ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf49p03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001074909.1| Oryza sativa (japonica cultivar-group) Os11g0649600 (Os11g0649600) mRNA, complete cds Length = 1003 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 392 ggtgctcgtgccgctcctcgacgtggccgcgccggcgctgctctactcgtcgacgggcgc 451 ||||||| ||||||| || |||| |||| ||||| ||||||||||||| |||||| ||| Sbjct: 435 ggtgctcctgccgctgctggacgccgccgtgccggtgctgctctactcggcgacggccgc 494 Query: 452 cgccttcgcc 461 ||| |||||| Sbjct: 495 cgcgttcgcc 504 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 543 aacttctgcagccaggtgcacatggccatgtacatctcgctggccgccg 591 |||||||||| |||||||||||| ||||||||| |||| || ||||||| Sbjct: 571 aacttctgcaaccaggtgcacattgccatgtacgtctccctcgccgccg 619 Score = 48.1 bits (24), Expect = 0.056 Identities = 39/44 (88%) Strand = Plus / Plus Query: 202 cggcggctctcatggtgacggccagccagtgcaccgtcgtcctc 245 ||||||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 245 cggcggcgctcatggcgacggcgagccagtgcaccatcttcctc 288 Score = 48.1 bits (24), Expect = 0.056 Identities = 45/52 (86%) Strand = Plus / Plus Query: 264 cacaccgtcacctacagcgacttcggcccctttgtgtacctggtggtggcga 315 |||||| ||||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 307 cacaccatcacctacaaggactttggccccttcgtgtatttggtggtggcga 358
>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11, complete sequence Length = 199348 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 392 ggtgctcgtgccgctcctcgacgtggccgcgccggcgctgctctactcgtcgacgggcgc 451 ||||||| ||||||| || |||| |||| ||||| ||||||||||||| |||||| ||| Sbjct: 167912 ggtgctcctgccgctgctggacgccgccgtgccggtgctgctctactcggcgacggccgc 167853 Query: 452 cgccttcgcc 461 ||| |||||| Sbjct: 167852 cgcgttcgcc 167843 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 543 aacttctgcagccaggtgcacatggccatgtacatctcgctggccgccg 591 |||||||||| |||||||||||| ||||||||| |||| || ||||||| Sbjct: 167776 aacttctgcaaccaggtgcacattgccatgtacgtctccctcgccgccg 167728 Score = 48.1 bits (24), Expect = 0.056 Identities = 39/44 (88%) Strand = Plus / Minus Query: 202 cggcggctctcatggtgacggccagccagtgcaccgtcgtcctc 245 ||||||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 168203 cggcggcgctcatggcgacggcgagccagtgcaccatcttcctc 168160 Score = 42.1 bits (21), Expect = 3.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 211 tcatggtgacggccagccagtgcaccgtcgtcc 243 |||||| |||||| ||| ||||||||||||||| Sbjct: 170000 tcatggcgacggcgagcgagtgcaccgtcgtcc 169968
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 392 ggtgctcgtgccgctcctcgacgtggccgcgccggcgctgctctactcgtcgacgggcgc 451 ||||||| ||||||| || |||| |||| ||||| ||||||||||||| |||||| ||| Sbjct: 25038864 ggtgctcctgccgctgctggacgccgccgtgccggtgctgctctactcggcgacggccgc 25038805 Query: 452 cgccttcgcc 461 ||| |||||| Sbjct: 25038804 cgcgttcgcc 25038795 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 543 aacttctgcagccaggtgcacatggccatgtacatctcgctggccgccg 591 |||||||||| |||||||||||| ||||||||| |||| || ||||||| Sbjct: 25038728 aacttctgcaaccaggtgcacattgccatgtacgtctccctcgccgccg 25038680 Score = 48.1 bits (24), Expect = 0.056 Identities = 39/44 (88%) Strand = Plus / Minus Query: 202 cggcggctctcatggtgacggccagccagtgcaccgtcgtcctc 245 ||||||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 25039155 cggcggcgctcatggcgacggcgagccagtgcaccatcttcctc 25039112 Score = 42.1 bits (21), Expect = 3.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 211 tcatggtgacggccagccagtgcaccgtcgtcc 243 |||||| |||||| ||| ||||||||||||||| Sbjct: 25040952 tcatggcgacggcgagcgagtgcaccgtcgtcc 25040920
>dbj|AK060103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A09, full insert sequence Length = 1003 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 392 ggtgctcgtgccgctcctcgacgtggccgcgccggcgctgctctactcgtcgacgggcgc 451 ||||||| ||||||| || |||| |||| ||||| ||||||||||||| |||||| ||| Sbjct: 435 ggtgctcctgccgctgctggacgccgccgtgccggtgctgctctactcggcgacggccgc 494 Query: 452 cgccttcgcc 461 ||| |||||| Sbjct: 495 cgcgttcgcc 504 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 543 aacttctgcagccaggtgcacatggccatgtacatctcgctggccgccg 591 |||||||||| |||||||||||| ||||||||| |||| || ||||||| Sbjct: 571 aacttctgcaaccaggtgcacattgccatgtacgtctccctcgccgccg 619 Score = 48.1 bits (24), Expect = 0.056 Identities = 39/44 (88%) Strand = Plus / Plus Query: 202 cggcggctctcatggtgacggccagccagtgcaccgtcgtcctc 245 ||||||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 245 cggcggcgctcatggcgacggcgagccagtgcaccatcttcctc 288 Score = 48.1 bits (24), Expect = 0.056 Identities = 45/52 (86%) Strand = Plus / Plus Query: 264 cacaccgtcacctacagcgacttcggcccctttgtgtacctggtggtggcga 315 |||||| ||||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 307 cacaccatcacctacaaggactttggccccttcgtgtatttggtggtggcga 358
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete sequence Length = 13990 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 420 gcgccggcgctgctctactcgtcgacgggcgc 451 |||| ||||||||||||||||||||||||||| Sbjct: 13256 gcgcaggcgctgctctactcgtcgacgggcgc 13287
>emb|CT830349.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014H15, full insert sequence Length = 666 Score = 48.1 bits (24), Expect = 0.056 Identities = 39/44 (88%) Strand = Plus / Plus Query: 202 cggcggctctcatggtgacggccagccagtgcaccgtcgtcctc 245 ||||||| ||||||| |||||| |||||||||||| || ||||| Sbjct: 241 cggcggcgctcatggcgacggcgagccagtgcaccatcttcctc 284 Score = 48.1 bits (24), Expect = 0.056 Identities = 45/52 (86%) Strand = Plus / Plus Query: 264 cacaccgtcacctacagcgacttcggcccctttgtgtacctggtggtggcga 315 |||||| ||||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 303 cacaccatcacctacaaggactttggccccttcgtgtatttggtggtggcga 354
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 48.1 bits (24), Expect = 0.056 Identities = 30/32 (93%) Strand = Plus / Minus Query: 647 ctccgggtcggactccgactcggacgccggct 678 ||||||||||||| ||||||||||| |||||| Sbjct: 131848 ctccgggtcggaccccgactcggaccccggct 131817 Score = 48.1 bits (24), Expect = 0.056 Identities = 30/32 (93%) Strand = Plus / Plus Query: 647 ctccgggtcggactccgactcggacgccggct 678 ||||||||||||| ||||||||||| |||||| Sbjct: 151455 ctccgggtcggaccccgactcggaccccggct 151486
>ref|NM_001073822.1| Oryza sativa (japonica cultivar-group) Os12g0617900 (Os12g0617900) mRNA, complete cds Length = 3802 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 109 gtcggactccgactcggacgccg 131
>ref|XM_879485.1| PREDICTED: Bos taurus hypothetical protein LOC615270 (LOC615270), mRNA Length = 876 Score = 46.1 bits (23), Expect = 0.22 Identities = 26/27 (96%) Strand = Plus / Plus Query: 498 cgcgggcgcatcagcgtctgcgacggc 524 |||||||||| |||||||||||||||| Sbjct: 442 cgcgggcgcagcagcgtctgcgacggc 468
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 26348980 gtcggactccgactcggacgccg 26348958
>dbj|AK066418.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067H19, full insert sequence Length = 3349 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 383 gtcggactccgactcggacgccg 405
>dbj|AK065064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J19, full insert sequence Length = 3803 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 110 gtcggactccgactcggacgccg 132
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 46.1 bits (23), Expect = 0.22 Identities = 26/27 (96%) Strand = Plus / Minus Query: 323 ggcggcggtcatggtgggggcggccat 349 ||||||||||||||||| ||||||||| Sbjct: 1740516 ggcggcggtcatggtggtggcggccat 1740490
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 112964 gtcggactccgactcggacgccg 112942
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 653 gtcggactccgactcggacgccg 675 ||||||||||||||||||||||| Sbjct: 63253 gtcggactccgactcggacgccg 63231
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 44.1 bits (22), Expect = 0.87 Identities = 25/26 (96%) Strand = Plus / Plus Query: 588 gccgccggcgccgtgtcggccgccga 613 ||||||||||| |||||||||||||| Sbjct: 4967659 gccgccggcgcggtgtcggccgccga 4967684
>ref|NM_001061939.1| Oryza sativa (japonica cultivar-group) Os05g0382200 (Os05g0382200) mRNA, complete cds Length = 1362 Score = 44.1 bits (22), Expect = 0.87 Identities = 31/34 (91%) Strand = Plus / Plus Query: 396 ctcgtgccgctcctcgacgtggccgcgccggcgc 429 |||||||||||||||||||| |||| ||||||| Sbjct: 412 ctcgtgccgctcctcgacgtcgccgtcccggcgc 445
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 44.1 bits (22), Expect = 0.87 Identities = 25/26 (96%) Strand = Plus / Plus Query: 407 cctcgacgtggccgcgccggcgctgc 432 ||||||||| |||||||||||||||| Sbjct: 1650286 cctcgacgtcgccgcgccggcgctgc 1650311
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 44.1 bits (22), Expect = 0.87 Identities = 31/34 (91%) Strand = Plus / Minus Query: 396 ctcgtgccgctcctcgacgtggccgcgccggcgc 429 |||||||||||||||||||| |||| ||||||| Sbjct: 125528 ctcgtgccgctcctcgacgtcgccgtcccggcgc 125495
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 0.87 Identities = 31/34 (91%) Strand = Plus / Minus Query: 396 ctcgtgccgctcctcgacgtggccgcgccggcgc 429 |||||||||||||||||||| |||| ||||||| Sbjct: 18332316 ctcgtgccgctcctcgacgtcgccgtcccggcgc 18332283
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Minus Query: 580 cgctggccgccgccggcgccgt 601 |||||||||||||||||||||| Sbjct: 2992113 cgctggccgccgccggcgccgt 2992092 Score = 42.1 bits (21), Expect = 3.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 163 tcgccgcacgcgtcgccgccatggcgctcgcggtggcgtcggcgg 207 ||||||| |||| ||||||| ||||||||| |||||||||||| Sbjct: 1878333 tcgccgcgcgcggcgccgccgacgcgctcgcgctggcgtcggcgg 1878377 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 tgctcgtgccgctcctcgacg 414 ||||||||||||||||||||| Sbjct: 4106997 tgctcgtgccgctcctcgacg 4106977
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Minus Query: 599 cgtgtcggccgccgagctggtg 620 |||||||||||||||||||||| Sbjct: 1478486 cgtgtcggccgccgagctggtg 1478465
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 acgcggtcaacatcgccgcacg 172 |||||||||||||||||||||| Sbjct: 968756 acgcggtcaacatcgccgcacg 968777
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cgccgccatggcgctcgcggtggcg 200 |||||||||| |||||||||||||| Sbjct: 4898758 cgccgccatgccgctcgcggtggcg 4898782
>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete genome Length = 2998664 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 cgctggccgccgccggcgccg 600 ||||||||||||||||||||| Sbjct: 1462506 cgctggccgccgccggcgccg 1462486
>emb|CT833247.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence Length = 1947 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 1315 ccgcacgcgtcgccgccatgg 1295
>emb|CT833246.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence Length = 1883 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 1314 ccgcacgcgtcgccgccatgg 1294
>ref|NM_006312.3| Homo sapiens nuclear receptor co-repressor 2 (NCOR2), transcript variant 1, mRNA Length = 8826 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2232 ctcgctggccgccgccggcgc 2212
>ref|NM_001077261.1| Homo sapiens nuclear receptor co-repressor 2 (NCOR2), transcript variant 2, mRNA Length = 8550 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2232 ctcgctggccgccgccggcgc 2212
>ref|XM_001229883.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_03368) mRNA, complete cds Length = 2232 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 gcgtcgccgccatggcgctcg 192 ||||||||||||||||||||| Sbjct: 1937 gcgtcgccgccatggcgctcg 1957
>ref|XM_001226076.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_10810) mRNA, complete cds Length = 1470 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 gtggcgaacgccttggcggcg 329 ||||||||||||||||||||| Sbjct: 1253 gtggcgaacgccttggcggcg 1233
>ref|NM_001074910.1| Oryza sativa (japonica cultivar-group) Os11g0649700 (Os11g0649700) mRNA, complete cds Length = 866 Score = 42.1 bits (21), Expect = 3.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 211 tcatggtgacggccagccagtgcaccgtcgtcc 243 |||||| |||||| ||| ||||||||||||||| Sbjct: 203 tcatggcgacggcgagcgagtgcaccgtcgtcc 235
>ref|NM_001071988.1| Oryza sativa (japonica cultivar-group) Os10g0571600 (Os10g0571600) mRNA, partial cds Length = 1104 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 523 ccgcacgcgtcgccgccatgg 503
>ref|XR_022765.1| PREDICTED: Pan troglodytes similar to nuclear receptor co-repressor 2 (NCOR2), mRNA Length = 8750 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2188 ctcgctggccgccgccggcgc 2168
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 cgacgtggccgcgccggcgct 430 ||||||||||||||||||||| Sbjct: 3720829 cgacgtggccgcgccggcgct 3720849
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 gcgccgccttcgccaccagcg 468 ||||||||||||||||||||| Sbjct: 5355017 gcgccgccttcgccaccagcg 5355037
>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence Length = 2788459 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 580 cgctggccgccgccggcgccg 600 ||||||||||||||||||||| Sbjct: 1018622 cgctggccgccgccggcgccg 1018642
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 acgcgtcgccgccatggcgctcgcg 194 |||||||||||||||| |||||||| Sbjct: 1675838 acgcgtcgccgccatgccgctcgcg 1675862
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 acgcgtcgccgccatggcgctcgcg 194 |||||||||||||||| |||||||| Sbjct: 2921237 acgcgtcgccgccatgccgctcgcg 2921261
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2701607 ctcgctggccgccgccggcgc 2701627
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 588 gccgccggcgccgtgtcggccgccg 612 |||||||||| |||||||||||||| Sbjct: 2813230 gccgccggcggcgtgtcggccgccg 2813254 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgccgccatggcgctcgcggtggcg 200 |||||||||| |||||||||||||| Sbjct: 4521707 cgccgccatgccgctcgcggtggcg 4521683
>gb|AE006009.1| Caulobacter crescentus CB15 section 335 of 359 of the complete genome Length = 12052 Score = 42.1 bits (21), Expect = 3.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 582 ctggccgccgccggcgccgtgtcggccgccgag 614 ||||||| |||||||||||| | |||||||||| Sbjct: 5373 ctggccggcgccggcgccgtctgggccgccgag 5405
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence Length = 187707 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 156203 ccgcacgcgtcgccgccatgg 156183
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 22151259 ccgcacgcgtcgccgccatgg 22151239
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 645 ggctccgggtcggactccgac 665 ||||||||||||||||||||| Sbjct: 8847281 ggctccgggtcggactccgac 8847261
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 gcggtggcgtcggcggctctcatgg 216 ||||||||||||||||||| ||||| Sbjct: 3394585 gcggtggcgtcggcggctcacatgg 3394609
>dbj|AB209089.1| Homo sapiens mRNA for nuclear receptor co-repressor 2 variant protein Length = 4686 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2408 ctcgctggccgccgccggcgc 2388
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 654 tcggactccgactcggacgccggct 678 |||||||||| |||||||||||||| Sbjct: 7315074 tcggactccgcctcggacgccggct 7315050
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 acgcgtcgccgccatggcgctcgcg 194 |||||||||||||||| |||||||| Sbjct: 2651239 acgcgtcgccgccatgccgctcgcg 2651263
>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12 Length = 333050 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 tggtggtggcgaacgccttgg 324 ||||||||||||||||||||| Sbjct: 96363 tggtggtggcgaacgccttgg 96383
>emb|AJ784940.1| Streptomyces fradiae sfp2 gene for serine protease 2 precursor Length = 1538 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 598 ccgtgtcggccgccgagctgg 618 ||||||||||||||||||||| Sbjct: 280 ccgtgtcggccgccgagctgg 300
>gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205283 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 93587 ctcgctggccgccgccggcgc 93607
>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0458G06 Length = 139109 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 645 ggctccgggtcggactccgac 665 ||||||||||||||||||||| Sbjct: 77381 ggctccgggtcggactccgac 77361
>gb|AY965853.1| Homo sapiens SMRTE-tau mRNA, complete cds, alternatively spliced Length = 8548 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2229 ctcgctggccgccgccggcgc 2209
>dbj|AK110684.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H07, full insert sequence Length = 1104 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ccgcacgcgtcgccgccatgg 186 ||||||||||||||||||||| Sbjct: 523 ccgcacgcgtcgccgccatgg 503
>dbj|AK059842.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D11, full insert sequence Length = 866 Score = 42.1 bits (21), Expect = 3.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 211 tcatggtgacggccagccagtgcaccgtcgtcc 243 |||||| |||||| ||| ||||||||||||||| Sbjct: 203 tcatggcgacggcgagcgagtgcaccgtcgtcc 235
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 cgctggccgccgccggcgccg 600 ||||||||||||||||||||| Sbjct: 3169583 cgctggccgccgccggcgccg 3169563 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgccgccatggcgctcgcggtggcg 200 |||||||||| |||||||||||||| Sbjct: 4334507 cgccgccatgccgctcgcggtggcg 4334483
>gb|AF125672.1|AF125672 Homo sapiens silencing mediator of retinoic acid and thyroid hormone receptor extended isoform (SMRTE) mRNA, complete cds Length = 8686 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2229 ctcgctggccgccgccggcgc 2209
>gb|AF113003.1|AF113003 Homo sapiens silencing mediator of retinoic acid and thyroid hormone receptor alpha mRNA, complete cds Length = 8561 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ctcgctggccgccgccggcgc 598 ||||||||||||||||||||| Sbjct: 2077 ctcgctggccgccgccggcgc 2057
>emb|Z69903.1|CEF46F2 Caenorhabditis elegans Cosmid F46F2, complete sequence Length = 37248 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 589 ccgccggcgccgtgtcggccgccga 613 |||||||||||| |||||||||||| Sbjct: 33890 ccgccggcgccgcgtcggccgccga 33914
>emb|AL773580.11| Mouse DNA sequence from clone RP23-26G3 on chromosome X, complete sequence Length = 210533 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ggaagaagggaagcaacaagg 384 ||||||||||||||||||||| Sbjct: 106430 ggaagaagggaagcaacaagg 106450 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 121,359,150 Number of extensions: 6734420 Number of successful extensions: 223041 Number of sequences better than 10.0: 61 Number of HSP's gapped: 223041 Number of HSP's successfully gapped: 79 Length of query: 912 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 889 Effective length of database: 18,503,978,556 Effective search space: 16450036936284 Effective search space used: 16450036936284 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
