 Query: 118 ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177 |||||||||||||| ||||||||||||||||||||| ||||| || ||||||||| Sbjct: 405 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 464 Query: 178 cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237 ||||| ||||| |||| | ||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 465 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 524 Query: 238 gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297 || || ||||||||||||||||||||||| | || || ||| ||||||||||||||| Sbjct: 525 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 584 Query: 298 gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatgggatactctctgttt 357 |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 585 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggatactctctgttt 644 Query: 358 cttgggctaattattgatcggctgcatcactatatcaggcaattacgggcgatgaagaaa 417 |||||| |||||||||| ||||| ||||||||||||||| | |||||| | ||||||||| Sbjct: 645 cttgggttaattattgaccggctacatcactatatcagggagttacggaccatgaagaaa 704 Query: 418 aacatggaggctgtgacaaagcagagcagggtcttggaagaaacaaaactcggggactct 477 |||||||||||||| ||||||||||||||| ||| |||||| |||||| |||| | | Sbjct: 705 aacatggaggctgtaacaaagcagagcaggaccttagaagaagcaaaac-atgggagtgt 763 Query: 478 -gaggaaattcaaagatatcagaaaaagattgacagtttgaatgagcaggtgcaagcact 536 ||||| |||||| |||||||||| ||||| ||| ||||||||||| ||||||| | | Sbjct: 764 agaggagattcaacaatatcagaaagagatttccaggttgaatgagcaagtgcaagaatt 823 Query: 537 caaacaccagtcagaatctcaaacagaggagctaaaaactgctgaaattaataatttggc 596 ||| | | ||||||| | |||| ||||| |||||||| |||||| |||| ||||| Sbjct: 824 caagcgtctgtcagaaacgaaaactgaggaactaaaaacagctgaagcgaataccttggc 883 Query: 597 tttacggaaacaatctgaaggtttgcttactgagtatgagcgtctaattgccgagaacga 656 ||||| ||| |||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 884 tttacagaagcaatctgaaggtttgcttaccgagtatgagcgtctcatcgcagagaatga 943 Query: 657 ggaattgagaaataagctgcaaacaatggaaatccgcttctcccgttctgacagcaagaa 716 |||||| || || | ||||| ||||||| ||||||| || | |||||| | ||| || Sbjct: 944 ggaattcaggaaccaactgcagtcaatggacctccgcttgtcgcattctgataacaaaaa 1003 Query: 717 gaatacata 725 ||||||||| Sbjct: 1004 gaatacata 1012
>dbj|AK107093.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H04, full insert sequence Length = 1130 Score = 525 bits (265), Expect = e-146 Identities = 570/669 (85%), Gaps = 2/669 (0%) Strand = Plus / Plus Query: 58 gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117 ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 345 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 404 Query: 118 ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177 |||||||||||||| ||||||||||||||||||||| ||||| || ||||||||| Sbjct: 405 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 464 Query: 178 cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237 ||||| ||||| |||| | ||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 465 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 524 Query: 238 gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297 || || ||||||||||||||||||||||| | || || ||| ||||||||||||||| Sbjct: 525 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 584 Query: 298 gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatgggatactctctgttt 357 |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 585 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggatactctctgttt 644 Query: 358 cttgggctaattattgatcggctgcatcactatatcaggcaattacgggcgatgaagaaa 417 |||||| |||||||||| ||||| ||||||||||||||| | |||||| | ||||||||| Sbjct: 645 cttgggttaattattgaccggctacatcactatatcagggagttacggaccatgaagaaa 704 Query: 418 aacatggaggctgtgacaaagcagagcagggtcttggaagaaacaaaactcggggactct 477 |||||||||||||| ||||||||||||||| ||| |||||| |||||| |||| | | Sbjct: 705 aacatggaggctgtaacaaagcagagcaggaccttagaagaagcaaaac-atgggagtgt 763 Query: 478 -gaggaaattcaaagatatcagaaaaagattgacagtttgaatgagcaggtgcaagcact 536 ||||| |||||| |||||||||| ||||| ||| ||||||||||| ||||||| | | Sbjct: 764 agaggagattcaacaatatcagaaagagatttccaggttgaatgagcaagtgcaagaatt 823 Query: 537 caaacaccagtcagaatctcaaacagaggagctaaaaactgctgaaattaataatttggc 596 ||| | | ||||||| | |||| ||||| |||||||| |||||| |||| ||||| Sbjct: 824 caagcgtctgtcagaaacgaaaactgaggaactaaaaacagctgaagcgaataccttggc 883 Query: 597 tttacggaaacaatctgaaggtttgcttactgagtatgagcgtctaattgccgagaacga 656 ||||| ||| |||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 884 tttacagaagcaatctgaaggtttgcttaccgagtatgagcgtctcatcgcagagaatga 943 Query: 657 ggaattgagaaataagctgcaaacaatggaaatccgcttctcccgttctgacagcaagaa 716 |||||| || || | ||||| ||||||| ||||||| || | |||||| | ||| || Sbjct: 944 ggaattcaggaaccaactgcagtcaatggacctccgcttgtcgcattctgataacaaaaa 1003 Query: 717 gaatacata 725 ||||||||| Sbjct: 1004 gaatacata 1012
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBb0061M13, complete sequence Length = 174910 Score = 299 bits (151), Expect = 1e-77 Identities = 253/287 (88%) Strand = Plus / Minus Query: 58 gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117 ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 120923 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 120864 Query: 118 ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177 |||||||||||||| ||||||||||||||||||||| ||||| || ||||||||| Sbjct: 120863 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 120804 Query: 178 cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237 ||||| ||||| |||| | ||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 120803 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 120744 Query: 238 gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297 || || ||||||||||||||||||||||| | || || ||| ||||||||||||||| Sbjct: 120743 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 120684 Query: 298 gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||||||||||||||||| |||||||||||||| || |||||||| Sbjct: 120683 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatggg 120637 Score = 230 bits (116), Expect = 8e-57 Identities = 319/384 (83%), Gaps = 2/384 (0%) Strand = Plus / Minus Query: 343 ggatactctctgtttcttgggctaattattgatcggctgcatcactatatcaggcaatta 402 ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | ||| Sbjct: 118543 ggatactctctgtttcttgggttaattattgaccggctacatcactatatcagggagtta 118484 Query: 403 cgggcgatgaagaaaaacatggaggctgtgacaaagcagagcagggtcttggaagaaaca 462 ||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 118483 cggaccatgaagaaaaacatggaggctgtaacaaagcagagcaggaccttagaagaagca 118424 Query: 463 aaactcggggactct-gaggaaattcaaagatatcagaaaaagattgacagtttgaatga 521 |||| |||| | | ||||| |||||| |||||||||| ||||| ||| |||||||| Sbjct: 118423 aaac-atgggagtgtagaggagattcaacaatatcagaaagagatttccaggttgaatga 118365 Query: 522 gcaggtgcaagcactcaaacaccagtcagaatctcaaacagaggagctaaaaactgctga 581 ||| ||||||| | |||| | | ||||||| | |||| ||||| |||||||| ||||| Sbjct: 118364 gcaagtgcaagaattcaagcgtctgtcagaaacgaaaactgaggaactaaaaacagctga 118305 Query: 582 aattaataatttggctttacggaaacaatctgaaggtttgcttactgagtatgagcgtct 641 | |||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| Sbjct: 118304 agcgaataccttggctttacagaagcaatctgaaggtttgcttaccgagtatgagcgtct 118245 Query: 642 aattgccgagaacgaggaattgagaaataagctgcaaacaatggaaatccgcttctcccg 701 || || ||||| |||||||| || || | ||||| ||||||| ||||||| || | Sbjct: 118244 catcgcagagaatgaggaattcaggaaccaactgcagtcaatggacctccgcttgtcgca 118185 Query: 702 ttctgacagcaagaagaatacata 725 |||||| | ||| ||||||||||| Sbjct: 118184 ttctgataacaaaaagaatacata 118161
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 299 bits (151), Expect = 1e-77 Identities = 253/287 (88%) Strand = Plus / Minus Query: 58 gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 117 ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 10951719 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 10951660 Query: 118 ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 177 |||||||||||||| ||||||||||||||||||||| ||||| || ||||||||| Sbjct: 10951659 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 10951600 Query: 178 cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 237 ||||| ||||| |||| | ||| ||||| |||||||||||||||||||| ||||||||| Sbjct: 10951599 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 10951540 Query: 238 gggtatagcatcgccaagatccggcgccgcgaaggcgagttcgcccagctcacgcccaca 297 || || ||||||||||||||||||||||| | || || ||| ||||||||||||||| Sbjct: 10951539 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgcccacc 10951480 Query: 298 gaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||||||||||||||||| |||||||||||||| || |||||||| Sbjct: 10951479 gaccaggtgctcgccagccgccacctcctcgaggcatccctcatggg 10951433 Score = 230 bits (116), Expect = 8e-57 Identities = 319/384 (83%), Gaps = 2/384 (0%) Strand = Plus / Minus Query: 343 ggatactctctgtttcttgggctaattattgatcggctgcatcactatatcaggcaatta 402 ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | ||| Sbjct: 10949339 ggatactctctgtttcttgggttaattattgaccggctacatcactatatcagggagtta 10949280 Query: 403 cgggcgatgaagaaaaacatggaggctgtgacaaagcagagcagggtcttggaagaaaca 462 ||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 10949279 cggaccatgaagaaaaacatggaggctgtaacaaagcagagcaggaccttagaagaagca 10949220 Query: 463 aaactcggggactct-gaggaaattcaaagatatcagaaaaagattgacagtttgaatga 521 |||| |||| | | ||||| |||||| |||||||||| ||||| ||| |||||||| Sbjct: 10949219 aaac-atgggagtgtagaggagattcaacaatatcagaaagagatttccaggttgaatga 10949161 Query: 522 gcaggtgcaagcactcaaacaccagtcagaatctcaaacagaggagctaaaaactgctga 581 ||| ||||||| | |||| | | ||||||| | |||| ||||| |||||||| ||||| Sbjct: 10949160 gcaagtgcaagaattcaagcgtctgtcagaaacgaaaactgaggaactaaaaacagctga 10949101 Query: 582 aattaataatttggctttacggaaacaatctgaaggtttgcttactgagtatgagcgtct 641 | |||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| Sbjct: 10949100 agcgaataccttggctttacagaagcaatctgaaggtttgcttaccgagtatgagcgtct 10949041 Query: 642 aattgccgagaacgaggaattgagaaataagctgcaaacaatggaaatccgcttctcccg 701 || || ||||| |||||||| || || | ||||| ||||||| ||||||| || | Sbjct: 10949040 catcgcagagaatgaggaattcaggaaccaactgcagtcaatggacctccgcttgtcgca 10948981 Query: 702 ttctgacagcaagaagaatacata 725 |||||| | ||| ||||||||||| Sbjct: 10948980 ttctgataacaaaaagaatacata 10948957
>ref|NM_001064147.1| Oryza sativa (japonica cultivar-group) Os06g0367500 (Os06g0367500) mRNA, partial cds Length = 1070 Score = 67.9 bits (34), Expect = 7e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||| ||||| |||||||| ||| | ||| |||||||||||||||||||||||||| Sbjct: 225 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 284 Query: 345 atactc 350 |||||| Sbjct: 285 atactc 290 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Plus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 ||||||||||||||| ||||| |||| || || ||||| |||||| | |||||||| || Sbjct: 90 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 149 Query: 228 cggctccagcg 238 || |||||||| Sbjct: 150 cgcctccagcg 160
>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full insert sequence Length = 1070 Score = 67.9 bits (34), Expect = 7e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||| ||||| |||||||| ||| | ||| |||||||||||||||||||||||||| Sbjct: 225 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 284 Query: 345 atactc 350 |||||| Sbjct: 285 atactc 290 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Plus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 ||||||||||||||| ||||| |||| || || ||||| |||||| | |||||||| || Sbjct: 90 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 149 Query: 228 cggctccagcg 238 || |||||||| Sbjct: 150 cgcctccagcg 160
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 56.0 bits (28), Expect = 3e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||| ||||| |||||||| ||| | ||| |||||||||||||||||||||||||| Sbjct: 15226806 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 15226747 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 ||||||||||||||| ||||| |||| || || ||||| |||||| | |||||||| || Sbjct: 15226941 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 15226882 Query: 228 cggctccagcg 238 || |||||||| Sbjct: 15226881 cgcctccagcg 15226871 Score = 44.1 bits (22), Expect = 0.95 Identities = 25/26 (96%) Strand = Plus / Minus Query: 61 atgatccagctgatgttcacgctgct 86 ||||||||||||||||||||| |||| Sbjct: 15227048 atgatccagctgatgttcacggtgct 15227023
>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0015G09 Length = 140893 Score = 56.0 bits (28), Expect = 3e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 285 gctcacgcccacagaccaggtgctcgccagccgacacctcctcgaggcctcgctcatggg 344 |||||| ||||| |||||||| ||| | ||| |||||||||||||||||||||||||| Sbjct: 101320 gctcacccccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatggg 101261 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 ||||||||||||||| ||||| |||| || || ||||| |||||| | |||||||| || Sbjct: 101455 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 101396 Query: 228 cggctccagcg 238 || |||||||| Sbjct: 101395 cgcctccagcg 101385 Score = 44.1 bits (22), Expect = 0.95 Identities = 25/26 (96%) Strand = Plus / Minus Query: 61 atgatccagctgatgttcacgctgct 86 ||||||||||||||||||||| |||| Sbjct: 101562 atgatccagctgatgttcacggtgct 101537
>gb|DQ245965.1| Zea mays clone 93628 mRNA sequence Length = 845 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 316 cgacacctcctcgaggcctcgctcatgggatactc 350 ||||||||||||||||| || |||||||||||||| Sbjct: 354 cgacacctcctcgaggcgtcactcatgggatactc 388 Score = 44.1 bits (22), Expect = 0.95 Identities = 52/62 (83%) Strand = Plus / Plus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 |||||| ||||||||||| || |||| || || ||||||||||| |||| |||||||| Sbjct: 188 caagcggggccgcgggcctgtcatggtgcgcaccatcgcggccaccgtgcttgtcgtgct 247 Query: 228 cg 229 || Sbjct: 248 cg 249
>gb|AY105569.1| Zea mays PCO107462 mRNA sequence Length = 1024 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 316 cgacacctcctcgaggcctcgctcatgggatactc 350 ||||||||||||||||| || |||||||||||||| Sbjct: 463 cgacacctcctcgaggcgtcactcatgggatactc 497 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 168 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 227 |||||| |||||||||||||| |||| || || ||||||||||| |||| |||||||| Sbjct: 297 caagcggggccgcgggcccgtcatggtgcgcaccatcgcggccaccgtgcttgtcgtgct 356 Query: 228 cg 229 || Sbjct: 357 cg 358
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 48.1 bits (24), Expect = 0.061 Identities = 27/28 (96%) Strand = Plus / Plus Query: 79 acgctgctggccgccgaggcagcgctgg 106 ||||||||||||||||||| |||||||| Sbjct: 719263 acgctgctggccgccgaggaagcgctgg 719290
>gb|AC118802.7| Rattus norvegicus 13 BAC CH230-72B9 (Children's Hospital Oakland Research Institute) complete sequence Length = 239935 Score = 44.1 bits (22), Expect = 0.95 Identities = 22/22 (100%) Strand = Plus / Plus Query: 570 aaaaactgctgaaattaataat 591 |||||||||||||||||||||| Sbjct: 45066 aaaaactgctgaaattaataat 45087
>emb|CR318592.7| Zebrafish DNA sequence from clone CH211-51F17 in linkage group 19, complete sequence Length = 124310 Score = 44.1 bits (22), Expect = 0.95 Identities = 28/30 (93%) Strand = Plus / Minus Query: 759 tactgtaaatttttgtcatataatgttatt 788 |||||||||||| |||||| |||||||||| Sbjct: 77611 tactgtaaatttctgtcatttaatgttatt 77582
>emb|CR855240.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0103C08-B0602B01, complete sequence Length = 150079 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 86389 ccgcgccaagccgccaaccac 86409
>dbj|AK237537.1| Sus scrofa mRNA, clone:SPL010058D09, expressed in spleen Length = 1336 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 496 cgccgaggcagcgctggtgct 516
>ref|NM_001069465.1| Oryza sativa (japonica cultivar-group) Os09g0344400 (Os09g0344400) mRNA, complete cds Length = 1530 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 637 cgccgaggcagcgctggtgct 617
>ref|NM_001060074.1| Oryza sativa (japonica cultivar-group) Os04g0559200 (Os04g0559200) mRNA, complete cds Length = 4069 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 184 ccgcgccaagccgccaaccac 164
>ref|XM_635698.1| Dictyostelium discoideum AX4 RNA-directed RNA polymerase (rrpC) mRNA, complete cds Length = 6858 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 569 taaaaactgctgaaattaataattt 593 |||||||| |||||||||||||||| Sbjct: 5495 taaaaactactgaaattaataattt 5519
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 3.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 78 cacgctgctggccgccgaggcagcgctggtgct 110 ||||||||||| |||||||| ||||||||||| Sbjct: 1367498 cacgctgctggtcgccgaggaggcgctggtgct 1367530
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 10681587 cgccgaggcagcgctggtgct 10681567
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 ctggtgctcgtgctgctcttccgca 127 |||||||||||| |||||||||||| Sbjct: 27637448 ctggtgctcgtggtgctcttccgca 27637472 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 27995058 ccgcgccaagccgccaaccac 27995078
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 2283 ccgcgccaagccgccaaccac 2303
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 157911 ccgcgccaagccgccaaccac 157931
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 ctggtgctcgtgctgctcttccgca 127 |||||||||||| |||||||||||| Sbjct: 68077 ctggtgctcgtggtgctcttccgca 68101
>emb|AL844157.5| Mouse DNA sequence from clone RP24-313C24 on chromosome 4 Contains a novel peudogene and a CpG island, complete sequence Length = 156075 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 gactctgaggaaattcaaaga 492 ||||||||||||||||||||| Sbjct: 79160 gactctgaggaaattcaaaga 79140
>emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 in linkage group 19, complete sequence Length = 178832 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 939 tttttgatatttcggaaataatatt 963 |||||||||||| |||||||||||| Sbjct: 40713 tttttgatattttggaaataatatt 40689
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0057I13 Length = 156330 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 133899 cgccgaggcagcgctggtgct 133879
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 18205 cgccgaggcagcgctggtgct 18185
>dbj|AK103540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C04, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cgccgaggcagcgctggtgct 110 ||||||||||||||||||||| Sbjct: 638 cgccgaggcagcgctggtgct 618
>dbj|AK066088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051G09, full insert sequence Length = 4070 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 ccgcgccaagccgccaaccac 34 ||||||||||||||||||||| Sbjct: 185 ccgcgccaagccgccaaccac 165
>emb|AL845356.8| Mouse DNA sequence from clone RP23-29O14 on chromosome 2, complete sequence Length = 141599 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 gactctgaggaaattcaaaga 492 ||||||||||||||||||||| Sbjct: 60831 gactctgaggaaattcaaaga 60811
>gb|AF117611.1|AF117611 Dictyostelium discoideum DosA protein (dosA) gene, complete cds Length = 4978 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 569 taaaaactgctgaaattaataattt 593 |||||||| |||||||||||||||| Sbjct: 2410 taaaaactactgaaattaataattt 2434 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,919,128 Number of extensions: 11179903 Number of successful extensions: 261894 Number of sequences better than 10.0: 32 Number of HSP's gapped: 261882 Number of HSP's successfully gapped: 47 Length of query: 997 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 974 Effective length of database: 18,503,978,556 Effective search space: 18022875113544 Effective search space used: 18022875113544 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)