ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf49p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os11g42960:12011.t03826:unspliced-genomic plant integral... 41 2e-10
2LOC_Os09g27750:12009.t02453:unspliced-genomic 1-aminocyclopr... 37 0.22
3LOC_Os12g40330:12012.t03712:unspliced-genomic expressed protein 34 2.1
4LOC_Os09g27820:12009.t02460:unspliced-genomic 1-aminocyclopr... 33 2.8
5LOC_Os12g22370:12012.t01976:unspliced-genomic retrotransposo... 33 3.9
6LOC_Os01g18110:12001.t01606:unspliced-genomic dihydroflavono... 33 3.9
7LOC_Os12g38450:12012.t03526:unspliced-genomic xyloglucan gal... 29 4.4
8LOC_Os11g15510:12011.t01380:unspliced-genomic conserved hypo... 32 5.3
9LOC_Os09g02410:12009.t00140:unspliced-genomic S-domain recep... 32 7.3
10LOC_Os08g01330:12008.t00033:unspliced-genomic ANAC030, putat... 32 7.3
11LOC_Os08g01324:12008.t04339:unspliced-genomic expressed protein 32 7.3
12LOC_Os12g41490:12012.t03825:unspliced-genomic receptor-like ... 32 7.4
13LOC_Os10g25340:12010.t01955:unspliced-genomic esterase precu... 32 7.4

>LOC_Os11g42960:12011.t03826:unspliced-genomic plant integral membrane protein TIGR01569 containing protein,|
           expressed
          Length = 1314
 Score = 40.9 bits (83), Expect(3) = 2e-10
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3 / +1

                                  
Query: 228 QCTVVLPNGAEAHTVTYSDFGPF 296
           QCT+ L  G   HT+TY DFGPF
Sbjct: 271 QCTIFLYYGGPLHTITYKDFGPF 339



 Score = 39.6 bits (80), Expect(3) = 2e-10
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3 / +3

                                             
Query: 525 TVRGSNNFCSQVHMAMYISLXXXXXXXXXELVKN 626
           T   + NFC+QVH+AMY+SL         E+VK+
Sbjct: 654 TTAAAGNFCNQVHIAMYVSLAAGVALLVAEIVKH 755



 Score = 27.2 bits (53), Expect(3) = 2e-10
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3 / +3

                     
Query: 678 CEHGCHHKH* 707
           C HGCH KH*
Sbjct: 834 CHHGCHSKH* 863



 Score = 40.9 bits (83), Expect(3) = 5e-09
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = -2 / -1

                                     
Query: 302 VHKGAEVAVGDGVCLGAVREDDGALA 225
           VH+GA+V VGDGV   AV E+DGALA
Sbjct: 345 VHEGAKVLVGDGVERAAVVEEDGALA 268



 Score = 34.5 bits (69), Expect(3) = 5e-09
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3 / -3

                                  
Query: 580 EMYMAMCTWLQKLFEPRTVPSQT 512
           E YMAMCTWLQKL     V + T
Sbjct: 709 ETYMAMCTWLQKLPAAAVVQTPT 641



 Score = 27.6 bits (54), Expect(3) = 5e-09
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2 / -2

                                   
Query: 371 LLPYAQENGRPHHDRRQGVRHHQV 300
           LL   QE+G   H+R    RHHQ+
Sbjct: 515 LLADGQEDGDRLHERPDRARHHQI 444



 Score = 37.7 bits (76), Expect(2) = 0.001
 Identities = 17/26 (65%), Positives = 17/26 (65%)
 Frame = -3 / -2

                                     
Query: 301 YTKGPKSL*VTVCASAPFGRTTVHWL 224
           YTKGPKSL*V V    P  R  VHWL
Sbjct: 344 YTKGPKSL*VMVWRGPP**RKMVHWL 267



 Score = 27.6 bits (54), Expect(2) = 0.001
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2 / -2

                       
Query: 578 DVHGHVHLAAEV 543
           DVHG+VHL AEV
Sbjct: 707 DVHGNVHLVAEV 672



 Score = 26.3 bits (51), Expect(3) = 0.30
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1 / +1

                      
Query: 544 TSAARCTWPCT 576
           TSA RCT PCT
Sbjct: 673 TSATRCTLPCT 705



 Score = 24.9 bits (48), Expect(3) = 0.30
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1 / +2

                       
Query: 265 TPSPTATSAPLC 300
           TPSPT T AP C
Sbjct: 308 TPSPTRTLAPSC 343



 Score = 24.0 bits (46), Expect(3) = 0.30
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1 / +1

                            
Query: 658 TPTRTPAASMGATTSIS 708
           TPT  P A+M A  SIS
Sbjct: 814 TPTSQPLATMAAIASIS 864



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>LOC_Os09g27750:12009.t02453:unspliced-genomic 1-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed|
          Length = 1599

 Score = 36.8 bits (74), Expect = 0.22
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -2 / -2

                                                     
Query: 347 GRPHHDRRQGVRHHQVHKGAEVAVGDGVCLGAVREDDGALAG 222
           GR  H     +RHH VH     AVGD + L A  +DDG   G
Sbjct: 974 GRDGHPVAVDLRHHPVHHALVPAVGDHLQLVAEVDDDGVAHG 849



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>LOC_Os12g40330:12012.t03712:unspliced-genomic expressed protein|
          Length = 736

 Score = 33.6 bits (67), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2 / +2

                                              
Query: 335 HDRRQGVRHHQVHKGAEVAVGDGVCLGAVREDDGA 231
           H +  G+R+H VH   E+A GDG   G  R   GA
Sbjct: 29  HKKLVGLRYHGVHGVQELAAGDGEARGRRRGRGGA 133



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>LOC_Os09g27820:12009.t02460:unspliced-genomic 1-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed|
          Length = 1626

 Score = 33.1 bits (66), Expect = 2.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2 / -3

                                                     
Query: 344  RPHHDRRQGVRHHQVHKGAEVAVGDGVCLGAVREDDGALAG 222
            R  H    G+RHH V      AVGD + L A  +DDG   G
Sbjct: 1042 RDGHPVAVGLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHG 920



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>LOC_Os12g22370:12012.t01976:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2568

 Score = 32.7 bits (65), Expect = 3.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2 / +3

                                                
Query: 692 PPQALASYRSSFVPTLFVGRVSYVCNNASYVVYCFNF 802
           PP  + S+    + ++ V  + Y C N +YV++ F+F
Sbjct: 582 PPSCIRSFSPPSIESVKVPVLRYFCKNETYVMWAFHF 692



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>LOC_Os01g18110:12001.t01606:unspliced-genomic dihydroflavonol-4-reductase, putative, expressed|
          Length = 2021

 Score = 32.7 bits (65), Expect = 3.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2 / -1

                                      
Query: 695 PQALASYRSSFVPTLFVGRVSYVCNNA 775
           P + A+  + FVP++ VGR SYV NN+
Sbjct: 989 PMSAAALMTFFVPSIAVGRSSYVRNNS 909



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>LOC_Os12g38450:12012.t03526:unspliced-genomic xyloglucan galactosyltransferase KATAMARI 1, putative, expressed|
          Length = 1748

 Score = 29.5 bits (58), Expect(2) = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1 / -2

                                  
Query: 631  RCPSEAPGRTPTRTPAASMGAT 696
            RC    PGRTP+R    + GAT
Sbjct: 1324 RCARRPPGRTPSRRRGPAAGAT 1259



 Score = 24.0 bits (46), Expect(2) = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1 / -1

                          
Query: 82   SSSPPSGRSCLAMI 123
            SSSPP G  CL ++
Sbjct: 1541 SSSPPGGSPCLILL 1500



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>LOC_Os11g15510:12011.t01380:unspliced-genomic conserved hypothetical protein|
          Length = 1968

 Score = 32.2 bits (64), Expect = 5.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2 / -1

                                            
Query: 122  IIARHDRPDGGEELTRSSQDGKVAFGCSLAWN 27
            ++ RH++PD GEEL  S+Q  +V    +LA N
Sbjct: 1869 VMMRHEQPDEGEELPSSAQLLRVQLYLALAGN 1774



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>LOC_Os09g02410:12009.t00140:unspliced-genomic S-domain receptor-like protein kinase, putative|
          Length = 1676

 Score = 31.8 bits (63), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2 / -1

                                                  
Query: 335  HDRRQGVRHHQVHKGAEVAVGDGVCLGAVREDDGALAG 222
            H      R  +VH G +V+   GV  GA+ +D  A+AG
Sbjct: 1424 HSTAASSRRRRVHTGGDVSTPKGVAGGAIGQD*VAVAG 1311



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>LOC_Os08g01330:12008.t00033:unspliced-genomic ANAC030, putative, expressed|
          Length = 2039

 Score = 31.8 bits (63), Expect = 7.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2 / +2

                                  
Query: 377  ASLLPYAQENGRPHHDRRQGVR 312
            ASLL +   +G PHH RR+G+R
Sbjct: 1328 ASLLRHDAASGEPHHRRRRGLR 1393



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>LOC_Os08g01324:12008.t04339:unspliced-genomic expressed protein|
          Length = 8067

 Score = 31.8 bits (63), Expect = 7.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2 / -2

                                  
Query: 377  ASLLPYAQENGRPHHDRRQGVR 312
            ASLL +   +G PHH RR+G+R
Sbjct: 7718 ASLLRHDAASGEPHHRRRRGLR 7653



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>LOC_Os12g41490:12012.t03825:unspliced-genomic receptor-like protein kinase homolog RK20-1, putative, expressed|
          Length = 2793

 Score = 31.8 bits (63), Expect = 7.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1 / +1

                                     
Query: 631 RCPSEAPGRTPTRTPAASMGATTSIS 708
           RC  EA  RTPT TPA+S   T+  S
Sbjct: 379 RCAREAERRTPTTTPASSATPTSPSS 456



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>LOC_Os10g25340:12010.t01955:unspliced-genomic esterase precursor, putative, expressed|
          Length = 3668

 Score = 31.8 bits (63), Expect = 7.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1 / +2

                                   
Query: 634  CPSEAPGRTPTRTPAASMGATTS 702
            C   AP  T TRTPAA  G+T+S
Sbjct: 2648 CSPRAPPPTTTRTPAAMRGSTSS 2716


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 239,396,662
Number of extensions: 2645433
Number of successful extensions: 13361
Number of sequences better than 10.0: 13
Length of query: 304
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 255
Effective length of database: 52,856,264
Effective search space: 13478347320
Effective search space used: 13478347320
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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