ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf84j21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104509.1| Zea mays PCO104742 mRNA sequence Length = 1501 Score = 297 bits (150), Expect = 4e-77 Identities = 383/463 (82%) Strand = Plus / Plus Query: 287 ccgacgtgggcggagttcgagctggggaagtcgccggtgtactggaagaccaccaacggt 346 ||||||||||||||||||||||| ||| | ||||||| ||||||||||||| || ||| Sbjct: 434 ccgacgtgggcggagttcgagctcgggcgggcgccggtctactggaagaccagcagcggc 493 Query: 347 cttcctccagccccgggagagggcctgaagatattctacaacccagggacgaccaagctg 406 || || || | ||||| ||||| |||| | ||||||||||| | | |||| ||| || Sbjct: 494 ctcccgccctcgccgggcgaggggctgaccctgttctacaacccggcggcgacgaagatg 553 Query: 407 acacccaacgagcagttcggcatcgccttcaacgggggctttaaccagcccatcatgtgc 466 | || |||||| ||||||| | || |||||||| ||||| |||||||||||||||||| Sbjct: 554 gccccgaacgaggtgttcggcgtggcgttcaacggcggcttcaaccagcccatcatgtgc 613 Query: 467 ggcggcgagccgaggcagatgacgctgcaagagagggggaaagcctgnnnnnnnatctac 526 ||||| ||||||||||||||||||||||| ||| |||| |||||| |||||| Sbjct: 614 ggcggagagccgaggcagatgacgctgcaggagcggggcaaagccgacccgcccatctac 673 Query: 527 accatcaggatacgggtgccgcagcatgccatgacactggttttctccttcaccaacgga 586 |||||||||||||| ||||||||||| ||| | | || | ||||||||||||||||| Sbjct: 674 accatcaggatacgcgtgccgcagcacgccgtaagcttgatcttctccttcaccaacggg 733 Query: 587 agcgaatgggacggggcttacaccctcaaattcaaggtccccaaaccatggctcaacaag 646 ||| ||||||||| | ||||| ||||| |||| ||||||||| ||||||| |||||| Sbjct: 734 gccgagtgggacgggccgtacacgctcaagttcagggtccccaagccatggcagaacaag 793 Query: 647 cctctgagcttcttcaacgaggggctggctgacgagctcaacatggagggcgcctgcgac 706 || |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| Sbjct: 794 ccgctgagcttcttcaacgagggcctggcggacgagctcaacagggagggcgcctgcgac 853 Query: 707 agggccatctttccggatgaaaacatcgtcatcacgagctgcg 749 |||||||| ||||| || ||||||| |||||| ||||||| Sbjct: 854 ctggccatctacccggacgagaacatcgccatcaccagctgcg 896 Score = 107 bits (54), Expect = 8e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 782 cggtgcaagctggacatcgtgaccgggtgcatggaccggacctcgcacatgttcgaccca 841 |||||||||||||| ||||||| |||||||| ||||| | ||| ||||||||||||| Sbjct: 1041 cggtgcaagctggatatcgtgagcgggtgcacggaccccagctccgacatgttcgacccg 1100 Query: 842 ctggccaccatcgacgacggctcctgcccgctggactctgattcggagga 891 ||||||||| ||||||||||||||||||| || || |||||||| ||||| Sbjct: 1101 ctggccaccgtcgacgacggctcctgcccactcgagtctgattccgagga 1150
>emb|CT829478.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA002B06, full insert sequence Length = 1133 Score = 222 bits (112), Expect = 2e-54 Identities = 304/368 (82%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatgccatgacactggttttctccttcaccaac 583 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||| Sbjct: 501 tacaccatcaggatacgtgtgccgcagcatgccatgaccctcgtcttctccttcacaaac 560 Query: 584 ggaagcgaatgggacggggcttacaccctcaaattcaaggtccccaaaccatggctcaac 643 || || ||||| || | ||||||||||| |||| ||||||||| |||||||||||| Sbjct: 561 ggggtggattgggatggaccgtacaccctcaagttcagggtccccaagccatggctcaac 620 Query: 644 aagcctctgagcttcttcaacgaggggctggctgacgagctcaacatggagggcgcctgc 703 ||||| ||||||||||||||||||| || || ||||| || |||| || || || ||| Sbjct: 621 aagcccttgagcttcttcaacgagggtctagcagacgaactgaacagagaaggggcatgc 680 Query: 704 gacagggccatctttccggatgaaaacatcgtcatcacgagctgcgatatcggcggcttc 763 ||||| |||||||| || || |||||| | |||||||| |||||||| || ||| ||| | Sbjct: 681 gacagagccatcttcccagacgaaaacgttgtcatcacaagctgcgagatgggcagctac 740 Query: 764 tacgaggagggaggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacc 823 ||||| ||||| ||||| || |||||||||||||| ||| | ||||||||||| | | | Sbjct: 741 tacgaagaggggggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaac 800 Query: 824 tcgcacatgttcgacccactggccaccatcgacgacggctcctgcccgctggactctgat 883 ||||||||||| || ||||| |||||| | || ||||| || ||||| |||| || ||| Sbjct: 801 tcgcacatgtttgatccactcgccaccgtggatgacggatcatgcccaatggattccgat 860 Query: 884 tcggagga 891 || ||||| Sbjct: 861 tccgagga 868 Score = 204 bits (103), Expect = 5e-49 Identities = 211/247 (85%) Strand = Plus / Plus Query: 258 ccgtgcctcaaaccaaggagtgcaagcttccgacgtgggcggagttcgagctggggaagt 317 ||||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||| Sbjct: 235 ccgtgccgcagaccaacgagtgctcgcttccgacatgggcggagttcgagctgggcaagg 294 Query: 318 cgccggtgtactggaagaccaccaacggtcttcctccagccccgggagagggcctgaaga 377 ||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| Sbjct: 295 cgccggtctactggaagaccatgaacggtcttcctccatcggctggagagggcctgatcc 354 Query: 378 tattctacaacccagggacgaccaagctgacacccaacgagcagttcggcatcgccttca 437 | ||||||||||| | |||||||| |||| ||||||| ||||| |||||||| || | Sbjct: 355 ttttctacaacccggcagcgaccaagatgacccccaacgctcagtttggcatcgcgttta 414 Query: 438 acgggggctttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaag 497 | || || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct: 415 atggtggttttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaag 474 Query: 498 agagggg 504 ||||||| Sbjct: 475 agagggg 481
>ref|NM_001057104.1| Oryza sativa (japonica cultivar-group) Os03g0586500 (Os03g0586500) mRNA, complete cds Length = 1127 Score = 222 bits (112), Expect = 2e-54 Identities = 304/368 (82%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatgccatgacactggttttctccttcaccaac 583 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||| Sbjct: 500 tacaccatcaggatacgtgtgccgcagcatgccatgaccctcgtcttctccttcacaaac 559 Query: 584 ggaagcgaatgggacggggcttacaccctcaaattcaaggtccccaaaccatggctcaac 643 || || ||||| || | ||||||||||| |||| ||||||||| |||||||||||| Sbjct: 560 ggggtggattgggatggaccgtacaccctcaagttcagggtccccaagccatggctcaac 619 Query: 644 aagcctctgagcttcttcaacgaggggctggctgacgagctcaacatggagggcgcctgc 703 ||||| ||||||||||||||||||| || || ||||| || |||| || || || ||| Sbjct: 620 aagcccttgagcttcttcaacgagggtctagcagacgaactgaacagagaaggggcatgc 679 Query: 704 gacagggccatctttccggatgaaaacatcgtcatcacgagctgcgatatcggcggcttc 763 ||||| |||||||| || || |||||| | |||||||| |||||||| || ||| ||| | Sbjct: 680 gacagagccatcttcccagacgaaaacgttgtcatcacaagctgcgagatgggcagctac 739 Query: 764 tacgaggagggaggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacc 823 ||||| ||||| ||||| || |||||||||||||| ||| | ||||||||||| | | | Sbjct: 740 tacgaagaggggggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaac 799 Query: 824 tcgcacatgttcgacccactggccaccatcgacgacggctcctgcccgctggactctgat 883 ||||||||||| || ||||| |||||| | || ||||| || ||||| |||| || ||| Sbjct: 800 tcgcacatgtttgatccactcgccaccgtggatgacggatcatgcccaatggattccgat 859 Query: 884 tcggagga 891 || ||||| Sbjct: 860 tccgagga 867 Score = 204 bits (103), Expect = 5e-49 Identities = 211/247 (85%) Strand = Plus / Plus Query: 258 ccgtgcctcaaaccaaggagtgcaagcttccgacgtgggcggagttcgagctggggaagt 317 ||||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||| Sbjct: 234 ccgtgccgcagaccaacgagtgctcgcttccgacatgggcggagttcgagctgggcaagg 293 Query: 318 cgccggtgtactggaagaccaccaacggtcttcctccagccccgggagagggcctgaaga 377 ||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| Sbjct: 294 cgccggtctactggaagaccatgaacggtcttcctccatcggctggagagggcctgatcc 353 Query: 378 tattctacaacccagggacgaccaagctgacacccaacgagcagttcggcatcgccttca 437 | ||||||||||| | |||||||| |||| ||||||| ||||| |||||||| || | Sbjct: 354 ttttctacaacccggcagcgaccaagatgacccccaacgctcagtttggcatcgcgttta 413 Query: 438 acgggggctttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaag 497 | || || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct: 414 atggtggttttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaag 473 Query: 498 agagggg 504 ||||||| Sbjct: 474 agagggg 480
>dbj|AK068097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D23, full insert sequence Length = 1129 Score = 222 bits (112), Expect = 2e-54 Identities = 304/368 (82%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatgccatgacactggttttctccttcaccaac 583 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||| Sbjct: 502 tacaccatcaggatacgtgtgccgcagcatgccatgaccctcgtcttctccttcacaaac 561 Query: 584 ggaagcgaatgggacggggcttacaccctcaaattcaaggtccccaaaccatggctcaac 643 || || ||||| || | ||||||||||| |||| ||||||||| |||||||||||| Sbjct: 562 ggggtggattgggatggaccgtacaccctcaagttcagggtccccaagccatggctcaac 621 Query: 644 aagcctctgagcttcttcaacgaggggctggctgacgagctcaacatggagggcgcctgc 703 ||||| ||||||||||||||||||| || || ||||| || |||| || || || ||| Sbjct: 622 aagcccttgagcttcttcaacgagggtctagcagacgaactgaacagagaaggggcatgc 681 Query: 704 gacagggccatctttccggatgaaaacatcgtcatcacgagctgcgatatcggcggcttc 763 ||||| |||||||| || || |||||| | |||||||| |||||||| || ||| ||| | Sbjct: 682 gacagagccatcttcccagacgaaaacgttgtcatcacaagctgcgagatgggcagctac 741 Query: 764 tacgaggagggaggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacc 823 ||||| ||||| ||||| || |||||||||||||| ||| | ||||||||||| | | | Sbjct: 742 tacgaagaggggggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaac 801 Query: 824 tcgcacatgttcgacccactggccaccatcgacgacggctcctgcccgctggactctgat 883 ||||||||||| || ||||| |||||| | || ||||| || ||||| |||| || ||| Sbjct: 802 tcgcacatgtttgatccactcgccaccgtggatgacggatcatgcccaatggattccgat 861 Query: 884 tcggagga 891 || ||||| Sbjct: 862 tccgagga 869 Score = 204 bits (103), Expect = 5e-49 Identities = 211/247 (85%) Strand = Plus / Plus Query: 258 ccgtgcctcaaaccaaggagtgcaagcttccgacgtgggcggagttcgagctggggaagt 317 ||||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||| Sbjct: 236 ccgtgccgcagaccaacgagtgctcgcttccgacatgggcggagttcgagctgggcaagg 295 Query: 318 cgccggtgtactggaagaccaccaacggtcttcctccagccccgggagagggcctgaaga 377 ||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| Sbjct: 296 cgccggtctactggaagaccatgaacggtcttcctccatcggctggagagggcctgatcc 355 Query: 378 tattctacaacccagggacgaccaagctgacacccaacgagcagttcggcatcgccttca 437 | ||||||||||| | |||||||| |||| ||||||| ||||| |||||||| || | Sbjct: 356 ttttctacaacccggcagcgaccaagatgacccccaacgctcagtttggcatcgcgttta 415 Query: 438 acgggggctttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaag 497 | || || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct: 416 atggtggttttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaag 475 Query: 498 agagggg 504 ||||||| Sbjct: 476 agagggg 482
>dbj|AK059901.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G07, full insert sequence Length = 1116 Score = 222 bits (112), Expect = 2e-54 Identities = 304/368 (82%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatgccatgacactggttttctccttcaccaac 583 ||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||| Sbjct: 496 tacaccatcaggatacgtgtgccgcagcatgccatgaccctcgtcttctccttcacaaac 555 Query: 584 ggaagcgaatgggacggggcttacaccctcaaattcaaggtccccaaaccatggctcaac 643 || || ||||| || | ||||||||||| |||| ||||||||| |||||||||||| Sbjct: 556 ggggtggattgggatggaccgtacaccctcaagttcagggtccccaagccatggctcaac 615 Query: 644 aagcctctgagcttcttcaacgaggggctggctgacgagctcaacatggagggcgcctgc 703 ||||| ||||||||||||||||||| || || ||||| || |||| || || || ||| Sbjct: 616 aagcccttgagcttcttcaacgagggtctagcagacgaactgaacagagaaggggcatgc 675 Query: 704 gacagggccatctttccggatgaaaacatcgtcatcacgagctgcgatatcggcggcttc 763 ||||| |||||||| || || |||||| | |||||||| |||||||| || ||| ||| | Sbjct: 676 gacagagccatcttcccagacgaaaacgttgtcatcacaagctgcgagatgggcagctac 735 Query: 764 tacgaggagggaggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacc 823 ||||| ||||| ||||| || |||||||||||||| ||| | ||||||||||| | | | Sbjct: 736 tacgaagaggggggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaac 795 Query: 824 tcgcacatgttcgacccactggccaccatcgacgacggctcctgcccgctggactctgat 883 ||||||||||| || ||||| |||||| | || ||||| || ||||| |||| || ||| Sbjct: 796 tcgcacatgtttgatccactcgccaccgtggatgacggatcatgcccaatggattccgat 855 Query: 884 tcggagga 891 || ||||| Sbjct: 856 tccgagga 863 Score = 204 bits (103), Expect = 5e-49 Identities = 211/247 (85%) Strand = Plus / Plus Query: 258 ccgtgcctcaaaccaaggagtgcaagcttccgacgtgggcggagttcgagctggggaagt 317 ||||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||| Sbjct: 230 ccgtgccgcagaccaacgagtgctcgcttccgacatgggcggagttcgagctgggcaagg 289 Query: 318 cgccggtgtactggaagaccaccaacggtcttcctccagccccgggagagggcctgaaga 377 ||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| Sbjct: 290 cgccggtctactggaagaccatgaacggtcttcctccatcggctggagagggcctgatcc 349 Query: 378 tattctacaacccagggacgaccaagctgacacccaacgagcagttcggcatcgccttca 437 | ||||||||||| | |||||||| |||| ||||||| ||||| |||||||| || | Sbjct: 350 ttttctacaacccggcagcgaccaagatgacccccaacgctcagtttggcatcgcgttta 409 Query: 438 acgggggctttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaag 497 | || || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct: 410 atggtggttttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaag 469 Query: 498 agagggg 504 ||||||| Sbjct: 470 agagggg 476
>emb|CT829477.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120F09, full insert sequence Length = 1930 Score = 123 bits (62), Expect = 1e-24 Identities = 143/170 (84%) Strand = Plus / Plus Query: 605 tacaccctcaaattcaaggtccccaaaccatggctcaacaagcctctgagcttcttcaac 664 ||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 1284 tacaccctcaagttcagggtccccaagccatggctcaacaagcccttgagcttcttcaac 1343 Query: 665 gaggggctggctgacgagctcaacatggagggcgcctgcgacagggccatctttccggat 724 ||||| || || ||||| || |||| || || || |||||||| |||||||| || || Sbjct: 1344 gagggtctagcagacgaactgaacagagaaggggcatgcgacagagccatcttcccagac 1403 Query: 725 gaaaacatcgtcatcacgagctgcgatatcggcggcttctacgaggaggg 774 |||||| | |||||||| |||||||| || ||| ||| |||||| ||||| Sbjct: 1404 gaaaacgttgtcatcacaagctgcgagatgggcagctactacgaagaggg 1453 Score = 119 bits (60), Expect = 2e-23 Identities = 123/144 (85%) Strand = Plus / Plus Query: 361 gggagagggcctgaagatattctacaacccagggacgaccaagctgacacccaacgagca 420 |||||||||||||| | ||||||||||| | |||||||| |||| ||||||| || Sbjct: 797 gggagagggcctgatccttttctacaacccggcagcgaccaagatgacccccaacgctca 856 Query: 421 gttcggcatcgccttcaacgggggctttaaccagcccatcatgtgcggcggcgagccgag 480 ||| |||||||| || || || || ||||||||||| ||||||||||| || |||||||| Sbjct: 857 gtttggcatcgcgtttaatggtggttttaaccagccgatcatgtgcggtggtgagccgag 916 Query: 481 gcagatgacgctgcaagagagggg 504 |||||||||||||||||||||||| Sbjct: 917 gcagatgacgctgcaagagagggg 940 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 283 gcttccgacgtgggcggagttcgagctggggaagtcgccggtgtactggaagaccaccaa 342 ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| || Sbjct: 344 gcttccgacatgggcggagttcgagctgggcaaggcgccggtctactggaagaccatgaa 403 Query: 343 cggtcttcctcca 355 ||||||||||||| Sbjct: 404 cggtcttcctcca 416 Score = 56.0 bits (28), Expect = 3e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 776 ggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacctcgcacatgttc 835 ||||| || |||||||||||||| ||| | ||||||||||| | | |||||||||||| Sbjct: 1550 ggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaactcgcacatgttt 1609 Query: 836 gacccactggccaccatcgacgacggctcctgcccgctggactctgattcggagga 891 || ||||| |||||| | || ||||| || ||||| |||| || ||||| ||||| Sbjct: 1610 gatccactcgccaccgtggatgacggatcatgcccaatggattccgattccgagga 1665 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatg 554 ||||||||||||||||| ||||||||||||| Sbjct: 960 tacaccatcaggatacgtgtgccgcagcatg 990
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 283 gcttccgacgtgggcggagttcgagctggggaagtcgccggtgtactggaagaccaccaa 342 ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| || Sbjct: 136122 gcttccgacatgggcggagttcgagctgggcaaggcgccggtctactggaagaccatgaa 136181 Query: 343 cggtcttcctcca 355 ||||||||||||| Sbjct: 136182 cggtcttcctcca 136194 Score = 93.7 bits (47), Expect = 1e-15 Identities = 56/59 (94%) Strand = Plus / Plus Query: 446 tttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaagagagggg 504 ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 136779 tttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaagagagggg 136837 Score = 87.7 bits (44), Expect = 8e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 605 tacaccctcaaattcaaggtccccaaaccatggctcaacaagcctctgagcttcttcaac 664 ||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 137181 tacaccctcaagttcagggtccccaagccatggctcaacaagcccttgagcttcttcaac 137240 Query: 665 gagg 668 |||| Sbjct: 137241 gagg 137244 Score = 56.0 bits (28), Expect = 3e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 776 ggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacctcgcacatgttc 835 ||||| || |||||||||||||| ||| | ||||||||||| | | |||||||||||| Sbjct: 137642 ggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaactcgcacatgttt 137701 Query: 836 gacccactggccaccatcgacgacggctcctgcccgctggactctgattcggagga 891 || ||||| |||||| | || ||||| || ||||| |||| || ||||| ||||| Sbjct: 137702 gatccactcgccaccgtggatgacggatcatgcccaatggattccgattccgagga 137757 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatg 554 ||||||||||||||||| ||||||||||||| Sbjct: 136857 tacaccatcaggatacgtgtgccgcagcatg 136887
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 283 gcttccgacgtgggcggagttcgagctggggaagtcgccggtgtactggaagaccaccaa 342 ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| || Sbjct: 21436240 gcttccgacatgggcggagttcgagctgggcaaggcgccggtctactggaagaccatgaa 21436299 Query: 343 cggtcttcctcca 355 ||||||||||||| Sbjct: 21436300 cggtcttcctcca 21436312 Score = 93.7 bits (47), Expect = 1e-15 Identities = 56/59 (94%) Strand = Plus / Plus Query: 446 tttaaccagcccatcatgtgcggcggcgagccgaggcagatgacgctgcaagagagggg 504 ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 21436897 tttaaccagccgatcatgtgcggtggtgagccgaggcagatgacgctgcaagagagggg 21436955 Score = 87.7 bits (44), Expect = 8e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 605 tacaccctcaaattcaaggtccccaaaccatggctcaacaagcctctgagcttcttcaac 664 ||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 21437299 tacaccctcaagttcagggtccccaagccatggctcaacaagcccttgagcttcttcaac 21437358 Query: 665 gagg 668 |||| Sbjct: 21437359 gagg 21437362 Score = 56.0 bits (28), Expect = 3e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 776 ggagaccggtgcaagctggacatcgtgaccgggtgcatggaccggacctcgcacatgttc 835 ||||| || |||||||||||||| ||| | ||||||||||| | | |||||||||||| Sbjct: 21437760 ggagatcgctgcaagctggacattgtgtcagggtgcatggatccaaactcgcacatgttt 21437819 Query: 836 gacccactggccaccatcgacgacggctcctgcccgctggactctgattcggagga 891 || ||||| |||||| | || ||||| || ||||| |||| || ||||| ||||| Sbjct: 21437820 gatccactcgccaccgtggatgacggatcatgcccaatggattccgattccgagga 21437875 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 524 tacaccatcaggatacgggtgccgcagcatg 554 ||||||||||||||||| ||||||||||||| Sbjct: 21436975 tacaccatcaggatacgtgtgccgcagcatg 21437005
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 174 cgcgggccaccgtcgtcacctg 195 |||||||||||||||||||||| Sbjct: 814684 cgcgggccaccgtcgtcacctg 814663 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 cgcgggccaccgtcgtcacctg 195 |||||||||||||||||||||| Sbjct: 8281674 cgcgggccaccgtcgtcacctg 8281695
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 406 gacacccaacgagcagttcggcatcg 431 |||||||| ||||||||||||||||| Sbjct: 1464822 gacacccatcgagcagttcggcatcg 1464847
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 218 cgcgcggccgcctctgccaccgcagcggcgcccgcgtccacc 259 ||||| |||||||||||| |||| || ||| ||||||||||| Sbjct: 1233591 cgcgccgccgcctctgcctccgccgccgcggccgcgtccacc 1233632
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 218 cgcgcggccgcctctgccaccgcagcggcgcccgcgtccacc 259 ||||| |||||||||||| |||| || ||| ||||||||||| Sbjct: 146828 cgcgccgccgcctctgcctccgccgccgcggccgcgtccacc 146869
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 218 cgcgcggccgcctctgccaccgcagcggcgcccgcgtccacc 259 ||||| |||||||||||| |||| || ||| ||||||||||| Sbjct: 62898 cgcgccgccgcctctgcctccgccgccgcggccgcgtccacc 62939
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 218 cgcgcggccgcctctgccaccgcagcggcgcccgcgtccacc 259 ||||| |||||||||||| |||| || ||| ||||||||||| Sbjct: 100670 cgcgccgccgcctctgcctccgccgccgcggccgcgtccacc 100711
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174309 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 ccacacctgcaaaaccaaagga 49 |||||||||||||||||||||| Sbjct: 36245 ccacacctgcaaaaccaaagga 36224
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cggccgtcgtccgcgcggccgcctc 231 ||||| ||||||||||||||||||| Sbjct: 1097342 cggccatcgtccgcgcggccgcctc 1097366
>gb|CP000460.1| Burkholderia cenocepacia HI2424 chromosome 3, complete genome Length = 1055417 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 cggcggcggcagcaccgcctt 150 ||||||||||||||||||||| Sbjct: 680686 cggcggcggcagcaccgcctt 680666
>dbj|AK238485.1| Sus scrofa mRNA, clone:TES010038A02, expressed in testis Length = 1921 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 agggacgaccaagctgacacccaac 415 ||||||||||| ||||||||||||| Sbjct: 217 agggacgaccatgctgacacccaac 193
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 842 ctggccaccatcgacgacggctcct 866 ||||||||||||||||||| ||||| Sbjct: 2020696 ctggccaccatcgacgacgtctcct 2020720
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 cggcggcggcagcaccgcctt 150 ||||||||||||||||||||| Sbjct: 1503307 cggcggcggcagcaccgcctt 1503327
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 atcatgtgcggcggcgagccg 478 ||||||||||||||||||||| Sbjct: 2587413 atcatgtgcggcggcgagccg 2587433
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 caccgtcgtcacctgccggag 201 ||||||||||||||||||||| Sbjct: 3656834 caccgtcgtcacctgccggag 3656814
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0079E01, complete sequence Length = 132870 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 gccgtcgtccgcgcggccgcc 229 ||||||||||||||||||||| Sbjct: 10392 gccgtcgtccgcgcggccgcc 10372
>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053D03, from chromosome 10, complete sequence Length = 199113 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 gccgtcgtccgcgcggccgcc 229 ||||||||||||||||||||| Sbjct: 174168 gccgtcgtccgcgcggccgcc 174148
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 gccgtcgtccgcgcggccgcc 229 ||||||||||||||||||||| Sbjct: 8082311 gccgtcgtccgcgcggccgcc 8082331
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cggccgtcgtccgcgcggccgcctc 231 ||||| ||||||||||||||||||| Sbjct: 1019151 cggccatcgtccgcgcggccgcctc 1019175
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 470 ggcgagccgaggcagatgacgctgc 494 |||||||||| |||||||||||||| Sbjct: 609208 ggcgagccgacgcagatgacgctgc 609184
>emb|CT025818.2| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in Acinetobacter baumannii Length = 1386 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 984 gtcctcttctctttgtttata 1004 ||||||||||||||||||||| Sbjct: 452 gtcctcttctctttgtttata 472
>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete sequence Length = 192787 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 933 caatatgtacttactataaaa 953 ||||||||||||||||||||| Sbjct: 90269 caatatgtacttactataaaa 90249 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 166,652,948 Number of extensions: 9331861 Number of successful extensions: 192288 Number of sequences better than 10.0: 29 Number of HSP's gapped: 192287 Number of HSP's successfully gapped: 53 Length of query: 1057 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1034 Effective length of database: 18,503,978,556 Effective search space: 19133113826904 Effective search space used: 19133113826904 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
