>Q02353:NDST1_RAT Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 -|
           Rattus norvegicus (Rat)
          Length = 882
 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 459 SCFRRLGDQSGSILQALQTSASYFLLYIFEIIYTYLGACFVGGWNRG 599
           +C RRL        + L   A  FLL++F +   ++ A ++ GWNRG
Sbjct: 5   ACLRRL-------CRHLSPQAVLFLLFVFCLFSVFVSAYYLYGWNRG 44

>Q3UHN9:NDST1_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 -|
           Mus musculus (Mouse)
          Length = 882

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 459 SCFRRLGDQSGSILQALQTSASYFLLYIFEIIYTYLGACFVGGWNRG 599
           +C RRL        + L   A  FLL++F +   ++ A ++ GWNRG
Sbjct: 5   ACLRRL-------CRHLSPQAVLFLLFVFCLFSVFVSAYYLYGWNRG 44

>Q9M0S4:AGP10_ARATH Classical arabinogalactan protein 10 precursor - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 127

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 13  PPRSAA-TPRV-HTPNPTLSSLRTACPHAPSASS 108
           PPR+AA TP +  TP PT S+  TA P +P A S
Sbjct: 39  PPRTAAPTPSITPTPTPTPSATPTAAPVSPPAGS 72

>Q02388:CO7A1_HUMAN Collagen alpha-1(VII) chain precursor - Homo sapiens (Human)|
          Length = 2944

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 479  PEPTETRGKKNEGPIPNLGGGTGEKREEAC*NPPGP 372
            P P   +G+K E   P +GG  G    +    PPGP
Sbjct: 2691 PGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGP 2726

>Q9JI03:CO5A1_RAT Collagen alpha-1(V) chain precursor - Rattus norvegicus (Rat)|
          Length = 1840

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 464 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 363
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841

>O88207:CO5A1_MOUSE Collagen alpha-1(V) chain precursor - Mus musculus (Mouse)|
          Length = 1838

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 464 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 363
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839

>P20908:CO5A1_HUMAN Collagen alpha-1(V) chain precursor - Homo sapiens (Human)|
          Length = 1838

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 464 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 363
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 839

>Q60467:CO5A1_CRILO Collagen alpha-1(V) chain precursor - Cricetulus longicaudatus|
           (Long-tailed hamster) (Chinese hamster)
          Length = 1840

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 464 TRGKKNEGPIPNLGGGTGEKREEAC*NPPGPRPE 363
           T+G+K E   P   G  G K +     PPGPR E
Sbjct: 808 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGE 841


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 91,934,608
Number of extensions: 1855227
Number of successful extensions: 5094
Number of sequences better than 10.0: 8
Number of HSP's gapped: 5087
Number of HSP's successfully gapped: 8
Length of query: 215
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 106
Effective length of database: 70,788,284
Effective search space: 7503558104
Effective search space used: 7503558104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)