ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf49j06 |
|---|---|
| Clone Library Name | barley_pub |
>Q8VHK1:CSKI2_MOUSE Caskin-2 - Mus musculus (Mouse)| Length = 1201 Score = 34.3 bits (77), Expect = 0.93 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -3 Query: 366 ASRVGNPPAPARQTSTLLGSSRNPSGNDCPGPKRSAAG 253 A R G PP P ++ S++ GS+ PS + GPK A G Sbjct: 860 ARRKGPPPPPPKRLSSVSGSTEPPSLDGTSGPKEGATG 897
>Q21WP7:Y2081_RHOFD Maf-like protein Rfer_2081 - Rhodoferax ferrireducens (strain DSM| 15236 / ATCC BAA-621 / T118) Length = 200 Score = 32.7 bits (73), Expect = 2.7 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Frame = -3 Query: 417 NETGGAELSTVKLVLKDAS-----RVGNPPAPARQTSTLLGSSRNPSGNDCPGPKRSAAG 253 NE A + V + DA+ R G P AP + T + R G P A Sbjct: 45 NEAPAAYVKRVTQLKLDAALQRLKRRGLPAAPVLCSDTTVALGRKIFGK--PTDAADATR 102 Query: 252 MMMDVFVATHRLSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARAAILQPMVSLGMFA 73 M+ ++ THR+ VAL T + + + T + + AA +P+ G +A Sbjct: 103 MLKELSNTTHRVLTAVALGTARKREQVLCESRVTFSAMSSRQIQTYAASGEPLGKAGAYA 162
>Q80VW5:WHRN_MOUSE Whirlin - Mus musculus (Mouse)| Length = 906 Score = 32.0 bits (71), Expect = 4.6 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Frame = -3 Query: 501 GTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTVKLVLKDASRVGNPPAP---AR 331 GT+ V S R L G ++ +TN + VK +D + PP P A+ Sbjct: 534 GTSTTVSSA--RNTLDLEGTGETTQGSTNALPDVSVDDVKSPSEDLPGIKPPPPPPPLAQ 591 Query: 330 QTSTLLGSSRNPSGNDCPGPKRSAA 256 LLG R P G + P P SAA Sbjct: 592 GHDRLLGQPRKP-GREDPAPLSSAA 615
>Q8WXE0:CSKI2_HUMAN Caskin-2 - Homo sapiens (Human)| Length = 1202 Score = 32.0 bits (71), Expect = 4.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 366 ASRVGNPPAPARQTSTLLGSSRNPSGND-CPGPKRSAAG 253 A R G PP P ++ S++ G S P D PGPK A G Sbjct: 863 ARRKGPPPPPPKRLSSVSGPSPEPPPLDGSPGPKEGATG 901
>Q6PB70:TM16H_MOUSE Transmembrane protein 16H - Mus musculus (Mouse)| Length = 1061 Score = 31.6 bits (70), Expect = 6.0 Identities = 34/117 (29%), Positives = 44/117 (37%) Frame = -3 Query: 624 RRPGAAVPLGVMVTLRPTFGDSGAYDLTVPISTAARPSVALGTAPVVESLEPRRPKGLLS 445 RRPGA +P G ++ L+ +P+ T RP G AP PR P Sbjct: 951 RRPGALLPPGPVLRLKQI----------IPLQT--RPPAPTGCAP-----PPRSPADTRL 993 Query: 444 VGNLSRRTTNETGGAELSTVKLVLKDASRVGNPPAPARQTSTLLGSSRNPSGNDCPG 274 LS R LK R +PP P + + S+R PS N PG Sbjct: 994 PAFLSLR---------------FLKAPERGPSPPRPGKLFAF---SAREPSANGAPG 1032
>Q1DS65:STU1_COCIM Protein STU1 - Coccidioides immitis| Length = 1156 Score = 31.6 bits (70), Expect = 6.0 Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 3/181 (1%) Frame = -3 Query: 579 RPTFGDSGAYDLTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGA 400 RPT G + VP S +L +AP+ + PRRP+ L R T + + Sbjct: 634 RPT----GTSTIRVPTGEKLSQSASLSSAPMRPASRPRRPE-------LVRPATADPYSS 682 Query: 399 ELSTVKLVLKDASRVGNPPAPARQTSTLLGSSRNPSGNDCPGPKR---SAAGMMMDVFVA 229 S AS + P ++ SRNP PK +AA + D A Sbjct: 683 RRSAAPTAQSKASSPSDSPQKSKSKLMTTPRSRNPLAR----PKSRMDNAANVTNDKQRA 738 Query: 228 THRLSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARAAILQPMVSLGMFAGCSLSAYV 49 ++ ++ G + ++ RAR AIL P + G F+ S + Sbjct: 739 DPAATLAPKMR----------RRGPSEPDVVSAAARARIAILSPSRTEGDFSVASSQVKI 788 Query: 48 D 46 D Sbjct: 789 D 789
>Q63661:MUC4_RAT Mucin-4 precursor - Rattus norvegicus (Rat)| Length = 2344 Score = 31.6 bits (70), Expect = 6.0 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Frame = -3 Query: 543 TVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAEL-----STVKL 379 T + T+++P T +L L S N +T A + S+V Sbjct: 1015 TGSMGTSSKPQATTPTEVTTSTLSSFSRGSLFSARNCCLQTKKPPLPAVVCLPDPSSVPS 1074 Query: 378 VLKDASRVGNPPAPARQTSTLLGSSRNPSGNDCPGPKRSAAGMMMDVFVATHRLSVVVAL 199 ++ + P TSTL SR + + S++G + ++ R V Sbjct: 1075 LMHSSKPQATTPTEVT-TSTLSSFSRGSTQTQTVSWETSSSGKITAPSTSSRRTPSVATS 1133 Query: 198 KTGKLWDSTSAAAGATMIVAAHSSTRARAA 109 DSTS AG T++ +HS +R A Sbjct: 1134 DIFTTTDSTSGNAGHTLLTGSHSVITSRVA 1163
>P51610:HCFC1_HUMAN Host cell factor - Homo sapiens (Human)| Length = 2035 Score = 31.6 bits (70), Expect = 6.0 Identities = 52/221 (23%), Positives = 73/221 (33%), Gaps = 44/221 (19%) Frame = -3 Query: 627 ARRPGAAVPLGVMVT--------LRPTFGDSGAYDLTVPISTAA--RPSVALGT---APV 487 AR PG P V + P+ D A + +STAA R SV G APV Sbjct: 1198 AREPGGRSPAFVQLAPLSSKVRLSSPSIKDLPAGRHSHAVSTAAMTRSSVGAGEPRMAPV 1257 Query: 486 VESLEPRRPKGLLSVGNLSRRT----------------TNETGGAELSTVKLVLKDASRV 355 ESL+ P ++V L T+ETG +T Sbjct: 1258 CESLQGGSPSTTVTVTALEALLCPSATVTQVCSNPPCETHETGTTNTATTSNAGSAQRVC 1317 Query: 354 GNPPAPARQTSTL---------------LGSSRNPSGNDCPGPKRSAAGMMMDVFVATHR 220 NPP +T T G + P+G C + ++ G M V V Sbjct: 1318 SNPPCETHETGTTHTATTATSNGGTGQPEGGQQPPAGRPCETHQTTSTGTTMSVSVG--- 1374 Query: 219 LSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARAAILQP 97 AL + +G + A + +A A+L P Sbjct: 1375 -----ALLPDATSSHRTVESGLEVAAAPSVTPQAGTALLAP 1410
>Q8VHF5:CISY_RAT Citrate synthase, mitochondrial precursor - Rattus norvegicus (Rat)| Length = 466 Score = 31.6 bits (70), Expect = 6.0 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 239 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 388 TS++ P + G S PE LLPK W G +PT E S+ + Sbjct: 82 TSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQMPTEEQVSWLSQEW 141 Query: 389 VESSAPPVSFVVLLDRFPTLNNPL 460 + +A P V +LD FPT +P+ Sbjct: 142 AKRAALPSHVVTMLDNFPTNLHPM 165
>Q29RK1:CISY_BOVIN Citrate synthase, mitochondrial precursor - Bos taurus (Bovine)| Length = 466 Score = 31.6 bits (70), Expect = 6.0 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 239 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 388 TS++ P + G S PE LLPK W G +PT E S+ + Sbjct: 82 TSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSQEW 141 Query: 389 VESSAPPVSFVVLLDRFPTLNNPL 460 + +A P V +LD FPT +P+ Sbjct: 142 AKRAALPSHVVTMLDNFPTNLHPM 165
>Q18J39:PROA_HALWD Gamma-glutamyl phosphate reductase - Haloquadratum walsbyi (strain| DSM 16790) Length = 456 Score = 31.2 bits (69), Expect = 7.9 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Frame = -3 Query: 603 PLGVMVTLRPTFGDSGAYDLTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRR 424 PLG +T R D Y +TVPI +GT V ES RP L+ + LS + Sbjct: 103 PLGETLTARELDDDLNLYKVTVPIG-------VIGT--VFES----RPDALVQISALSLK 149 Query: 423 TTNET---GGAELSTVKLVLKDASRVGNPPAPA 334 + N GG+E VL + P P+ Sbjct: 150 SGNAVILKGGSEAERSNRVLYNCILEATPEVPS 182
>Q7ZVY5:CISY_DANRE Citrate synthase, mitochondrial precursor - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 468 Score = 31.2 bits (69), Expect = 7.9 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 239 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 388 TS++ P + G S PE LLPK W G +PT E S+ + Sbjct: 84 TSVLDPDEGIRFRGYSIPECQQLLPKAPGGEEPLPEGLFWLLVTGQVPTEEQVSWLSKEW 143 Query: 389 VESSAPPVSFVVLLDRFPTLNNPL 460 + +A P V +LD FPT +P+ Sbjct: 144 AKRAALPSHVVTMLDNFPTNLHPM 167
>P98203:ARVC_MOUSE Armadillo repeat protein deleted in velo-cardio-facial syndrome| homolog - Mus musculus (Mouse) Length = 962 Score = 31.2 bits (69), Expect = 7.9 Identities = 22/87 (25%), Positives = 35/87 (40%) Frame = -3 Query: 573 TFGDSGAYDLTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAEL 394 T G D T+P+ + T V+ ++ P G +V RRT + Sbjct: 862 TPSSGGFDDSTLPLVDKSLDGEKSNTRDVIP-MDTLGPDGYATVDRRERRTLGSDSTGDT 920 Query: 393 STVKLVLKDASRVGNPPAPARQTSTLL 313 S +L+ D R PP P+R + L+ Sbjct: 921 SEKELLRPDPGRKAPPPGPSRPSVRLV 947 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 157,051,793 Number of extensions: 3149991 Number of successful extensions: 11702 Number of sequences better than 10.0: 13 Number of HSP's gapped: 11619 Number of HSP's successfully gapped: 13 Length of query: 363 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 249 Effective length of database: 69,416,809 Effective search space: 17284785441 Effective search space used: 17284785441 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
