>LOC_Os02g14000:12002.t01196:unspliced-genomic actin-related protein 2/3 complex subunit 3, putative, expressed|
Length = 2433
Score = 152 bits (326), Expect(3) = 3e-84
Identities = 61/95 (64%), Positives = 72/95 (75%)
Frame = +1 / +1
Query: 484 SLRFR*GGYN**SDNFLPCKCFLQKLPCQKPSRQIAHLSDILHQYCLEKTRNLPDAGCRN 663
S +R G + **S+ LP KC LQKL C+KPSRQ+ LSDILHQYC EK LP+ GC +
Sbjct: 802 SCYYRQG*HC**SNYILPSKCLLQKLQCEKPSRQVTDLSDILHQYCPEKAGRLPNTGCWD 981
Query: 664 QGNH*PGIGESSCSWRTRISFPWTFHSPPISGGSR 768
+GNH* G GESSC+W TR+S PW+FHS PISGGSR
Sbjct: 982 KGNH*SGFGESSCAWGTRVSLPWSFHSTPISGGSR 1086
Score = 123 bits (264), Expect(3) = 3e-84
Identities = 49/54 (90%), Positives = 53/54 (98%)
Frame = +2 / +2
Query: 761 EAELLRNYLKQIREETSGRLLNCAYRANGTPNKWWLAFAKRKFMNVVIL*SVSI 922
++ELLRNYLKQIREETSGRLLNCAYRANGTPNKWWLAFAKRKFMN+VIL*S+ I
Sbjct: 1889 DSELLRNYLKQIREETSGRLLNCAYRANGTPNKWWLAFAKRKFMNIVIL*SIGI 2050
Score = 84.5 bits (178), Expect(3) = 3e-84
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +2 / +1
Query: 374 SFIAMVYHSSFIDDDGITKACGCPLLPLKTHIKGPAPASD 493
S VYHSSF+DD GITKACGCPLLPLKTHI+GPAPA D
Sbjct: 589 STCGQVYHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFD 708
Score = 144 bits (310), Expect(3) = 1e-67
Identities = 59/90 (65%), Positives = 71/90 (78%)
Frame = -3 / -3
Query: 766 CFLLRLGESEKSRERKSWFSRNRNFLQSQVNDCLGSDSQRPAGF*SFQGNIDVRCQIDEQ 587
CFLLRLG SEK+RE K WF R+RNFLQ+Q+NDCL +SQ A F FQGNIDV+CQID+
Sbjct: 1084 CFLLRLG*SEKTREGKPWFPRHRNFLQTQINDCLCPNSQCSATFQPFQGNIDVKCQIDQ* 905
Query: 586 FVCWAFDMEVFEENICTEESYRFINYIRLI 497
VCWAF +EVFEE+IC+EE FIN + L+
Sbjct: 904 LVCWAFHIEVFEEDICSEECNCFINNVSLV 815
Score = 101 bits (215), Expect(3) = 1e-67
Identities = 39/50 (78%), Positives = 42/50 (84%)
Frame = -3 / -3
Query: 916 YALKDDNVHELPLCKSQPPFVWSAISSVSAVEQPPACFLPYLLQIVPQQF 767
Y K+DNVHE PLCKSQPPFVWS ISSV AV+QP CFLPYLLQI+PQ F
Sbjct: 2044 YTSKNDNVHEFPLCKSQPPFVWSTISSVCAVKQPSTCFLPYLLQIIPQ*F 1895
Score = 58.8 bits (122), Expect(3) = 1e-67
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -2 / -3
Query: 500 YLNLRLGLGPLYEFLVEAKDTHRLL*SRHHQ*N*SDKP 387
YL+ L LGPLYEFLVEAKD+ L *SR HQ +*SDKP
Sbjct: 715 YLDRMLALGPLYEFLVEAKDSRMLW*SRCHQQS*SDKP 602
Score = 144 bits (310), Expect(3) = 4e-64
Identities = 62/67 (92%), Positives = 65/67 (97%)
Frame = +2 / +2
Query: 494 SDKADIIDEAITFFRANVFFKNFHVKSPADKLLIYLTSYINIALKRLETCRTLAVGTKAI 673
+DKADI+DEAITFFRANVFFKNF+VKSPADKLLIYLT YINIALKRLE CRTLAVGTKAI
Sbjct: 812 TDKADIVDEAITFFRANVFFKNFNVKSPADKLLIYLTFYINIALKRLEGCRTLAVGTKAI 991
Query: 674 INLGLEK 694
INLGLEK
Sbjct: 992 INLGLEK 1012
Score = 100 bits (213), Expect(3) = 4e-64
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 754 SGGSRTVEELSEADKGGNKREAAQLRLQS*WHSKQMVVGFCKEEVHERCHPLERKH 921
S G RT+EELSEADKGGNK + A LR+QS*W+SKQMVVGFCKEE+HE CH L+ ++
Sbjct: 1882 SVGFRTIEELSEADKGGNKWKVA*LRIQS*WYSKQMVVGFCKEEIHEHCHSLKYRY 2049
Score = 47.8 bits (98), Expect(3) = 4e-64
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 418 RDHKSLWVSFASTKNSYKGPSPSLRFR 498
RD++S+ +SFASTKNSYKGPS S+R R
Sbjct: 633 RDYQSMRLSFASTKNSYKGPSASIRSR 713
Score = 117 bits (250), Expect(3) = 3e-52
Identities = 59/91 (64%), Positives = 62/91 (68%)
Frame = -2 / -2
Query: 767 LLPPEIGGE*KVQGKEILVLQEQELSPIPG**LPWFRQPASGRFLVFSRQY*CKMSDR*A 588
LLPPEIG E*K QG+E LV Q QELSP P **LP +QP G FS QY*CKMSDR
Sbjct: 1085 LLPPEIGVE*KDQGRETLVPQAQELSPNPD**LPLSQQPVFGNLPAFSGQY*CKMSDRSV 906
Query: 587 ICLLGF*HGSF*RKHLHGRKLSLHQLYPPYL 495
CLLGF H SF*R+HL GR LHQ P L
Sbjct: 905 TCLLGFSH*SF*RRHLLGRM*LLHQQCQPCL 813
Score = 81.7 bits (172), Expect(3) = 3e-52
Identities = 40/52 (76%), Positives = 41/52 (78%)
Frame = -2 / -2
Query: 908 KG*QRS*TSSLQKPTTICLECH*LCKRS*AASRLFPPLSASDSSSTVLLPPE 753
K *Q S* SSLQKPTTICLE H*LC RS*A LFPPLSASD+SS VL P E
Sbjct: 2036 KE*QCS*ISSLQKPTTICLEYH*LCMRS*ATFHLFPPLSASDNSSIVLNPTE 1881
Score = 54.2 bits (112), Expect(3) = 3e-52
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3 / -1
Query: 484 WGWALYMSF*WKQRTPTGFCDPVIINETRVIN 389
W WA YMSF*WKQRT F +P +IN+ RVIN
Sbjct: 699 WRWAPYMSF*WKQRTAACFGNPGVINKARVIN 604
Score = 114 bits (244), Expect(3) = 4e-47
Identities = 59/85 (69%), Positives = 61/85 (71%)
Frame = +3 / +3
Query: 513 LMKR*LSSVQMFSSKTSMSKAQQTNCSSI*HLTSILP*KD*KPAGRWLSEPRQSLTWDWR 692
LMK+ SS QM SSKTSM KAQQT+ SI*H TSILP*K K A WL RQSL W WR
Sbjct: 831 LMKQLHSSEQMSSSKTSM*KAQQTSY*SI*HFTSILP*KGWKVAEHWLLGQRQSLIWVWR 1010
Query: 693 KFLFLENQDFLSLDFSLSPNLRRKQ 767
KFL L NQ F SL FSL PNLRRKQ
Sbjct: 1011 KFLCLGNQGFPSLVFSLYPNLRRKQ 1085
Score = 85.8 bits (181), Expect(3) = 4e-47
Identities = 40/53 (75%), Positives = 42/53 (79%)
Frame = +3 / +3
Query: 765 QNC*GTI*SR*GRKQAGGCSTALTELMALQTNGGWLLQRGSS*TLSSFRA*AY 923
QN *G I*SR*GRKQ GC TA TELM LQTNGGWLLQRG+S*TLS F * +
Sbjct: 1893 QNY*GII*SR*GRKQVEGCLTAHTELMVLQTNGGWLLQRGNS*TLSFFEV*VF 2051
Score = 35.4 bits (71), Expect(3) = 4e-47
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = +3 / +2
Query: 390 FITLVSLMMTGSQKPVGVLCFH*KL 464
FITL LM G K VLCFH*KL
Sbjct: 605 FITLALLMTPGLPKHAAVLCFH*KL 679
Score = 114 bits (244), Expect(4) = 5e-42
Identities = 57/80 (71%), Positives = 60/80 (75%)
Frame = -1 / -1
Query: 765 ASS*DWGRVXXXXXXXXXXXXXXTFSNPRLMIALVPTASVRQVSSLFKAILM*DVR*MSN 586
ASS*DWGRV TFS PRLMIA VPTASVRQ SSLF+AILM*+VR*+SN
Sbjct: 1083 ASS*DWGRVKRPGKGNPGSPGTGTFSKPRLMIAFVPTASVRQPSSLFRAILM*NVR*ISN 904
Query: 585 LSAGLLTWKFLKKTFARKKV 526
LSAGL T KFLKKTFARK V
Sbjct: 903 LSAGLFTLKFLKKTFARKNV 844
Score = 49.2 bits (101), Expect(4) = 5e-42
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = -1 / -2
Query: 474 PFI*VFSGSKGHPQAFVIPSSSMKLE**TMAMKDRR 367
P I*VFSGSKG P A VIP SS KLE**T +++
Sbjct: 689 PLI*VFSGSKGQPHALVIPVSSTKLE**TCPQVEKK 582
Score = 47.8 bits (98), Expect(4) = 5e-42
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -1 / -1
Query: 906 RMTTFMNFLFAKANHHLFG 850
RMT FMNFLFAKANHHLFG
Sbjct: 2034 RMTMFMNFLFAKANHHLFG 1978
Score = 27.2 bits (53), Expect(4) = 5e-42
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1 / -1
Query: 795 ICFR*FLNSSASS 757
ICFR*FLNSS S+
Sbjct: 1923 ICFR*FLNSSESN 1885
>LOC_Os03g08320:12003.t00690:unspliced-genomic pnFL-2, putative, expressed|
Length = 1374
Score = 26.3 bits (51), Expect(2) = 8.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1 / -2
Query: 697 SCSWRTRISFPWTFHSPPISGGSRTVEELSEADKGGN 807
S + R R+ F W+ +PP S +R ++ S G+
Sbjct: 962 SSAHRLRVGFTWSHDAPPSSFLARLLDSASFFSDSGS 852
Score = 22.6 bits (43), Expect(2) = 8.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2 / -3
Query: 848 TPNKWWLAFAKRKFMNVVIL*SVSISAT 931
TP+ W KR+ ++ ++ *SV I ++
Sbjct: 799 TPSSRWACLQKRRHVSWLVR*SVWIGSS 716
>LOC_Os01g35390:12001.t03092:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
Length = 3733
Score = 29.5 bits (58), Expect(2) = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1 / +3
Query: 231 EEGWLALNSFLGSWLMPPVGRQQFRLAVNDWG 136
E GW + + + G ++PPVG Q L + G
Sbjct: 3252 ENGWNSCHQYFGLCVLPPVGPQASHLFSSSMG 3347
Score = 24.4 bits (47), Expect(2) = 9.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3 / +1
Query: 1096 KMKDSFSEGHDNSRYIARNCF 1034
K+ +S H NS ++A++CF
Sbjct: 1951 KIMNSQCPHHPNSNHVAKDCF 2013
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 418,225,434
Number of extensions: 6574438
Number of successful extensions: 22111
Number of sequences better than 10.0: 19
Length of query: 372
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 322
Effective length of database: 52,799,986
Effective search space: 17001595492
Effective search space used: 17001595492
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)