ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51m10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107372.1| Zea mays PCO123698 mRNA sequence Length = 947 Score = 507 bits (256), Expect = e-140 Identities = 457/524 (87%) Strand = Plus / Plus Query: 388 ggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtccttt 447 |||||| |||||||||||| ||||||||| |||||||||||||| || | |||||||| Sbjct: 126 ggtttaccactctagtttcgctgatgatgatgggatcacaaaagcttgcagctgtccttt 185 Query: 448 gcttccactaaaaactcatataaagggcccagccccagcctcagattcagataaggcgga 507 ||||||||| ||||||||||| |||||||| || | |||||| || | ||||| ||||| Sbjct: 186 gcttccactgaaaactcatatcaagggcccggcacgagcctctgaccctgataaagcgga 245 Query: 508 tataattgatgaagcgataactttcttccgtgcaaatgttttcttcaaaaacttccatgt 567 || |||||||||| ||||||||||| || || ||||||||||||||||| |||||||| Sbjct: 246 cattgttgatgaagccataactttctttcgagccaatgttttcttcaaaaatttccatgt 305 Query: 568 caaaagcccagcagacaaattgctcatctatctgacatcttacatcaatattgccttgaa 627 ||| || |||||||||| || | ||||||||||| | ||| |||||||||||||| || Sbjct: 306 gaaatgctcagcagacaagttattgatctatctgacgttttatatcaatattgccttaaa 365 Query: 628 aagactagaaacctgccggacgctggctgtcggaaccaaggcaatcattaacctgggatt 687 |||||||||| |||||||| || ||||| || || || ||||||||||| |||||||| Sbjct: 366 aagactagaaggttgccggacactagctgttgggactaaagcaatcattaatctgggatt 425 Query: 688 ggagaaagttcctgttcctggagaaccaggatttcctttccctggacttttcactctccc 747 ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 426 ggagaaagttcctgtacctggggaaccagggtttcctttccctggacttttcactcttcc 485 Query: 748 ccaatctcaggaggaagcagaactgttgaggaactatctgaagcagataagggaggaaac 807 ||| || ||||||||||||||| |||||||||| ||| |||||||||||||||||||||| Sbjct: 486 ccagtcccaggaggaagcagaattgttgaggaattatttgaagcagataagggaggaaac 545 Query: 808 aagcgggaggctgctcaactgcgcttacagagctaatggcactccaaacaaatggtggtt 867 ||| || || |||||||||| || ||||||||||||||| ||||||||| |||||||| Sbjct: 546 aagtggaagattgctcaactgtgcatacagagctaatggctttccaaacaagtggtggtt 605 Query: 868 ggcttttgcaaagaggaagttcatgaacgttgtcatcctttaga 911 ||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 606 ggcttttgctaagaggaagttcatgaacattgtcatcctttaga 649
>ref|NM_001052919.1| Oryza sativa (japonica cultivar-group) Os02g0235000 (Os02g0235000) mRNA, complete cds Length = 564 Score = 460 bits (232), Expect = e-126 Identities = 355/396 (89%) Strand = Plus / Plus Query: 513 ttgatgaagcgataactttcttccgtgcaaatgttttcttcaaaaacttccatgtcaaaa 572 |||||||||| || || |||||||| |||||||| ||||||||||||||| |||| |||| Sbjct: 167 ttgatgaagcaattacattcttccgagcaaatgtcttcttcaaaaacttcaatgtgaaaa 226 Query: 573 gcccagcagacaaattgctcatctatctgacatcttacatcaatattgccttgaaaagac 632 ||||||||||||| || || ||||||||||||| |||||||||||||||| ||||||| | Sbjct: 227 gcccagcagacaagttactgatctatctgacattttacatcaatattgccctgaaaaggc 286 Query: 633 tagaaacctgccggacgctggctgtcggaaccaaggcaatcattaacctgggattggaga 692 | ||| ||||| || |||||||| || || |||||||||||||| ||||| ||||||| Sbjct: 287 tggaaggttgccgaacactggctgttgggacaaaggcaatcattaatctgggtttggaga 346 Query: 693 aagttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaat 752 |||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct: 347 aagttcctgtgcctggggaaccagggtttcccttccctggtcttttcactctaccccaat 406 Query: 753 ctcaggaggaagcagaactgttgaggaactatctgaagcagataagggaggaaacaagcg 812 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 407 ctcaggaggaagcagaactattgaggaattatctgaagcagataagggaggaaacaagtg 466 Query: 813 ggaggctgctcaactgcgcttacagagctaatggcactccaaacaaatggtggttggctt 872 | ||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 467 gaaggttgcttaactgcgcatacagagctaatggtactccaaacaaatggtggttggctt 526 Query: 873 ttgcaaagaggaagttcatgaacgttgtcatccttt 908 ||||||||||||| ||||||||| ||||||| |||| Sbjct: 527 ttgcaaagaggaaattcatgaacattgtcattcttt 562 Score = 97.6 bits (49), Expect = 8e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 386 atggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtcct 445 ||||||||||||||||| || ||||||| |||||| || ||||| || || |||||| Sbjct: 1 atggtttatcactctagctttgttgatgacaccgggattaccaaagcatgcggctgtcct 60 Query: 446 ttgcttccactaaaaactcatataaagggcccagccccagc 486 ||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 61 ttgcttccactaaaaactcatataaggggcccagcgccagc 101
>dbj|AK242666.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090029G01, full insert sequence Length = 1831 Score = 339 bits (171), Expect = 1e-89 Identities = 330/383 (86%) Strand = Plus / Plus Query: 385 catggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtcc 444 |||||||||||||||||| || ||||||| |||||| || ||||| || || ||||| Sbjct: 117 catggtttatcactctagctttgttgatgacaccgggattaccaaagcatgcggctgtcc 176 Query: 445 tttgcttccactaaaaactcatataaagggcccagccccagcctcagattcagataaggc 504 |||||||||||||||||||||||||| ||||||||| ||||| | ||| ||| ||||| Sbjct: 177 tttgcttccactaaaaactcatataaggggcccagcgccagcattcgatcaagacaaggc 236 Query: 505 ggatataattgatgaagcgataactttcttccgtgcaaatgttttcttcaaaaacttcca 564 || || |||||||||| || || |||||||| |||||||| ||||||||||||||| | Sbjct: 237 tgacattgttgatgaagcaattacattcttccgagcaaatgtcttcttcaaaaacttcaa 296 Query: 565 tgtcaaaagcccagcagacaaattgctcatctatctgacatcttacatcaatattgcctt 624 ||| ||||||||||||||||| || || ||||||||||||| |||||||||||||||| | Sbjct: 297 tgtgaaaagcccagcagacaagttactgatctatctgacattttacatcaatattgccct 356 Query: 625 gaaaagactagaaacctgccggacgctggctgtcggaaccaaggcaatcattaacctggg 684 |||||| || ||| ||||| || |||||||| || || |||||||||||||| ||||| Sbjct: 357 gaaaaggctggaaggttgccgaacactggctgttgggacaaaggcaatcattaatctggg 416 Query: 685 attggagaaagttcctgttcctggagaaccaggatttcctttccctggacttttcactct 744 ||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| Sbjct: 417 tttggagaaagttcctgtgcctggggaaccagggtttcccttccctggtcttttcactct 476 Query: 745 cccccaatctcaggaggaagcag 767 |||||||||||||||||||||| Sbjct: 477 accccaatctcaggaggaagcag 499 Score = 198 bits (100), Expect = 3e-47 Identities = 133/144 (92%) Strand = Plus / Plus Query: 765 cagaactgttgaggaactatctgaagcagataagggaggaaacaagcgggaggctgctca 824 ||||||| |||||||| ||||||||||||||||||||||||||||| || ||| |||| | Sbjct: 1307 cagaactattgaggaattatctgaagcagataagggaggaaacaagtggaaggttgctta 1366 Query: 825 actgcgcttacagagctaatggcactccaaacaaatggtggttggcttttgcaaagagga 884 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1367 actgcgcatacagagctaatggtactccaaacaaatggtggttggcttttgcaaagagga 1426 Query: 885 agttcatgaacgttgtcatccttt 908 | ||||||||| ||||||| |||| Sbjct: 1427 aattcatgaacattgtcattcttt 1450
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 268 bits (135), Expect = 4e-68 Identities = 225/255 (88%) Strand = Plus / Plus Query: 513 ttgatgaagcgataactttcttccgtgcaaatgttttcttcaaaaacttccatgtcaaaa 572 |||||||||| || || |||||||| |||||||| ||||||||||||||| |||| |||| Sbjct: 7643632 ttgatgaagcaattacattcttccgagcaaatgtcttcttcaaaaacttcaatgtgaaaa 7643691 Query: 573 gcccagcagacaaattgctcatctatctgacatcttacatcaatattgccttgaaaagac 632 ||||||||||||| || || ||||||||||||| |||||||||||||||| ||||||| | Sbjct: 7643692 gcccagcagacaagttactgatctatctgacattttacatcaatattgccctgaaaaggc 7643751 Query: 633 tagaaacctgccggacgctggctgtcggaaccaaggcaatcattaacctgggattggaga 692 | ||| ||||| || |||||||| || || |||||||||||||| ||||| ||||||| Sbjct: 7643752 tggaaggttgccgaacactggctgttgggacaaaggcaatcattaatctgggtttggaga 7643811 Query: 693 aagttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaat 752 |||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct: 7643812 aagttcctgtgcctggggaaccagggtttcccttccctggtcttttcactctaccccaat 7643871 Query: 753 ctcaggaggaagcag 767 ||||||||||||||| Sbjct: 7643872 ctcaggaggaagcag 7643886 Score = 198 bits (100), Expect = 3e-47 Identities = 133/144 (92%) Strand = Plus / Plus Query: 765 cagaactgttgaggaactatctgaagcagataagggaggaaacaagcgggaggctgctca 824 ||||||| |||||||| ||||||||||||||||||||||||||||| || ||| |||| | Sbjct: 7644694 cagaactattgaggaattatctgaagcagataagggaggaaacaagtggaaggttgctta 7644753 Query: 825 actgcgcttacagagctaatggcactccaaacaaatggtggttggcttttgcaaagagga 884 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 7644754 actgcgcatacagagctaatggtactccaaacaaatggtggttggcttttgcaaagagga 7644813 Query: 885 agttcatgaacgttgtcatccttt 908 | ||||||||| ||||||| |||| Sbjct: 7644814 aattcatgaacattgtcattcttt 7644837 Score = 93.7 bits (47), Expect = 1e-15 Identities = 86/99 (86%) Strand = Plus / Plus Query: 388 ggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtccttt 447 ||||||||||||||| || ||||||| |||||| || ||||| || || |||||||| Sbjct: 7643404 ggtttatcactctagctttgttgatgacaccgggattaccaaagcatgcggctgtccttt 7643463 Query: 448 gcttccactaaaaactcatataaagggcccagccccagc 486 ||||||||||||||||||||||| ||||||||| ||||| Sbjct: 7643464 gcttccactaaaaactcatataaggggcccagcgccagc 7643502
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 268 bits (135), Expect = 4e-68 Identities = 225/255 (88%) Strand = Plus / Plus Query: 513 ttgatgaagcgataactttcttccgtgcaaatgttttcttcaaaaacttccatgtcaaaa 572 |||||||||| || || |||||||| |||||||| ||||||||||||||| |||| |||| Sbjct: 60392 ttgatgaagcaattacattcttccgagcaaatgtcttcttcaaaaacttcaatgtgaaaa 60451 Query: 573 gcccagcagacaaattgctcatctatctgacatcttacatcaatattgccttgaaaagac 632 ||||||||||||| || || ||||||||||||| |||||||||||||||| ||||||| | Sbjct: 60452 gcccagcagacaagttactgatctatctgacattttacatcaatattgccctgaaaaggc 60511 Query: 633 tagaaacctgccggacgctggctgtcggaaccaaggcaatcattaacctgggattggaga 692 | ||| ||||| || |||||||| || || |||||||||||||| ||||| ||||||| Sbjct: 60512 tggaaggttgccgaacactggctgttgggacaaaggcaatcattaatctgggtttggaga 60571 Query: 693 aagttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaat 752 |||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct: 60572 aagttcctgtgcctggggaaccagggtttcccttccctggtcttttcactctaccccaat 60631 Query: 753 ctcaggaggaagcag 767 ||||||||||||||| Sbjct: 60632 ctcaggaggaagcag 60646 Score = 198 bits (100), Expect = 3e-47 Identities = 133/144 (92%) Strand = Plus / Plus Query: 765 cagaactgttgaggaactatctgaagcagataagggaggaaacaagcgggaggctgctca 824 ||||||| |||||||| ||||||||||||||||||||||||||||| || ||| |||| | Sbjct: 61454 cagaactattgaggaattatctgaagcagataagggaggaaacaagtggaaggttgctta 61513 Query: 825 actgcgcttacagagctaatggcactccaaacaaatggtggttggcttttgcaaagagga 884 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61514 actgcgcatacagagctaatggtactccaaacaaatggtggttggcttttgcaaagagga 61573 Query: 885 agttcatgaacgttgtcatccttt 908 | ||||||||| ||||||| |||| Sbjct: 61574 aattcatgaacattgtcattcttt 61597 Score = 93.7 bits (47), Expect = 1e-15 Identities = 86/99 (86%) Strand = Plus / Plus Query: 388 ggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtccttt 447 ||||||||||||||| || ||||||| |||||| || ||||| || || |||||||| Sbjct: 60164 ggtttatcactctagctttgttgatgacaccgggattaccaaagcatgcggctgtccttt 60223 Query: 448 gcttccactaaaaactcatataaagggcccagccccagc 486 ||||||||||||||||||||||| ||||||||| ||||| Sbjct: 60224 gcttccactaaaaactcatataaggggcccagcgccagc 60262
>dbj|AK108078.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E03, full insert sequence Length = 1296 Score = 254 bits (128), Expect = 6e-64 Identities = 170/184 (92%) Strand = Plus / Plus Query: 725 ttccctggacttttcactctcccccaatctcaggaggaagcagaactgttgaggaactat 784 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct: 731 ttccctggtcttttcactctaccccaatctcaggaggaagcagaactattgaggaattat 790 Query: 785 ctgaagcagataagggaggaaacaagcgggaggctgctcaactgcgcttacagagctaat 844 |||||||| ||||||||||||||||| || ||| |||| |||||||| |||||||||||| Sbjct: 791 ctgaagcaaataagggaggaaacaagtggaaggttgcttaactgcgcatacagagctaat 850 Query: 845 ggcactccaaacaaatggtggttggcttttgcaaagaggaagttcatgaacgttgtcatc 904 || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 851 ggtactccaaacaaatggtggttggcttttgcaaagaggaaattcatgaacattgtcatt 910 Query: 905 cttt 908 |||| Sbjct: 911 cttt 914
>emb|CT983185.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 544 Score = 111 bits (56), Expect = 5e-21 Identities = 116/136 (85%) Strand = Plus / Plus Query: 759 aggaagcagaactgttgaggaactatctgaagcagataagggaggaaacaagcgggaggc 818 |||||||||| || || ||||| ||||||||||||||||| || ||| ||||||| || | Sbjct: 58 aggaagcagagctattcaggaattatctgaagcagataagagaagaagcaagcggaagac 117 Query: 819 tgctcaactgcgcttacagagctaatggcactccaaacaaatggtggttggcttttgcaa 878 || | | | ||| || ||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 118 tgttgagcgtcgcatatagaccaaatgggactccaaacaaatggtggttggcatttgcaa 177 Query: 879 agaggaagttcatgaa 894 |||||||||||||||| Sbjct: 178 agaggaagttcatgaa 193
>gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete sequence Length = 116909 Score = 101 bits (51), Expect = 5e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 764 gcagaactgttgaggaactatctgaagcagataagggaggaaacaagcgggaggctgctc 823 |||||| |||| || || ||| |||||||||||||||| ||||||||||| ||| | || Sbjct: 20167 gcagaattgtttagaaattatttgaagcagataagggaagaaacaagcggaaggttacta 20226 Query: 824 aactgcgcttacagagctaatggcactccaaacaaatggtggttggcttttgcaaagagg 883 | | || |||||| |||||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 20227 agcgttgcatacagacctaatggcactccaaataaatggtggttggcatttgcaaaaagg 20286 Query: 884 aagttcatgaa 894 || |||||||| Sbjct: 20287 aaattcatgaa 20297 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 695 gttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaatc 753 ||||||||||||||||| | || |||||||| || ||||||||| |||| || ||||| Sbjct: 18087 gttcctgttcctggagagtctggttttccttttccaggacttttccctcttcctcaatc 18145 Score = 42.1 bits (21), Expect = 4.2 Identities = 75/93 (80%) Strand = Plus / Plus Query: 388 ggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtccttt 447 ||||||||||||||||||| | || ||||| || || | | ||| |||||||| ||| | Sbjct: 17692 ggtttatcactctagtttcgtagacgatgaaggaattaacagagcttgtgggtgccctct 17751 Query: 448 gcttccactaaaaactcatataaagggcccagc 480 ||||| ||||||| ||| || ||||| ||||| Sbjct: 17752 tcttcctctaaaaagtcacattaagggtccagc 17784
>gb|BT025737.1| Arabidopsis thaliana At1g60430 mRNA, complete cds Length = 525 Score = 52.0 bits (26), Expect = 0.004 Identities = 80/98 (81%) Strand = Plus / Plus Query: 696 ttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaatctc 755 ||||||||||||||||| | || ||||||||||| || || || | || || || || | Sbjct: 311 ttcctgttcctggagaaactggctttcctttcccaggtctcttttcgcttccgcagtccc 370 Query: 756 aggaggaagcagaactgttgaggaactatctgaagcag 793 |||| |||||||| || || ||||||||||| |||||| Sbjct: 371 aggacgaagcagagcttttcaggaactatcttaagcag 408
>ref|NM_104730.1| Arabidopsis thaliana ARPC3; structural molecule (ARPC3) mRNA, complete cds Length = 1046 Score = 52.0 bits (26), Expect = 0.004 Identities = 80/98 (81%) Strand = Plus / Plus Query: 696 ttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaatctc 755 ||||||||||||||||| | || ||||||||||| || || || | || || || || | Sbjct: 548 ttcctgttcctggagaaactggctttcctttcccaggtctcttttcgcttccgcagtccc 607 Query: 756 aggaggaagcagaactgttgaggaactatctgaagcag 793 |||| |||||||| || || ||||||||||| |||||| Sbjct: 608 aggacgaagcagagcttttcaggaactatcttaagcag 645
>emb|BX817695.1|CNS0AAUP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1009 Score = 52.0 bits (26), Expect = 0.004 Identities = 80/98 (81%) Strand = Plus / Plus Query: 696 ttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaatctc 755 ||||||||||||||||| | || ||||||||||| || || || | || || || || | Sbjct: 526 ttcctgttcctggagaaactggctttcctttcccaggtctcttttcgcttccgcagtccc 585 Query: 756 aggaggaagcagaactgttgaggaactatctgaagcag 793 |||| |||||||| || || ||||||||||| |||||| Sbjct: 586 aggacgaagcagagcttttcaggaactatcttaagcag 623
>emb|CR339063.8| Zebrafish DNA sequence from clone CH211-247J10 in linkage group 20, complete sequence Length = 176083 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 34 cttctctctctaaaaggaaaaaa 56 ||||||||||||||||||||||| Sbjct: 102742 cttctctctctaaaaggaaaaaa 102764
>gb|AC131297.11| Mus musculus chromosome 8, clone RP23-284E15, complete sequence Length = 188817 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1080 aatgaatccttcattttcttcc 1101 |||||||||||||||||||||| Sbjct: 57570 aatgaatccttcattttcttcc 57591
>gb|AC134583.5| Mus musculus BAC clone RP24-94C12 from chromosome 8, complete sequence Length = 184447 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1080 aatgaatccttcattttcttcc 1101 |||||||||||||||||||||| Sbjct: 177883 aatgaatccttcattttcttcc 177904
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 639 cctgccggacgctggctgtcgg 660 |||||||||||||||||||||| Sbjct: 2075032 cctgccggacgctggctgtcgg 2075053
>gb|AY084614.1| Arabidopsis thaliana clone 113281 mRNA, complete sequence Length = 1046 Score = 44.1 bits (22), Expect = 1.1 Identities = 79/98 (80%) Strand = Plus / Plus Query: 696 ttcctgttcctggagaaccaggatttcctttccctggacttttcactctcccccaatctc 755 ||||||||||||| ||| | || ||||||||||| || || || | || || || || | Sbjct: 548 ttcctgttcctggtgaaactggctttcctttcccaggtctcttttcacttcctcagtccc 607 Query: 756 aggaggaagcagaactgttgaggaactatctgaagcag 793 |||| |||||||| || || ||||||||||| |||||| Sbjct: 608 aggacgaagcagagcttttcaggaactatcttaagcag 645
>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence Length = 116177 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Minus Query: 696 ttcctgttcctggagaaccaggatttcctttccc 729 ||||||||||||||||| | || ||||||||||| Sbjct: 105067 ttcctgttcctggagaaactggctttcctttccc 105034
>emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on chromosome 3, complete sequence Length = 213090 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1055 cctgctgttatcatggccttca 1076 |||||||||||||||||||||| Sbjct: 8473 cctgctgttatcatggccttca 8494
>emb|AM263198.1| Listeria welshimeri serovar 6b str. SLCC5334 complete genome Length = 2814130 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccagccagccttcttctgttt 236 ||||||||||||||||||||| Sbjct: 891207 ccagccagccttcttctgttt 891187
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 ttttcttcaaaaacttccatgtcaa 570 |||| |||||||||||||||||||| Sbjct: 6353033 tttttttcaaaaacttccatgtcaa 6353009
>ref|XM_992467.1| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 3 (Chd3), mRNA Length = 7005 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 755 caggaggaagcagaactgttg 775 ||||||||||||||||||||| Sbjct: 3312 caggaggaagcagaactgttg 3292
>ref|XM_908691.2| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 3, transcript variant 4 (Chd3), mRNA Length = 7003 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 755 caggaggaagcagaactgttg 775 ||||||||||||||||||||| Sbjct: 3312 caggaggaagcagaactgttg 3292
>ref|XM_484041.4| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 3, transcript variant 1 (Chd3), mRNA Length = 7464 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 755 caggaggaagcagaactgttg 775 ||||||||||||||||||||| Sbjct: 3771 caggaggaagcagaactgttg 3751
>gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome 14, complete sequence Length = 203649 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1042 ttcttgcaatgtacctgctgttatcatgg 1070 |||| ||||||||||||||||| |||||| Sbjct: 130387 ttctggcaatgtacctgctgttttcatgg 130415
>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence Length = 210059 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 atcctttctctctaccagata 307 ||||||||||||||||||||| Sbjct: 1085 atcctttctctctaccagata 1065
>gb|AC165953.3| Mus musculus BAC clone RP24-75N14 from chromosome 17, complete sequence Length = 224622 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 gttcctggagaaccaggattt 721 ||||||||||||||||||||| Sbjct: 55419 gttcctggagaaccaggattt 55439
>gb|AC118640.8| Mus musculus chromosome 15, clone RP24-112A20, complete sequence Length = 179510 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 atcctttctctctaccagata 307 ||||||||||||||||||||| Sbjct: 100414 atcctttctctctaccagata 100434
>gb|AE006452.1| Lactococcus lactis subsp. lactis IL1403 section 214 of 218 of the complete genome Length = 10610 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 taattgatgaagcgataactt 530 ||||||||||||||||||||| Sbjct: 10112 taattgatgaagcgataactt 10132
>gb|BC060721.1| Mus musculus chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:6406263), partial cds Length = 4343 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 755 caggaggaagcagaactgttg 775 ||||||||||||||||||||| Sbjct: 2775 caggaggaagcagaactgttg 2755
>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence Length = 174600 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 gttcctggagaaccaggattt 721 ||||||||||||||||||||| Sbjct: 9514 gttcctggagaaccaggattt 9494
>gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187772 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 ttttcttcaaaaacttccatgtcaa 570 |||| |||||||||||||||||||| Sbjct: 112666 tttttttcaaaaacttccatgtcaa 112642
>gb|AC023708.4| Drosophila melanogaster X BAC RP98-12B22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175355 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 ttttcttcaaaaacttccatgtcaa 570 |||| |||||||||||||||||||| Sbjct: 15617 tttttttcaaaaacttccatgtcaa 15593
>gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, complete sequence Length = 179918 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 473 ggcccagccccagcctcagattcag 497 ||||||| ||||||||||||||||| Sbjct: 29871 ggcccagacccagcctcagattcag 29895
>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6, complete sequence Length = 174814 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 699 ctgttcctggagaaccaggat 719 ||||||||||||||||||||| Sbjct: 11221 ctgttcctggagaaccaggat 11241
>emb|CR847536.5| Zebrafish DNA sequence from clone DKEY-188N1 in linkage group 6, complete sequence Length = 67962 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 699 ctgttcctggagaaccaggat 719 ||||||||||||||||||||| Sbjct: 16825 ctgttcctggagaaccaggat 16805
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 755 caggaggaagcagaactgttg 775 ||||||||||||||||||||| Sbjct: 11494 caggaggaagcagaactgttg 11514
>gb|U64601.2| Caenorhabditis elegans cosmid M03F4, complete sequence Length = 31682 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 cttcttctgtttcacagctgt 245 ||||||||||||||||||||| Sbjct: 24231 cttcttctgtttcacagctgt 24251
>ref|XM_565847.1| Anopheles gambiae str. PEST ENSANGP00000028844 (ENSANGG00000023539), partial mRNA Length = 1719 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 gcggtgcaccgtacccggcgg 373 ||||||||||||||||||||| Sbjct: 934 gcggtgcaccgtacccggcgg 914
>gb|AC151744.23| Medicago truncatula clone mth2-32k10, complete sequence Length = 110897 Score = 42.1 bits (21), Expect = 4.2 Identities = 75/93 (80%) Strand = Plus / Minus Query: 388 ggtttatcactctagtttcattgatgatgacgggatcacaaaagcctgtgggtgtccttt 447 ||||||||||||||||||| | || ||||| || || | | ||| |||||||| ||| | Sbjct: 329 ggtttatcactctagtttcgtagacgatgaaggaattaacagagcttgtgggtgccctct 270 Query: 448 gcttccactaaaaactcatataaagggcccagc 480 ||||| ||||||| ||| || ||||| ||||| Sbjct: 269 tcttcctctaaaaagtcacattaagggtccagc 237 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 206,634,730 Number of extensions: 11635825 Number of successful extensions: 230006 Number of sequences better than 10.0: 39 Number of HSP's gapped: 230001 Number of HSP's successfully gapped: 49 Length of query: 1116 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1093 Effective length of database: 18,503,978,556 Effective search space: 20224848561708 Effective search space used: 20224848561708 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
