ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf49p03 |
|---|---|
| Clone Library Name | barley_pub |
>Q1RHD0:RPOB_RICBR DNA-directed RNA polymerase beta chain - Rickettsia bellii (strain| RML369-C) Length = 1372 Score = 32.7 bits (73), Expect = 2.1 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI + D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKIYDSIVRGENNFESGI 1348
>P77941:RPOB_RICTY DNA-directed RNA polymerase beta chain - Rickettsia typhi| Length = 1374 Score = 31.6 bits (70), Expect = 4.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGI 1348
>O52271:RPOB_RICPR DNA-directed RNA polymerase beta chain - Rickettsia prowazekii| Length = 1374 Score = 31.6 bits (70), Expect = 4.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGI 1348
>Q9RH43:RPOB_RICMA DNA-directed RNA polymerase beta chain - Rickettsia massiliae| Length = 1373 Score = 31.6 bits (70), Expect = 4.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGI 1348
>Q4UKD4:RPOB_RICFE DNA-directed RNA polymerase beta chain - Rickettsia felis (Rickettsia| azadi) Length = 1373 Score = 31.6 bits (70), Expect = 4.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGI 1348
>Q9RH41:RPOB_RICCN DNA-directed RNA polymerase beta chain - Rickettsia conorii| Length = 1373 Score = 31.6 bits (70), Expect = 4.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNFCSQV 560 GAA+ E ++ S GRI D VRG NNF S + Sbjct: 1311 GAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGI 1348
>Q2GD90:RPOB_NEOSM DNA-directed RNA polymerase beta chain - Neorickettsia sennetsu| (strain Miyayama) Length = 1358 Score = 30.8 bits (68), Expect = 7.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNF 548 GA FA E ++ S GR++V D VRG N+F Sbjct: 1281 GATFALQEMLTIKSDDVVGRVNVYDSIVRGDNDF 1314
>Q93MK9:RPOB_EHRSE DNA-directed RNA polymerase beta chain - Ehrlichia sennetsu| Length = 1357 Score = 30.8 bits (68), Expect = 7.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNF 548 GA FA E ++ S GR++V D VRG N+F Sbjct: 1280 GATFALQEMLTIKSDDVVGRVNVYDSIVRGDNDF 1313
>Q93MK8:RPOB_EHRRI DNA-directed RNA polymerase beta chain - Ehrlichia risticii| Length = 1363 Score = 30.8 bits (68), Expect = 7.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 447 GAAFATSEYMSYCSPHGRGRISVCDGTVRGSNNF 548 GA FA E ++ S GR++V D VRG N+F Sbjct: 1286 GATFALQEMLTIKSDDVVGRVNVYDSIVRGDNDF 1319 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 100,038,065 Number of extensions: 1548911 Number of successful extensions: 3928 Number of sequences better than 10.0: 9 Number of HSP's gapped: 3925 Number of HSP's successfully gapped: 9 Length of query: 304 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 191 Effective length of database: 69,691,104 Effective search space: 13311000864 Effective search space used: 13311000864 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
