ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf48g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P83649:SRS1_ORYSA Salt-stress root protein RS1 - Oryza sativa (R... 117 9e-26

>P83649:SRS1_ORYSA Salt-stress root protein RS1 - Oryza sativa (Rice)|
          Length = 204
 Score =  117 bits (293), Expect = 9e-26
 Identities = 68/124 (54%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
 Frame = +2

Query: 110 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 289
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 290 PPEXXXXXXXXXXXXXXX-NSAAVIKFLDEMAKIGFPGAKLVSDAVVKSGTTPLSPAIVF 466
           PPE                N  AV KFL+E+AKI FPGAK VSDAV KSGTTPLSPAI F
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAF 120

Query: 467 ILDK 478
           IL+K
Sbjct: 121 ILEK 124


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 136,462,541
Number of extensions: 2631406
Number of successful extensions: 6224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6218
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 262
Effective length of database: 69,142,514
Effective search space: 18115338668
Effective search space used: 18115338668
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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