Clone Information

BLAST Search Result

Clone Name	FLbaf71c24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK103722:Os03g0306800	162	3e-40
2	AK102013:Os01g0303000	124	4e-29
3	AK066266:Os01g0303000	124	4e-29
4	AK058929:Os01g0303000	124	4e-29
5	AK067755:Os03g0129300	44	1e-04
6	AK059014:Os03g0129300	44	1e-04
7	AK099736:Os02g0610800	38	0.007
8	AK073586:Os03g0767700	30	1.9
9	AK119414:Os09g0539200	29	2.5
10	AK109254:Os09g0463800	28	4.3
11	AK111994:Os05g0593800	28	4.4
12	AK111911:Os05g0593800	28	4.4
13	AK105749:Os03g0605300	28	4.4
14	AK058393:Os03g0250200	28	5.7
15	Os08g0525800:Os08g0525800	28	7.4
16	AK110767:Os04g0669600	28	7.4
17	AK101730:Os01g0829800	28	7.4
18	AK098903:Os09g0438700	28	7.4
19	AK061837:Os09g0438700	28	7.4
20	AK058753:Os01g0829800	28	7.4
21	AK061319:	28	7.5
22	AK108210:Os07g0615500	28	7.5
23	Os08g0364900:Os08g0364900	27	9.7
24	AK110186:	27	9.7
25	AK073137:Os10g0466000	27	9.7
26	AK072879:Os03g0283800	27	9.7
27	AK058477:Os08g0434300	27	9.7
28	AK061279:Os04g0401100	27	9.7

>AK103722:Os03g0306800 |
          Length = 131
 Score =  162 bits (409), Expect = 3e-40
 Identities = 83/106 (78%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +3

Query: 120 TLPSRPSVVSFAARAM-RAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAGDPVGGE 296
           TLP R +VVSFA R   RA GR  V VA    TPPELAQKV+ESIKQAEETCAGDP GGE
Sbjct: 26  TLPVRRNVVSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGE 85

Query: 297 CVAAWDEVEELSAAASHARDRKKEHSDPLEEFCEDNPETDECRTYD 434
           C AAWDEVEELSAAASHARDRKK+ SDPLEE+C+DNPETDECRTY+
Sbjct: 86  CAAAWDEVEELSAAASHARDRKKD-SDPLEEYCKDNPETDECRTYE 130

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>AK102013:Os01g0303000 |
          Length = 124

 Score =  124 bits (312), Expect = 4e-29
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 198 AGSPSTPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHARDRKKEHSD 377
           A  P+TPP+++ K++ESI +A+E CA D   GEC AAWDEVEELSAAASHARD+ KE SD
Sbjct: 45  ASGPATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSD 104

Query: 378 PLEEFCEDNPETDECRTYDS 437
           PLE +C+DNPETDECRTYD+
Sbjct: 105 PLEAYCKDNPETDECRTYDN 124

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>AK066266:Os01g0303000 |
          Length = 124

 Score =  124 bits (312), Expect = 4e-29
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 198 AGSPSTPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHARDRKKEHSD 377
           A  P+TPP+++ K++ESI +A+E CA D   GEC AAWDEVEELSAAASHARD+ KE SD
Sbjct: 45  ASGPATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSD 104

Query: 378 PLEEFCEDNPETDECRTYDS 437
           PLE +C+DNPETDECRTYD+
Sbjct: 105 PLEAYCKDNPETDECRTYDN 124

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>AK058929:Os01g0303000 |
          Length = 124

 Score =  124 bits (312), Expect = 4e-29
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 198 AGSPSTPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHARDRKKEHSD 377
           A  P+TPP+++ K++ESI +A+E CA D   GEC AAWDEVEELSAAASHARD+ KE SD
Sbjct: 45  ASGPATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSD 104

Query: 378 PLEEFCEDNPETDECRTYDS 437
           PLE +C+DNPETDECRTYD+
Sbjct: 105 PLEAYCKDNPETDECRTYDN 124

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>AK067755:Os03g0129300 |
          Length = 444

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = +3

Query: 375 DPLEEFCEDNPETDECRTYDS 437
           DPLE+FC+DNPETDEC+ Y++
Sbjct: 424 DPLEDFCKDNPETDECKVYEN 444

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>AK059014:Os03g0129300 |
          Length = 218

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = +3

Query: 375 DPLEEFCEDNPETDECRTYDS 437
           DPLE+FC+DNPETDEC+ Y++
Sbjct: 198 DPLEDFCKDNPETDECKVYEN 218

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>AK099736:Os02g0610800 |
          Length = 392

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = +3

Query: 129 SRPSVVSFAARAM--RAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAGDPVGGECV 302
           S+PS  +F+ARA+   AH  R V  A +PS+     + V+    ++    A D       
Sbjct: 22  SKPSCATFSARALPPAAHCCRTVVAAAAPSSRTCRCRSVSS---ESSTAAAADTA----- 73

Query: 303 AAWDEVEELSAAASHARDRKKEHSDPLEEFCEDNPETD 416
              D+ EE++ +     D ++E  DPL E C  +PE D
Sbjct: 74  ---DDEEEVTKS-----DSEEEEMDPLAEVCYLDPEAD 103

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>AK073586:Os03g0767700 |
          Length = 296

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 156 ARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSA 335
           ARA+  H  RL    G  STPP    +V ++++          + G+C  A   + +++ 
Sbjct: 222 ARALMYHSERLAIAFGLVSTPPGTPLRVIKNLR----------ICGDCHNAVKLIAKVTG 271

Query: 336 AASHARDRKKEH 371
                RD K+ H
Sbjct: 272 REIVVRDNKRFH 283

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>AK119414:Os09g0539200 |
          Length = 446

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +3

Query: 120 TLPSRPSVVSFAARAMRAHGRRLVAVAGS---PSTPPELAQKVTESIK 254
           TL  + +VVS+  R++   G+R +  +G+   P +PPE+  K+ ++ K
Sbjct: 28  TLTKKGTVVSYDERSLMIDGKRDLFFSGAIHYPRSPPEMWDKLVKTAK 75

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>AK109254:Os09g0463800 |
          Length = 156

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 132 RPSVVSFAARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAGDPVGG 293
           RP +     R    HGRR  AVA  PS PP + +   E  ++A    AG P  G
Sbjct: 44  RPPLRQIQRRRRAPHGRRRPAVAAVPS-PPRIRR---EGRRRAPWPPAGTPTSG 93

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>AK111994:Os05g0593800 |
          Length = 473

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 289 PTGSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLGRDGS 122
           P G     S   +  S TF   S G    PA ++SR P     ++ + TT    G+
Sbjct: 364 PIGHEQSTSKDAVFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRSRTTDASPGA 419

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>AK111911:Os05g0593800 |
          Length = 473

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 289 PTGSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLGRDGS 122
           P G     S   +  S TF   S G    PA ++SR P     ++ + TT    G+
Sbjct: 364 PIGHEQSTSKDAVFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRSRTTDASPGA 419

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>AK105749:Os03g0605300 |
          Length = 765

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
 Frame = -1

Query: 283 GSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARA---------ANDTTLGR 131
           G   H SS     +V+  +  G   G   TA    P AR+A           ++D   G 
Sbjct: 205 GHGTHTSSTAAGAAVSGASLLGFASG---TARGMAPRARVAVYKVCWLGGCFSSDILAGM 261

Query: 130 DGSVADGCATL---LGAG 86
           D +VADGC  L   LG G
Sbjct: 262 DAAVADGCGVLSLSLGGG 279

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>AK058393:Os03g0250200 |
          Length = 380

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
 Frame = +3

Query: 105 AQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTP------PELAQKVTESIKQAEE 266
           +Q + T+PS P +   A+          +  A +PSTP      P+  +    S++ A  
Sbjct: 246 SQDAKTVPSSPKIKRQASTKAAPVASTKLTGAAAPSTPKSDADAPKKNEAAPASLQVATP 305

Query: 267 TCAGDPVGGECVAAWDEVEELSAAASHARD---RKKEHSDPLE-EFCEDNPETDECR 425
               D    E  A   E EE    A    D      E  DP+  E  E+ P  +  R
Sbjct: 306 ATKADVPASEPSAPLPEAEEADKMAIDEADDAVEGTEEGDPVPGETVEERPMEETIR 362

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>Os08g0525800:Os08g0525800 |
          Length = 482

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 186 LVAVAGSPSTPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHA 350
           L    G  +    +A  V  + +Q   TCA    GGEC    ++ + L+A AS+A
Sbjct: 388 LAGGGGEAANETAVAAAVEYACRQRSGTCAAIEAGGEC----NQPDTLAAHASYA 438

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>AK110767:Os04g0669600 |
          Length = 235

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
 Frame = +3

Query: 159 RAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAGDPV---GGECVAAWDEVEEL 329
           R +  HG             P  A     S++ +  T     +   GGE + AW  + E+
Sbjct: 11  RVLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEV 70

Query: 330 SAAASHARDRKK 365
              A  ARD K+
Sbjct: 71  PITARTARDEKE 82

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>AK101730:Os01g0829800 |
          Length = 396

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 99  SVAQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAG 278
           S  +PS T  +  +      R   A    + A AG+ S    +A      ++ +    AG
Sbjct: 261 SKTRPSVTFTNEETE-ELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALAG 319

Query: 279 DPVGGECVAAWDEVEELSAAASHAR 353
           DP   EC     E+ EL   AS  +
Sbjct: 320 DPDVYECTFVQSELTELLFFASRVK 344

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>AK098903:Os09g0438700 |
          Length = 245

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
 Frame = +3

Query: 96  RSVAQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTP-----PELAQKVTESIKQA 260
           R    P+A L + PSV + A+R  R + R LV  A +  +P       L  +V   IK +
Sbjct: 11  RVSVSPAAALVAMPSVAAAASRGRRGY-RGLVVRAATVVSPKYTSIKPLGDRVLVKIKTS 69

Query: 261 EETCAG----------DPVGGECVA 305
           ++   G           P GG+ VA
Sbjct: 70  DDKTVGGILLPTSVQSKPQGGQVVA 94

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>AK061837:Os09g0438700 |
          Length = 245

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
 Frame = +3

Query: 96  RSVAQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTP-----PELAQKVTESIKQA 260
           R    P+A L + PSV + A+R  R + R LV  A +  +P       L  +V   IK +
Sbjct: 11  RVSVSPAAALVAMPSVAAAASRGRRGY-RGLVVRAATVVSPKYTSIKPLGDRVLVKIKTS 69

Query: 261 EETCAG----------DPVGGECVA 305
           ++   G           P GG+ VA
Sbjct: 70  DDKTVGGILLPTSVQSKPQGGQVVA 94

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>AK058753:Os01g0829800 |
          Length = 406

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 99  SVAQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAG 278
           S  +PS T  +  +      R   A    + A AG+ S    +A      ++ +    AG
Sbjct: 271 SKTRPSVTFTNEETE-ELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALAG 329

Query: 279 DPVGGECVAAWDEVEELSAAASHAR 353
           DP   EC     E+ EL   AS  +
Sbjct: 330 DPDVYECTFVQSELTELLFFASRVK 354

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>AK061319: |
          Length = 364

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 286 TGSPAHVSSACLM--LSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLGRDGSVAD 113
           +G     S++C    + +T  AS    D   ATA +++P A    A N +     G V  
Sbjct: 243 SGVTGSCSTSCTKKAIKITSVASVTATDAGFATAITKQPVAVAVAAGNPSWKQYTGGVVS 302

Query: 112 GCAT 101
            C+T
Sbjct: 303 SCST 306

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>AK108210:Os07g0615500 |
          Length = 197

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 292 PPTGSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLGR 131
           PP  +PA     C +      A++ GV+   A     RP    A AA D  +GR
Sbjct: 9   PPAAAPAS-RRRCFVFVERAAAAAVGVNAAIAAVDDHRPVPAAAAAAMDDVVGR 61

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>Os08g0364900:Os08g0364900 |
          Length = 352

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
 Frame = +3

Query: 153 AARAMRAHGRRLVAVAGSPSTPPEL-----AQKVTESIKQAEETCAGDPVGGECVAAWDE 317
           AARA      R + VA  P     +          E ++QA E       G E  A W  
Sbjct: 283 AARATERSAARFLLVAARPHGEAVVKDGPFVMNTREEVEQAREDYRNRRNGFEMAAGWSS 342

Query: 318 VEELSAAASH 347
               +AAA+H
Sbjct: 343 DHVATAAAAH 352

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>AK110186: |
          Length = 1213

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 111 PSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAG 278
           PS +LP  P      + +  A+G         P TPP ++Q+++ S+ Q     AG
Sbjct: 162 PSPSLPLSPECNVSPSPSFAAYGY--------PDTPPRVSQRLSSSLSQDRPGTAG 209

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>AK073137:Os10g0466000 |
          Length = 557

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +3

Query: 210 STPPELAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHARDRKKEHSDPLEE 389
           S PP +AQ+     K  +  C G+    +CV    + +++ A A          SD L+ 
Sbjct: 65  SAPPVMAQQ-----KGGKPDCGGEEDDDDCVVLDGDPDDVVAVAGEKGSEGDGSSDELQI 119

Query: 390 FCEDNPETDECRTY 431
             E  P    CR +
Sbjct: 120 VAEKGPVA--CRDF 131

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>AK072879:Os03g0283800 |
          Length = 883

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 222 ELAQKVTESIKQA-EETCAGDPVGGECVAAWDEVEELSAAASHARDRKKEHSDPLEEFCE 398
           E A  +T SI  + E++ AGD  GGE +   + +E  +       + ++E  +  E+   
Sbjct: 48  ESADDITTSISPSKEDSAAGDVNGGEHLDGAENLENSNRGGIKCNNEEEEGEEDAEK--S 105

Query: 399 DNPETDE 419
           D PE  +
Sbjct: 106 DTPENSK 112

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>AK058477:Os08g0434300 |
          Length = 356

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 22/85 (25%), Positives = 31/85 (36%)
 Frame = +3

Query: 99  SVAQPSATLPSRPSVVSFAARAMRAHGRRLVAVAGSPSTPPELAQKVTESIKQAEETCAG 278
           S   PS T     +      R   A    + A AG+ S    +A      ++ +    AG
Sbjct: 220 SKTMPSVTFTDEETE-QLTKRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALAG 278

Query: 279 DPVGGECVAAWDEVEELSAAASHAR 353
           DP   EC     E+ EL   AS  +
Sbjct: 279 DPDVYECTFVQSELTELPFFASRVK 303

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>AK061279:Os04g0401100 |
          Length = 216

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -1

Query: 286 TGSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLGRDGSVADGC 107
           T +P+H+       S    A  G      ATAT RRPC R  R  +  T  R  + A  C
Sbjct: 126 TATPSHLRRRRRQRSQRAAARLGR---RRATATRRRPCRR-TRRCSSATRARSTAPAPSC 181

Query: 106 A 104
           +
Sbjct: 182 S 182


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 14,233,584
Number of extensions: 278334
Number of successful extensions: 1179
Number of sequences better than 10.0: 28
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 28
Length of query: 226
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,515,878
Effective search space: 1485548262
Effective search space used: 1485548262
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result