ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf126d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK110487: 31 0.53
2AK102183:Os12g0612700 30 1.2
3AK122185:Os04g0677000 28 3.5
4AK100020:Os09g0268600 28 4.5
5Os11g0689400:Os11g0689400 27 7.7
6AK121027:Os07g0655500 27 7.7

>AK110487: |
          Length = 523
 Score = 30.8 bits (68), Expect = 0.53
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = -3

Query: 439 TGSSMYCTNTLTHTTRHMDQSIVHFTSRS*QEKRSHTPSRAADKTHHDSMRRARQQHRLG 260
           T S  +C          M       +S S    +    S       H S ++ +QQH  G
Sbjct: 154 TSSETFCNVLRVGIEAAMGSCSSSNSSSSSSSHQQPAGSPTVSPARHRSFQQQQQQHP-G 212

Query: 259 GYMVLHPASRARASCLAGQRQTMQRMMAMITTS 161
           G   LHPA+    S LA   Q +  + A+++T+
Sbjct: 213 GLQALHPAAATLVSVLANP-QVLNLIDALVSTT 244



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>AK102183:Os12g0612700 |
          Length = 855

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 334 HTPSRAADKTHHDSMRRARQQHRLGGYMVLHPASRAR--ASCLAGQRQTMQRMMAMITTS 161
           H PS A   T  +S+  + Q H+     VLHP   A   A  LA   +T+   M+  T +
Sbjct: 134 HNPSAATTDTSCESVVTSGQHHQQQNPAVLHPQRDANNPAGLLAIAEETLAEFMSKATGT 193

Query: 160 A 158
           A
Sbjct: 194 A 194



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>AK122185:Os04g0677000 |
          Length = 368

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 436 GSSMYCTNTLTHTTRHMDQSIVHFTSR 356
           G+  YC +T+ HT RH+ + I+ F  +
Sbjct: 202 GAGTYCMDTVKHTWRHVGEWILPFNGK 228



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>AK100020:Os09g0268600 |
          Length = 440

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 343 KRSHTPSRAADKTHHDSMRRARQQHRLGGYMVLHPASRARASCLAGQR 200
           KRSH P   A ++H  S +     H+   Y  ++    +R   L  +R
Sbjct: 328 KRSHEPENQAQRSHEPSSQDHINNHQPSSYQPINEGGTSRGRKLDSRR 375



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>Os11g0689400:Os11g0689400 |
          Length = 2841

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 397  TRHMDQSIVHFTSRS*QEKRSHTPSRAADKTHHDSMRRARQQHRLGGYMVLHPASRA 227
            +R   +S     S S    RS +PSR+  +++      AR+     G+ VL PA+ A
Sbjct: 1124 SRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGPARRPRPRSGFDVLPPATGA 1180



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>AK121027:Os07g0655500 |
          Length = 1447

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
 Frame = -2

Query: 377  NSTFHIEKLAGEKITHTEQGCRQN-------TPRQHETGAATTPTRRLHGA 246
            N+ FH+  L G K+   E+G           TP    TGA      ++H A
Sbjct: 1009 NTGFHLPNLIGTKLLEDEEGSSSEERSFEAVTPEHEATGANEQEASQMHVA 1059


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 11,660,086
Number of extensions: 214717
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 6
Length of query: 171
Length of database: 15,399,855
Length adjustment: 93
Effective length of query: 78
Effective length of database: 11,676,042
Effective search space: 910731276
Effective search space used: 910731276
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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