>P15995:ATP6_STRPU ATP synthase a chain - Strongylocentrotus purpuratus (Purple sea|
           urchin)
          Length = 229
 Score = 35.0 bits (79), Expect = 0.61
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
 Frame = +1

Query: 298 GSLAALFNGVLVINLVIGLFAVVAIESSSQRLGRTYALLLFFAIVLDVAWFIL-----FS 462
           G +A +F  +L++N V+GLF   A +S +  +  TY+L     + +++  F L      S
Sbjct: 72  GLIAGVFVLILLVN-VLGLFPPYAFQSPTSNISLTYSLGFPLWMAINILGFYLAFNSRLS 130

Query: 463 HAIWNSTPD------------EKYGQLFVFSLRLALWMQTIGFSVRFLSSFIWIQMYRLG 606
           H +   TP               + Q     LRLA  +      +  LS+ IW+    L 
Sbjct: 131 HLVPQGTPSALIPLMVWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTAIWLLSSSLM 190

Query: 607 VS 612
           +S
Sbjct: 191 IS 192

>P36026:UBP11_YEAST Ubiquitin carboxyl-terminal hydrolase 11 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 717

 Score = 32.0 bits (71), Expect = 5.2
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -2

Query: 429 DSKEEQESVSPAKSLTTTF---NRNNSK*PYHKVYHKNPIEQRSKRSNQRTT 283
           DSK ++E ++  K  +T F   +R+ SK P+H  +H +  +  +K + +R +
Sbjct: 527 DSKSKKEEITSQKKKSTIFGFHSRSRSKSPHHHHHHHHSSDDSTKNAKKRNS 578

>Q9Y342:PLLP_HUMAN Plasmolipin - Homo sapiens (Human)|
          Length = 182

 Score = 32.0 bits (71), Expect = 5.2
 Identities = 20/96 (20%), Positives = 48/96 (50%)
 Frame = +1

Query: 295 IGSLAALFNGVLVINLVIGLFAVVAIESSSQRLGRTYALLLFFAIVLDVAWFILFSHAIW 474
           +G + +    ++++ LV+GL     I  +   L   Y  ++F A+ L +   +LF+  ++
Sbjct: 30  LGFVRSRLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLF 89

Query: 475 NSTPDEKYGQLFVFSLRLALWMQTIGFSVRFLSSFI 582
                + + +L++    L L +  I  +V ++++FI
Sbjct: 90  -----QLHMKLYMVPWPLVLMIFNISATVLYITAFI 120


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 173,911,650
Number of extensions: 3399704
Number of successful extensions: 9315
Number of sequences better than 10.0: 3
Number of HSP's gapped: 9283
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 281
Effective length of database: 69,142,514
Effective search space: 19429046434
Effective search space used: 19429046434
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)