ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf105c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 1.8
2gb|AC132293.3| Mus musculus BAC clone RP24-322H1 from chromosome... 44 1.8
3gb|AC133681.2| Homo sapiens 3 BAC RP11-88I21 (Roswell Park Cance... 44 1.8
4gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, co... 44 1.8
5gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Canc... 44 1.8
6gb|AC186134.2| Medicago truncatula chromosome 2 BAC clone mte1-1... 42 7.0
7ref|NM_001052949.1| Oryza sativa (japonica cultivar-group) Os02g... 42 7.0
8gb|BT027499.1| Gasterosteus aculeatus clone CGX20-H10 mRNA sequence 42 7.0
9ref|XM_976242.1| PREDICTED: Mus musculus hypothetical LOC631215 ... 42 7.0
10ref|XM_919094.2| PREDICTED: Mus musculus hypothetical LOC631215 ... 42 7.0
11ref|XM_896489.2| PREDICTED: Mus musculus hypothetical LOC621522 ... 42 7.0
12ref|XM_971377.1| PREDICTED: Tribolium castaneum hypothetical pro... 42 7.0
13gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosom... 42 7.0
14gb|AC125476.30| Medicago truncatula clone mth2-10e13, complete s... 42 7.0
15gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, co... 42 7.0
16gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete ... 42 7.0
17gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, comp... 42 7.0
18ref|XM_543277.2| PREDICTED: Canis familiaris similar to solute c... 42 7.0
19gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 7.0
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 7.0
21emb|CR954192.2| Medicago truncatula chromosome 5 clone mth2-15h3... 42 7.0
22emb|CR859774.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1026 (from cl... 42 7.0
23dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 42 7.0
24dbj|AK065504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 7.0
25gb|AY184358.1| Gasterosteus aculeatus signal peptidase 25 kDA su... 42 7.0
26gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, comp... 42 7.0
27gb|AY103682.1| Zea mays PCO122909 mRNA sequence 42 7.0
28emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-3... 42 7.0
29gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, comple... 42 7.0
30emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 42 7.0
31gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, comp... 42 7.0 
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793
 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 466     tcttcacccagcatggagttca 487
               ||||||||||||||||||||||
Sbjct: 1049651 tcttcacccagcatggagttca 1049672
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>gb|AC132293.3| Mus musculus BAC clone RP24-322H1 from chromosome 1, complete sequence
          Length = 158294

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 1414   gagagggagggtggagaggaggcagaggaa 1443
              |||| ||||||||||||||||| |||||||
Sbjct: 141832 gagaaggagggtggagaggaggaagaggaa 141803
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>gb|AC133681.2| Homo sapiens 3 BAC RP11-88I21 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 114998

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1417 agggagggtggagaggaggcag 1438
            ||||||||||||||||||||||
Sbjct: 3920 agggagggtggagaggaggcag 3941
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>gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, complete sequence
          Length = 188960

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 1414  gagagggagggtggagaggaggcagaggaa 1443
             |||| ||||||||||||||||| |||||||
Sbjct: 55442 gagaaggagggtggagaggaggaagaggaa 55413
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>gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139300

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1417  agggagggtggagaggaggcag 1438
             ||||||||||||||||||||||
Sbjct: 90636 agggagggtggagaggaggcag 90615
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>gb|AC186134.2| Medicago truncatula chromosome 2 BAC clone mte1-18i5, complete sequence
          Length = 99186

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1420  gagggtggagaggaggcagaggaag 1444
             |||| ||||||||||||||||||||
Sbjct: 11494 gaggttggagaggaggcagaggaag 11470
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>ref|NM_001052949.1| Oryza sativa (japonica cultivar-group) Os02g0244100 (Os02g0244100)
            mRNA, complete cds
          Length = 1820

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   caagagctggtggcagaaaggaggc 88
            ||||||||||||||| |||||||||
Sbjct: 1664 caagagctggtggcaaaaaggaggc 1640
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>gb|BT027499.1| Gasterosteus aculeatus clone CGX20-H10 mRNA sequence
          Length = 2248

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1193 catccaccagcccaaaggtct 1213
            |||||||||||||||||||||
Sbjct: 1070 catccaccagcccaaaggtct 1050
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>ref|XM_976242.1| PREDICTED: Mus musculus hypothetical LOC631215 (LOC631215), mRNA
          Length = 330

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 ctgtggctgtggaggctgcgg 439
           |||||||||||||||||||||
Sbjct: 54  ctgtggctgtggaggctgcgg 74
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>ref|XM_919094.2| PREDICTED: Mus musculus hypothetical LOC631215 (LOC631215), mRNA
          Length = 330

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 ctgtggctgtggaggctgcgg 439
           |||||||||||||||||||||
Sbjct: 54  ctgtggctgtggaggctgcgg 74
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>ref|XM_896489.2| PREDICTED: Mus musculus hypothetical LOC621522 (LOC621522), mRNA
          Length = 330

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 ctgtggctgtggaggctgcgg 439
           |||||||||||||||||||||
Sbjct: 54  ctgtggctgtggaggctgcgg 74
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>ref|XM_971377.1| PREDICTED: Tribolium castaneum hypothetical protein LOC664014
            (LOC664014), mRNA
          Length = 798

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1503 gacctcagagccgttggatct 1523
            |||||||||||||||||||||
Sbjct: 244  gacctcagagccgttggatct 224
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>gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosome 3, complete sequence
          Length = 175414

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 483   gttcactcctgattccccgaagctc 507
             |||||||||||||||||| ||||||
Sbjct: 60650 gttcactcctgattcccctaagctc 60626
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>gb|AC125476.30| Medicago truncatula clone mth2-10e13, complete sequence
          Length = 153919

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1420  gagggtggagaggaggcagaggaag 1444
             |||| ||||||||||||||||||||
Sbjct: 53958 gaggttggagaggaggcagaggaag 53982
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>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence
          Length = 189865

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 483   gttcactcctgattccccgaagctc 507
             |||||||||||||||||| ||||||
Sbjct: 65983 gttcactcctgattcccctaagctc 66007
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>gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete sequence
          Length = 114449

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1420  gagggtggagaggaggcagaggaag 1444
             |||| ||||||||||||||||||||
Sbjct: 57004 gaggttggagaggaggcagaggaag 57028
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>gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, complete sequence
          Length = 215599

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   ctgtggctgtggaggctgcgg 439
             |||||||||||||||||||||
Sbjct: 29786 ctgtggctgtggaggctgcgg 29766
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>ref|XM_543277.2| PREDICTED: Canis familiaris similar to solute carrier family 19,
           member 3 (LOC486151), mRNA
          Length = 1827

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 ctgtggctgtggaggctgcgg 439
           |||||||||||||||||||||
Sbjct: 9   ctgtggctgtggaggctgcgg 29
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 726     cttcaagggtttgcgcaagct 746
               |||||||||||||||||||||
Sbjct: 1309245 cttcaagggtttgcgcaagct 1309265
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 64      caagagctggtggcagaaaggaggc 88
               ||||||||||||||| |||||||||
Sbjct: 8120594 caagagctggtggcaaaaaggaggc 8120570
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>emb|CR954192.2| Medicago truncatula chromosome 5 clone mth2-15h3, COMPLETE SEQUENCE
          Length = 118151

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1420  gagggtggagaggaggcagaggaag 1444
             |||| ||||||||||||||||||||
Sbjct: 92402 gaggttggagaggaggcagaggaag 92426
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>emb|CR859774.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1026 (from clone DKFZp469L1026)
          Length = 2704

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1429 gaggaggcagaggaaggcggggaga 1453
            |||||||||||||||||||| ||||
Sbjct: 1299 gaggaggcagaggaaggcggagaga 1275
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 64     caagagctggtggcagaaaggaggc 88
              ||||||||||||||| |||||||||
Sbjct: 108787 caagagctggtggcaaaaaggaggc 108763
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>dbj|AK065504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027C16, full
            insert sequence
          Length = 1823

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   caagagctggtggcagaaaggaggc 88
            ||||||||||||||| |||||||||
Sbjct: 1667 caagagctggtggcaaaaaggaggc 1643
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>gb|AY184358.1| Gasterosteus aculeatus signal peptidase 25 kDA subunit mRNA, partial
            cds
          Length = 622

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1193 catccaccagcccaaaggtct 1213
            |||||||||||||||||||||
Sbjct: 127  catccaccagcccaaaggtct 107
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>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence
          Length = 169201

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   ctgtggctgtggaggctgcgg 439
             |||||||||||||||||||||
Sbjct: 44161 ctgtggctgtggaggctgcgg 44181
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>gb|AY103682.1| Zea mays PCO122909 mRNA sequence
          Length = 1641

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1270 tccttgggggcctccttctcctttccctt 1298
            |||||||||||| | ||||||||||||||
Sbjct: 159  tccttgggggccccattctcctttccctt 131
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>emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-388E23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206533

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1424   gtggagaggaggcagaggaag 1444
              |||||||||||||||||||||
Sbjct: 114707 gtggagaggaggcagaggaag 114687
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>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence
          Length = 182809

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1422  gggtggagaggaggcagagga 1442
             |||||||||||||||||||||
Sbjct: 61491 gggtggagaggaggcagagga 61511
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>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 1414  gagagggagggtggagaggaggcagagga 1442
             ||||||||||| |||||||||| ||||||
Sbjct: 99303 gagagggagggcggagaggagggagagga 99331
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>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 1269   ctccttgggggcctccttctcctttccct 1297
              |||| |||||||||||| |||||||||||
Sbjct: 135954 ctccctgggggcctcctcctcctttccct 135926


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 238,233,455
Number of extensions: 12912024
Number of successful extensions: 304638
Number of sequences better than 10.0: 31
Number of HSP's gapped: 304638
Number of HSP's successfully gapped: 31
Length of query: 1838
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1815
Effective length of database: 18,503,978,556
Effective search space: 33584721079140
Effective search space used: 33584721079140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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