ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf130p19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q42533:BCCP_ARATH Biotin carboxyl carrier protein of acetyl-CoA ... 39 0.15
2Q32N93:INCEB_XENLA Inner centromere protein B - Xenopus laevis (... 35 2.2
3Q24255:BARH1_DROME Homeobox protein B-H1 - Drosophila melanogast... 35 2.2
4Q9EQJ4:ZN384_RAT Zinc finger protein 384 - Rattus norvegicus (Rat) 34 3.7
5Q4R3F0:LRRC6_MACFA Leucine-rich repeat-containing protein 6 - Ma... 34 3.7
6Q86X45:LRRC6_HUMAN Leucine-rich repeat-containing protein 6 - Ho... 34 3.7
7Q9SFU0:SC24A_ARATH Protein transport protein Sec24-like At3g0710... 33 6.3
8Q9C035:TRIM5_HUMAN Tripartite motif-containing protein 5 - Homo ... 33 8.3
9O21241:NDUS1_RECAM NADH-ubiquinone oxidoreductase 75 kDa subunit... 33 8.3
10Q13164:MK07_HUMAN Mitogen-activated protein kinase 7 - Homo sapi... 33 8.3

>Q42533:BCCP_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase,|
            chloroplast precursor - Arabidopsis thaliana (Mouse-ear
            cress)
          Length = 280
 Score = 38.5 bits (88), Expect = 0.15
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 1708 PNTGMYYIPMQRPNAP---QQYTIPAGAVAPMAAPTIVDSAPKPTVPIPQQYMKPELQQP 1878
            P     Y+ MQ+PN P   QQ   PA   A   AP+   S P P+ P P +   P ++ P
Sbjct: 150  PQAPASYVMMQQPNQPSYAQQMAPPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSP 209



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>Q32N93:INCEB_XENLA Inner centromere protein B - Xenopus laevis (African clawed frog)|
          Length = 892

 Score = 34.7 bits (78), Expect = 2.2
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +1

Query: 670 ASVNCLLGLED---DNASQHSRSGVQNSGPAEDQRASQQKLXXXXXXXXRHQHDVQSVPD 840
           AS+ C   +E    ++ SQ  +  VQ      ++R+++QKL          + DVQ +P+
Sbjct: 130 ASIMCPPAVEQALPESPSQLCQKSVQVKISEHERRSAEQKLRESEIEDSEMKTDVQPIPE 189

Query: 841 SPMLDKNSSFGSTSSAPSLSNLPPIRVRPEDRQPLAPPVSV 963
               D  S   + +  P + ++P + V PE++   A  + +
Sbjct: 190 ITK-DHISEIMNAAGPPPIPDIPAVPVTPENKSRAAGKLKI 229



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>Q24255:BARH1_DROME Homeobox protein B-H1 - Drosophila melanogaster (Fruit fly)|
          Length = 544

 Score = 34.7 bits (78), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 2054 HRSSTLRQEHHQHHCHLSISSP 2119
            H  STL+Q+HHQHH H  +  P
Sbjct: 24   HHLSTLQQQHHQHHLHYGLQPP 45



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>Q9EQJ4:ZN384_RAT Zinc finger protein 384 - Rattus norvegicus (Rat)|
          Length = 579

 Score = 33.9 bits (76), Expect = 3.7
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = +1

Query: 2041 ADPRAQVFYSQAGA------PPASLPPQYQQPMGAPDASGQADMNQN 2163
            A  +AQ   SQA        PP   PP +Q P  AP   G  D NQN
Sbjct: 495  AQAQAQAQASQASQQQQQQQPPPPQPPHFQSPGAAPQGGGGGDSNQN 541



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>Q4R3F0:LRRC6_MACFA Leucine-rich repeat-containing protein 6 - Macaca fascicularis (Crab|
            eating macaque) (Cynomolgus monkey)
          Length = 466

 Score = 33.9 bits (76), Expect = 3.7
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 2514 DKQLEL*SNTSFTGLLPPQLNATSANGLSRTKRKLPQTQQH---KNQHSTILILFWTEPL 2344
            DK  +  SN  F G     +NAT ++  S+   + P T++H   K  +S   + FW +P 
Sbjct: 195  DKNEDKRSNAGFDGRWYTDINATLSSLESKDHLQAPDTEEHNTKKLDNSEDDLEFWNKPC 254

Query: 2343 ITTPDECL 2320
            + TP+  L
Sbjct: 255  LFTPESRL 262



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>Q86X45:LRRC6_HUMAN Leucine-rich repeat-containing protein 6 - Homo sapiens (Human)|
          Length = 466

 Score = 33.9 bits (76), Expect = 3.7
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 2514 DKQLEL*SNTSFTGLLPPQLNATSANGLSRTKRKLPQTQQH---KNQHSTILILFWTEPL 2344
            DK  +  SN  F G     +NAT ++  S+   + P T++H   K  +S   + FW +P 
Sbjct: 195  DKNEDKRSNAGFDGRWYTDINATLSSLESKDHLQAPDTEEHNTKKLDNSEDDLEFWNKPC 254

Query: 2343 ITTPDECL 2320
            + TP+  L
Sbjct: 255  LFTPESRL 262



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>Q9SFU0:SC24A_ARATH Protein transport protein Sec24-like At3g07100 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 1038

 Score = 33.1 bits (74), Expect = 6.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 2017 NYGYPEYAADPRAQVFYSQAGAPPASLPPQYQQPMGAPDASG 2142
            N GYP + A P +  F   A APP  +PPQ   P    +A G
Sbjct: 5    NQGYPNFPARPASSPF---ASAPPPGIPPQSGGPPTGSEAVG 43



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>Q9C035:TRIM5_HUMAN Tripartite motif-containing protein 5 - Homo sapiens (Human)|
          Length = 493

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 1145 GVGCSSHQSRRFHLPSTPTTGPCSTMIC 1228
            GV CS+ Q   FH PS P   P S +IC
Sbjct: 407  GVKCSAFQDSSFHTPSVPFIVPLSVIIC 434



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>O21241:NDUS1_RECAM NADH-ubiquinone oxidoreductase 75 kDa subunit - Reclinomonas|
            americana
          Length = 691

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 2570 DSEVFTELFRQLYIYSKIKTSNWNCNPTLHSQA 2472
            D     EL + L+ Y++IKTSNWN    LH+ A
Sbjct: 466  DGTSIIELVKTLFKYTQIKTSNWNGFNILHTSA 498



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>Q13164:MK07_HUMAN Mitogen-activated protein kinase 7 - Homo sapiens (Human)|
          Length = 815

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 1735 MQRPNAPQQYTIPAGAVAPMAAPTIVDSAPKPTVPIPQQYMKPELQQP 1878
            M RP AP   ++PA A AP   PT V    +PT P P    +P   QP
Sbjct: 574  MARPAAPALTSVPAPAPAPTPTPTPV----QPTSPPPGPLAQPTGPQP 617


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 375,897,952
Number of extensions: 8061926
Number of successful extensions: 26680
Number of sequences better than 10.0: 10
Number of HSP's gapped: 26543
Number of HSP's successfully gapped: 10
Length of query: 910
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 788
Effective length of database: 67,222,449
Effective search space: 52971289812
Effective search space used: 52971289812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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