ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf71c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9ZRZ8:RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 - Arabi... 38 0.040
2P12860:G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, ch... 37 0.089
3P12859:G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chlo... 36 0.15
4P25857:G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, ch... 36 0.15
5Q9H4A3:WNK1_HUMAN Serine/threonine-protein kinase WNK1 - Homo sa... 32 1.7
6Q8WVV5:BT2A2_HUMAN Butyrophilin subfamily 2 member A2 precursor ... 31 3.7
7Q9D2D7:ZN687_MOUSE Zinc finger protein 687 - Mus musculus (Mouse) 31 4.9

>Q9ZRZ8:RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 789
 Score = 37.7 bits (86), Expect = 0.040
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +3

Query: 225 LAQKVTESIKQAEETCAGDPVGGECVAAWDEVEELSAAASHARDR-------KKEHSDPL 383
           + +K  + + QAE+  AG+P GGE V+A D  E+L       R+R       K+   +  
Sbjct: 602 MTEKEKKLVAQAEKDSAGNPAGGELVSA-DRAEDLKMKEKRKREREKNLPRKKRRKLEAA 660

Query: 384 EEFCEDNPETDE 419
            E  EDN   +E
Sbjct: 661 REMLEDNEGEEE 672



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>P12860:G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Spinacia oleracea (Spinach)
          Length = 451

 Score = 36.6 bits (83), Expect = 0.089
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 375 DPLEEFCEDNPETDECRTYD 434
           DPLE+FC+DNP  +EC+ Y+
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451



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>P12859:G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Pisum sativum (Garden pea)
          Length = 451

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 375 DPLEEFCEDNPETDECRTYD 434
           DPLE+FCE NP  +EC+ Y+
Sbjct: 432 DPLEDFCETNPADEECKVYE 451



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>P25857:G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 447

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 375 DPLEEFCEDNPETDECRTYD 434
           DPLE+FC+ NP  +EC+ YD
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447



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>Q9H4A3:WNK1_HUMAN Serine/threonine-protein kinase WNK1 - Homo sapiens (Human)|
          Length = 2382

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 292  PPTGSPAHVSSACLMLSVTFCASSGGVDGEPATATSRRPCARIARAANDTTLG 134
            P + S   VSS  L  SVT  A+S    G  AT   + P     +AA  TT+G
Sbjct: 1434 PTSTSEIVVSSTALYPSVTVSATSASAGGSTATPGPKPPAVVSQQAAGSTTVG 1486



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>Q8WVV5:BT2A2_HUMAN Butyrophilin subfamily 2 member A2 precursor - Homo sapiens (Human)|
          Length = 523

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 348 ARDRKKEHSDPLEEFCEDNPETDECRTYDS*PCELVPASAIAGRHHER*LRA*LPWHIGI 527
           + DR+     P  +   DNPE      +DS PC L   S  +G+H+         W + +
Sbjct: 343 SEDRRSVRRGPYRQRVPDNPER-----FDSQPCVLGWESFASGKHY---------WEVEV 388

Query: 528 LGV*VWFVAL 557
             V VW V +
Sbjct: 389 ENVMVWTVGV 398



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>Q9D2D7:ZN687_MOUSE Zinc finger protein 687 - Mus musculus (Mouse)|
          Length = 1237

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +3

Query: 189  VAVAGSPSTPPELAQKVT--ESIKQAE------ETCAGDPVGGECVAAWDEVEELSAAAS 344
            V+V   PS P   AQK T  E +K         E   G   GG  +    E EEL+ + +
Sbjct: 855  VSVFKCPSCPLLFAQKRTMLEHLKNTHQSGRVGEEAVGKGAGGALLTPKTEPEELAVSQA 914

Query: 345  HARDRKKEHSDPLEEFCEDNPE 410
             A    +E S   EE    +PE
Sbjct: 915  EAAPATEESSSSSEEELPSSPE 936


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 82,953,789
Number of extensions: 1504499
Number of successful extensions: 4453
Number of sequences better than 10.0: 7
Number of HSP's gapped: 4450
Number of HSP's successfully gapped: 7
Length of query: 226
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 117
Effective length of database: 70,788,284
Effective search space: 8282229228
Effective search space used: 8282229228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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