| Clone Name | FLbaf59b13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA sequence Length = 2114 Score = 563 bits (284), Expect = e-157 Identities = 323/336 (96%) Strand = Plus / Minus Query: 255 ccgcttcataacctacaggctggagaaccagaaggaggtcattgtggaccaaaccgggca 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 623 ccgcttcataacctacaggctggagaaccagaaggaggtcattgtggaccaaactgggga 564 Query: 315 gcgcgatgccacctatgaggatttcaccaagaccctccctgaaaacgactgccgattcgc 374 ||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 563 gcgtgaggcaacctatgaggacttcaccaagaccctccctgagaacgactgccgattcgc 504 Query: 375 agtgtttgacttcgacttcaccaccccggaggatgtgccaaagagcaggatcttctatat 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 agtgtttgacttcgacttcaccaccccggaggatgtgccaaagagcaggatcttctatat 444 Query: 435 cttctggtccccagacaccgcaaaggtgaggagcaagatgacgtacgcaagcaccaacga 494 |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 443 cttctggtcccccgacacggcaaaggtgaggagcaagatgacgtacgcgagcaccaacga 384 Query: 495 gaagttcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcga 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 gaagttcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcga 324 Query: 555 aatcagcctggacgtgatcaaggagcgcgcacacta 590 ||| ||||| |||||||||||||||||||| ||||| Sbjct: 323 aatgagcctcgacgtgatcaaggagcgcgcgcacta 288 Score = 145 bits (73), Expect = 3e-31 Identities = 76/77 (98%) Strand = Plus / Minus Query: 656 ttatgtcaattatagatttggcggtgtgactcttgaaactttcttgatgatttgtggctt 715 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 ttatgtcaaatatagatttggcggtgtgactcttgaaactttcttgatgatttgtggctt 195 Query: 716 tgttaccgtgtcgaaag 732 ||||||||||||||||| Sbjct: 194 tgttaccgtgtcgaaag 178 Score = 107 bits (54), Expect = 7e-20 Identities = 103/118 (87%), Gaps = 6/118 (5%) Strand = Plus / Minus Query: 772 tctatcatgtaatccgttccttcttccgctgcccatttatatgccgggcgttatgctgct 831 |||||||||||||| |||| || ||| |||||||| ||||||||||| |||||||||| Sbjct: 138 tctatcatgtaatctgttcttt-ttcttgtgcccattgatatgccgggccttatgctgct 80 Query: 832 gcactg-----ttcttccaagttctggttataaataattaaatgttctgtttggattc 884 |||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 79 gcactgcactgttcttccaagttacggttataaataattaaatgttctgtttggattc 22
>ref|NM_001058256.1| Oryza sativa (japonica cultivar-group) Os03g0820600 (Os03g0820600) mRNA, complete cds Length = 758 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 403 gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 462 ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| Sbjct: 349 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 408 Query: 463 aggagcaagatg 474 |||||||||||| Sbjct: 409 aggagcaagatg 420 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 205 catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 264 ||||| || |||||||||| |||| ||||| ||||||| |||||||||||||||||| Sbjct: 148 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 207 Query: 265 ac 266 || Sbjct: 208 ac 209
>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full insert sequence Length = 2390 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 403 gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 462 ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| Sbjct: 1976 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 2035 Query: 463 aggagcaagatg 474 |||||||||||| Sbjct: 2036 aggagcaagatg 2047 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 205 catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 264 ||||| || |||||||||| |||| ||||| ||||||| |||||||||||||||||| Sbjct: 1775 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 1834 Query: 265 ac 266 || Sbjct: 1835 ac 1836
>dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full insert sequence Length = 758 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 403 gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 462 ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| Sbjct: 349 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 408 Query: 463 aggagcaagatg 474 |||||||||||| Sbjct: 409 aggagcaagatg 420 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 205 catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 264 ||||| || |||||||||| |||| ||||| ||||||| |||||||||||||||||| Sbjct: 148 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 207 Query: 265 ac 266 || Sbjct: 208 ac 209
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 95.6 bits (48), Expect = 3e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 440 ggtccccagacaccgcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagt 499 ||||||| |||||| | |||||||||||||||||| |||||| ||| |||| || || Sbjct: 148289 ggtccccggacacctcgaaggtgaggagcaagatgctgtacgcgagctccaaggaccggt 148348 Query: 500 tcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcgaaatca 559 |||||||| ||||||||||||||| | ||| |||||||||||||||||||||| || | Sbjct: 148349 tcaagagggagctggacggcatccaggtggagctgcaggccaccgaccccagcgagatga 148408 Query: 560 gcctggac 567 || ||||| Sbjct: 148409 gcatggac 148416
>dbj|AK241081.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065073D04, full insert sequence Length = 746 Score = 77.8 bits (39), Expect = 6e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 451 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 510 Query: 520 atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 578 |||||||||| |||||||||||||||||||||| ||| ||| |||||| ||||||| Sbjct: 511 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 569
>ref|NM_001058255.1| Oryza sativa (japonica cultivar-group) Os03g0820500 (Os03g0820500) mRNA, complete cds Length = 453 Score = 77.8 bits (39), Expect = 6e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 322 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 381 Query: 520 atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 578 |||||||||| |||||||||||||||||||||| ||| ||| |||||| ||||||| Sbjct: 382 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 440
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 77.8 bits (39), Expect = 6e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 34217655 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 34217714 Query: 520 atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 578 |||||||||| |||||||||||||||||||||| ||| ||| |||||| ||||||| Sbjct: 34217715 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 34217773 Score = 63.9 bits (32), Expect = 9e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 403 gaggatgtgccaaagagcaggatcttctatatcttctggt 442 ||||||||||||||||||||||| ||||||||||| |||| Sbjct: 34220275 gaggatgtgccaaagagcaggatattctatatcttatggt 34220314 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 205 catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 264 ||||| || |||||||||| |||| ||||| ||||||| |||||||||||||||||| Sbjct: 34220074 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 34220133 Query: 265 ac 266 || Sbjct: 34220134 ac 34220135 Score = 48.1 bits (24), Expect = 0.055 Identities = 30/32 (93%) Strand = Plus / Plus Query: 33 ggagcagtggacgccccgacgactccatcaaa 64 ||||||||||||||| || ||||||||||||| Sbjct: 34218218 ggagcagtggacgccgcggcgactccatcaaa 34218249 Score = 46.1 bits (23), Expect = 0.22 Identities = 32/35 (91%) Strand = Plus / Plus Query: 440 ggtccccagacaccgcaaaggtgaggagcaagatg 474 |||||||||||| ||||| ||||||||||||||| Sbjct: 34220401 ggtccccagacaatgcaaaagtgaggagcaagatg 34220435
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 77.8 bits (39), Expect = 6e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 90995 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 91054 Query: 520 atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 578 |||||||||| |||||||||||||||||||||| ||| ||| |||||| ||||||| Sbjct: 91055 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 91113 Score = 63.9 bits (32), Expect = 9e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 403 gaggatgtgccaaagagcaggatcttctatatcttctggt 442 ||||||||||||||||||||||| ||||||||||| |||| Sbjct: 93615 gaggatgtgccaaagagcaggatattctatatcttatggt 93654 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 205 catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 264 ||||| || |||||||||| |||| ||||| ||||||| |||||||||||||||||| Sbjct: 93414 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 93473 Query: 265 ac 266 || Sbjct: 93474 ac 93475 Score = 48.1 bits (24), Expect = 0.055 Identities = 30/32 (93%) Strand = Plus / Plus Query: 33 ggagcagtggacgccccgacgactccatcaaa 64 ||||||||||||||| || ||||||||||||| Sbjct: 91558 ggagcagtggacgccgcggcgactccatcaaa 91589 Score = 46.1 bits (23), Expect = 0.22 Identities = 32/35 (91%) Strand = Plus / Plus Query: 440 ggtccccagacaccgcaaaggtgaggagcaagatg 474 |||||||||||| ||||| ||||||||||||||| Sbjct: 93741 ggtccccagacaatgcaaaagtgaggagcaagatg 93775
>ref|NM_001060054.1| Oryza sativa (japonica cultivar-group) Os04g0555700 (Os04g0555700) mRNA, complete cds Length = 777 Score = 73.8 bits (37), Expect = 1e-09 Identities = 124/153 (81%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||| |||||||| |||| |||||| || ||||| | |||||||||||||||||| Sbjct: 329 aagagcaagatcttcttcatctcctggtcgccggacacgtcgaaggtgaggagcaagatg 388 Query: 475 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 534 |||||| ||| |||| || |||||||||| |||||||| |||||| | ||| || Sbjct: 389 ctgtacgcgagctccaaggaccggttcaagagggagctggacgggatccaggtggagctg 448 Query: 535 caggccaccgaccccagcgaaatcagcctggac 567 ||||| ||||| |||||||| || ||| ||||| Sbjct: 449 caggcgaccgatcccagcgagatgagcatggac 481
>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor Length = 589 Score = 73.8 bits (37), Expect = 1e-09 Identities = 85/101 (84%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||||||| Sbjct: 374 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 433 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||||||||||||||| || ||||| Sbjct: 434 cagtgcgagatccaggccaccgaccccagcgagatgagcct 474
>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full insert sequence Length = 778 Score = 73.8 bits (37), Expect = 1e-09 Identities = 124/153 (81%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||| |||||||| |||| |||||| || ||||| | |||||||||||||||||| Sbjct: 330 aagagcaagatcttcttcatctcctggtcgccggacacgtcgaaggtgaggagcaagatg 389 Query: 475 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 534 |||||| ||| |||| || |||||||||| |||||||| |||||| | ||| || Sbjct: 390 ctgtacgcgagctccaaggaccggttcaagagggagctggacgggatccaggtggagctg 449 Query: 535 caggccaccgaccccagcgaaatcagcctggac 567 ||||| ||||| |||||||| || ||| ||||| Sbjct: 450 caggcgaccgatcccagcgagatgagcatggac 482
>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence Length = 779 Score = 73.8 bits (37), Expect = 1e-09 Identities = 124/153 (81%) Strand = Plus / Minus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||| |||||| | |||| ||||||||| |||||| | | ||| |||||||||||| Sbjct: 573 aagagcaagatcttgttcatctcctggtccccggacacctcgagggtcaggagcaagatg 514 Query: 475 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 534 ||||| ||| |||| || |||||||||| ||||| ||||||||| | ||| || Sbjct: 513 ctttacgcgagctccaaggaccggttcaagagggagctggagggcatccagctggagctg 454 Query: 535 caggccaccgaccccagcgaaatcagcctggac 567 |||||||||||||||||||| || ||| ||||| Sbjct: 453 caggccaccgaccccagcgagatgagcatggac 421
>gb|AY104025.1| Zea mays PCO095832 mRNA sequence Length = 894 Score = 73.8 bits (37), Expect = 1e-09 Identities = 85/101 (84%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||||||| Sbjct: 360 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 419 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||||||||||||||| || ||||| Sbjct: 420 cagtgcgagatccaggccaccgaccccagcgagatgagcct 460
>gb|DQ244412.1| Zea mays clone 7246 mRNA sequence Length = 852 Score = 71.9 bits (36), Expect = 4e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||||||||||||||||| | ||||||||| | |||| ||||||| |||||||||| Sbjct: 393 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 452 Query: 475 acgtacgcaagcaccaacgagaagttcaagag 506 ||||||||| | ||| |||| |||||||| Sbjct: 453 ctttacgcaagctcaaaccagaaattcaagag 484
>emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing factor Length = 801 Score = 71.9 bits (36), Expect = 4e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||||||||||||||||| | ||||||||| | |||| ||||||| |||||||||| Sbjct: 388 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 447 Query: 475 acgtacgcaagcaccaacgagaagttcaagag 506 ||||||||| | ||| |||| |||||||| Sbjct: 448 ctttacgcaagctcaaaccagaaattcaagag 479
>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor Length = 546 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 464 ggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatcc 523 ||||||||||| |||||| ||| |||| || | ||||| |||| ||||||||||||| Sbjct: 312 ggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatcc 371 Query: 524 agatcgagatgcaggccaccgaccccagcgaaatcagcct 563 || |||||| |||||||||||||||||||| || ||||| Sbjct: 372 agtgcgagatccaggccaccgaccccagcgagatgagcct 411
>gb|DQ244253.1| Zea mays clone 3903 mRNA sequence Length = 734 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 208 gacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcataacc 267 ||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||| | | Sbjct: 174 gacgactgcaagcgccggttcctggagctcaaggccaagaggacgcaccgcttcatcatc 233 Query: 268 tacagg 273 |||||| Sbjct: 234 tacagg 239 Score = 46.1 bits (23), Expect = 0.22 Identities = 71/87 (81%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 |||||||||||||||| ||||| ||| |||| |||| ||||||| || ||||||||| Sbjct: 429 gtgaggagcaagatgatctacgccagctccaaggagaggttcaagcgggagctggacggc 488 Query: 520 atccagatcgagatgcaggccaccgac 546 || ||| | || | |||||||||||| Sbjct: 489 attcaggtggatctccaggccaccgac 515
>gb|AY109068.1| Zea mays PCO068743 mRNA sequence Length = 731 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 208 gacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcataacc 267 ||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||| | | Sbjct: 161 gacgactgcaagcgccggttcctggagctcaaggccaagaggacgcaccgcttcatcatc 220 Query: 268 tacagg 273 |||||| Sbjct: 221 tacagg 226 Score = 46.1 bits (23), Expect = 0.22 Identities = 71/87 (81%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 |||||||||||||||| ||||| ||| |||| |||| ||||||| || ||||||||| Sbjct: 416 gtgaggagcaagatgatctacgccagctccaaggagaggttcaagcgggagctggacggc 475 Query: 520 atccagatcgagatgcaggccaccgac 546 || ||| | || | |||||||||||| Sbjct: 476 attcaggtggatctccaggccaccgac 502
>gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence Length = 837 Score = 63.9 bits (32), Expect = 9e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||||||||||||||||| | ||||||||| | |||| ||||||| |||||||||| Sbjct: 387 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 446
>gb|BT016543.1| Zea mays clone Contig376 mRNA sequence Length = 881 Score = 63.9 bits (32), Expect = 9e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||||||||||||||||| | ||||||||| | |||| ||||||| |||||||||| Sbjct: 414 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 473
>gb|AY103749.1| Zea mays PCO115125 mRNA sequence Length = 965 Score = 63.9 bits (32), Expect = 9e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 415 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 474 ||||||||||||||||||||| | ||||||||| | |||| ||||||| |||||||||| Sbjct: 437 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 496
>emb|CT835169.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027C05, full insert sequence Length = 735 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 447 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 506 Query: 520 atccagatcgagatgcaggccaccgaccccagcga 554 ||||||| || |||||||||||||||||||||| Sbjct: 507 gtccagatagacctgcaggccaccgaccccagcga 541
>emb|CT835162.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI018A13, full insert sequence Length = 726 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 447 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 506 Query: 520 atccagatcgagatgcaggccaccgaccccagcga 554 ||||||| || |||||||||||||||||||||| Sbjct: 507 gtccagatagacctgcaggccaccgaccccagcga 541
>emb|CT828455.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226M15, full insert sequence Length = 1827 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 1515 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 1574 Query: 520 atccagatcgagatgcaggccaccgaccccagcga 554 ||||||| || |||||||||||||||||||||| Sbjct: 1575 gtccagatagacctgcaggccaccgaccccagcga 1609
>emb|CT832372.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241E10, full insert sequence Length = 1881 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 460 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 519 ||||||||||||||| |||||| ||| ||||||| |||||||| | || |||||| Sbjct: 448 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 507 Query: 520 atccagatcgagatgcaggccaccgaccccagcga 554 ||||||| || |||||||||||||||||||||| Sbjct: 508 gtccagatagacctgcaggccaccgaccccagcga 542
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 61.9 bits (31), Expect = 4e-06 Identities = 91/111 (81%) Strand = Plus / Minus Query: 457 aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 516 |||||||||||||||||| |||||| ||| |||| || |||||||||| |||||| Sbjct: 27792839 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 27792780 Query: 517 ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 567 || |||||| | ||| ||||||| ||||| |||||||| || ||| ||||| Sbjct: 27792779 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 27792729
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 61.9 bits (31), Expect = 4e-06 Identities = 91/111 (81%) Strand = Plus / Minus Query: 457 aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 516 |||||||||||||||||| |||||| ||| |||| || |||||||||| |||||| Sbjct: 61509 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 61450 Query: 517 ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 567 || |||||| | ||| ||||||| ||||| |||||||| || ||| ||||| Sbjct: 61449 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 61399
>emb|CT834432.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN125H13, full insert sequence Length = 991 Score = 58.0 bits (29), Expect = 6e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||| ||| Sbjct: 448 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 507 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 508 cagtgcgagattcaggccacagaccccagcgagatgagcct 548
>ref|NM_001066183.1| Oryza sativa (japonica cultivar-group) Os07g0484200 (Os07g0484200) mRNA, complete cds Length = 883 Score = 58.0 bits (29), Expect = 6e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||| ||| Sbjct: 362 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 421 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 422 cagtgcgagattcaggccacagaccccagcgagatgagcct 462
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 58.0 bits (29), Expect = 6e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||| ||| Sbjct: 17688190 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 17688249 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 17688250 cagtgcgagattcaggccacagaccccagcgagatgagcct 17688290
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 58.0 bits (29), Expect = 6e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||| ||| Sbjct: 92223 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 92282 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 92283 cagtgcgagattcaggccacagaccccagcgagatgagcct 92323
>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full insert sequence Length = 884 Score = 58.0 bits (29), Expect = 6e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 463 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 522 |||||||||||| |||||| ||| |||| || | ||||| |||| |||||||| ||| Sbjct: 363 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 422 Query: 523 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 563 ||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 423 cagtgcgagattcaggccacagaccccagcgagatgagcct 463
>emb|CT832660.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA012C16, full insert sequence Length = 913 Score = 52.0 bits (26), Expect = 0.004 Identities = 74/90 (82%) Strand = Plus / Plus Query: 459 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 518 |||||||||||||||| ||| || ||| |||| || |||||||||| |||||||| Sbjct: 416 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 475 Query: 519 catccagatcgagatgcaggccaccgaccc 548 ||||||| | ||| |||||||||| ||||| Sbjct: 476 catccaggtggagctgcaggccactgaccc 505
>ref|NM_001054192.1| Oryza sativa (japonica cultivar-group) Os02g0663800 (Os02g0663800) mRNA, complete cds Length = 913 Score = 52.0 bits (26), Expect = 0.004 Identities = 74/90 (82%) Strand = Plus / Plus Query: 459 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 518 |||||||||||||||| ||| || ||| |||| || |||||||||| |||||||| Sbjct: 416 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 475 Query: 519 catccagatcgagatgcaggccaccgaccc 548 ||||||| | ||| |||||||||| ||||| Sbjct: 476 catccaggtggagctgcaggccactgaccc 505
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 52.0 bits (26), Expect = 0.004 Identities = 74/90 (82%) Strand = Plus / Minus Query: 459 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 518 |||||||||||||||| ||| || ||| |||| || |||||||||| |||||||| Sbjct: 26938896 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 26938837 Query: 519 catccagatcgagatgcaggccaccgaccc 548 ||||||| | ||| |||||||||| ||||| Sbjct: 26938836 catccaggtggagctgcaggccactgaccc 26938807
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 52.0 bits (26), Expect = 0.004 Identities = 74/90 (82%) Strand = Plus / Minus Query: 459 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 518 |||||||||||||||| ||| || ||| |||| || |||||||||| |||||||| Sbjct: 117439 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 117380 Query: 519 catccagatcgagatgcaggccaccgaccc 548 ||||||| | ||| |||||||||| ||||| Sbjct: 117379 catccaggtggagctgcaggccactgaccc 117350
>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full insert sequence Length = 914 Score = 52.0 bits (26), Expect = 0.004 Identities = 74/90 (82%) Strand = Plus / Plus Query: 459 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 518 |||||||||||||||| ||| || ||| |||| || |||||||||| |||||||| Sbjct: 417 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 476 Query: 519 catccagatcgagatgcaggccaccgaccc 548 ||||||| | ||| |||||||||| ||||| Sbjct: 477 catccaggtggagctgcaggccactgaccc 506
>gb|DQ245781.1| Zea mays clone 20290 mRNA sequence Length = 683 Score = 50.1 bits (25), Expect = 0.014 Identities = 52/61 (85%) Strand = Plus / Plus Query: 203 tccatgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttca 262 ||||||| ||||||||||| |||||| |||| || ||| | ||||||| |||||| |||| Sbjct: 91 tccatgatgactgcaagctaaggttcctggaactgaaggcgaagaggacgcaccgtttca 150 Query: 263 t 263 | Sbjct: 151 t 151
>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA, complete cds Length = 648 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 511 ctggacggcatccagatcgagatgcaggccaccgaccccagcga 554 ||||||||| | |||||||| |||||||||||||| ||||||| Sbjct: 427 ctggacggcgtgcagatcgacgtgcaggccaccgacgccagcga 470
>emb|AM111332.1| Plantago major mRNA for actin-depolymerizing factor (adf2 gene) Length = 732 Score = 44.1 bits (22), Expect = 0.86 Identities = 49/58 (84%) Strand = Plus / Plus Query: 203 tccatgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgctt 260 ||||||| || ||||||||||||||| |||| || ||| |||| |||| |||||||| Sbjct: 108 tccatgatgattgcaagctgaggttcttggaacttaaggccaaaaggactcaccgctt 165
>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence Length = 106286 Score = 44.1 bits (22), Expect = 0.86 Identities = 34/38 (89%) Strand = Plus / Plus Query: 203 tccatgacgactgcaagctgaggttcgtggagctcaag 240 ||||||| ||||||||| ||||||| ||||||||||| Sbjct: 92633 tccatgatgactgcaagttgaggtttatggagctcaag 92670
>gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete sequence Length = 105951 Score = 44.1 bits (22), Expect = 0.86 Identities = 34/38 (89%) Strand = Plus / Plus Query: 203 tccatgacgactgcaagctgaggttcgtggagctcaag 240 ||||||| ||||||||| ||||||| ||||||||||| Sbjct: 24465 tccatgatgactgcaagttgaggtttatggagctcaag 24502
>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066, complete sequence Length = 79585 Score = 44.1 bits (22), Expect = 0.86 Identities = 34/38 (89%) Strand = Plus / Minus Query: 203 tccatgacgactgcaagctgaggttcgtggagctcaag 240 ||||||| ||||||||||| ||||| ||||||||||| Sbjct: 29697 tccatgatgactgcaagctaaggtttatggagctcaag 29660
>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence Length = 144042 Score = 44.1 bits (22), Expect = 0.86 Identities = 46/54 (85%) Strand = Plus / Plus Query: 454 gcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagagg 507 |||| |||||| |||||||||| || ||||||||||| || | |||||||||| Sbjct: 67059 gcaagggtgagaagcaagatgatttatgcaagcaccaaagaaaggttcaagagg 67112
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 0.86 Identities = 25/26 (96%) Strand = Plus / Plus Query: 542 ccgaccccagcgaaatcagcctggac 567 ||||||||||||||||||||| |||| Sbjct: 4866091 ccgaccccagcgaaatcagccgggac 4866116
>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence Length = 180645 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 493 gagaagttcaagaggaccctg 513 ||||||||||||||||||||| Sbjct: 138067 gagaagttcaagaggaccctg 138047
>ref|XM_811053.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510885.10) partial mRNA Length = 2424 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 aggctggagaaccagaaggag 291 ||||||||||||||||||||| Sbjct: 28 aggctggagaaccagaaggag 8 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 138,476,453 Number of extensions: 7209477 Number of successful extensions: 142720 Number of sequences better than 10.0: 48 Number of HSP's gapped: 142704 Number of HSP's successfully gapped: 63 Length of query: 899 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 876 Effective length of database: 18,503,978,556 Effective search space: 16209485215056 Effective search space used: 16209485215056 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)