>LOC_Os01g41610:12001.t03682:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative,|
expressed
Length = 3401
Score = 143 bits (307), Expect(4) = 2e-68
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +2 / +2
Query: 281 SLPGRYEALWKEVDGVKQLWKNRKELRVEDLGIATLFGVELYAWFCLGEIAGRGFTLTGY 460
SLPGRYEA WKE DGVKQ+WKNRKEL+VEDLGI TLFGVELYAWFC+GEI GRGFT+TGY
Sbjct: 2915 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 3094
Query: 461 KV*IS 475
KV* S
Sbjct: 3095 KV*KS 3109
Score = 124 bits (265), Expect(4) = 2e-68
Identities = 52/61 (85%), Positives = 57/61 (93%)
Frame = +2 / +1
Query: 98 AMAARLAQLRTKAAQAAEFASKHGGAYYKEAMEKNKQYVVQPPSVEKCQELSKQLFYTRL 277
AMA+RLAQLR+KAAQA+E SKHG AYYKE MEKNKQ+VVQPP+VEKCQELSKQLFYTRL
Sbjct: 346 AMASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRL 525
Query: 278 A 280
A
Sbjct: 526 A 528
Score = 35.0 bits (70), Expect(4) = 2e-68
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3 / +1
Query: 582 RRAHNCNSASIICSLN 629
RRAH CN+ASIICS++
Sbjct: 3232 RRAHRCNTASIICSIS 3279
Score = 24.4 bits (47), Expect(4) = 2e-68
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 495 NILLADACRN 524
N LLADACRN
Sbjct: 3133 NTLLADACRN 3162
Score = 118 bits (253), Expect(5) = 8e-51
Identities = 52/62 (83%), Positives = 54/62 (87%)
Frame = -2 / -1
Query: 282 LARRV*KSCLESSWHFSTEGGCTTYCLFFSIASL**APPCFEANSAACAALVRSCASLAA 103
LARRV*KSCLESSWHFST GGCTT CLFFSI SL**A PCF+ +S ACAAL RSCASL A
Sbjct: 530 LARRV*KSCLESSWHFSTVGGCTTCCLFFSITSL**AHPCFDTSSDACAALDRSCASLDA 351
Query: 102 IA 97
IA
Sbjct: 350 IA 345
Score = 89.0 bits (188), Expect(5) = 8e-51
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = -1 / -2
Query: 478 QTNSDLIAG*GETSASNLT*AEPCVELNPKQCCNSKVLHPELLPVLPKLLHTINLLPQCF 299
+T DLIAG GE+SA+NL AEP ++LN K C NSKVL+ ELL +LP LL TI LP+C
Sbjct: 3112 RTLLDLIAGYGESSANNLAYAEPRIKLNSK*CHNSKVLYLELLSILPYLLDTIKFLPKCL 2933
Query: 298 IAAW*T 281
IAAW T
Sbjct: 2932 IAAWQT 2915
Score = 29.0 bits (57), Expect(5) = 8e-51
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / -2
Query: 624 ASKLLRHCCNCVLVL 580
+SKLL+ CCN VLVL
Sbjct: 3274 SSKLLKQCCNDVLVL 3230
Score = 27.6 bits (54), Expect(5) = 8e-51
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 525 NFDKHQLTVYY 493
+FDKHQLTVY+
Sbjct: 3163 HFDKHQLTVYF 3131
Score = 23.1 bits (44), Expect(5) = 8e-51
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / -3
Query: 572 SALQTFQKQNCE 537
S +TF KQNCE
Sbjct: 3219 STRKTFHKQNCE 3184
Score = 79.9 bits (168), Expect(5) = 7e-33
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1 / +3
Query: 154 RLEARRRLLQGGDGEEQAVRRAAPLRGEVPGALQAALLHAPRE 282
R+EAR RLLQGGDGEEQA R AA RGEVPGALQAALLH PR+
Sbjct: 402 RVEARVRLLQGGDGEEQAARGAATHRGEVPGALQAALLHPPRQ 530
Score = 64.8 bits (135), Expect(5) = 7e-33
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +1 / +1
Query: 370 PWNCNIVWG*ALRMVLPR*DCWQRFHLNRL*GLN*F 477
PWNC+I+W *AL +VL R DCWQR H NRL*GL F
Sbjct: 3004 PWNCDIIWS*ALCVVLRRRDCWQRIHHNRL*GLEEF 3111
Score = 30.9 bits (61), Expect(5) = 7e-33
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / +2
Query: 571 ECQQDEHTIATVPQ*FARSI 630
+ QDEH +AT+ Q*FARS+
Sbjct: 3221 DVSQDEHIVATLLQ*FARSL 3280
Score = 26.7 bits (52), Expect(5) = 7e-33
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 282 VYQAAMKHCGRRLMV 326
V QAAM+H GR LMV
Sbjct: 2916 VCQAAMRHFGRNLMV 2960
Score = 23.5 bits (45), Expect(5) = 7e-33
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 496 IYC*LMLVEITCLVSQF 546
I+C*LMLVE+T + F
Sbjct: 3134 IHC*LMLVEMTKIPPAF 3184
Score = 84.9 bits (179), Expect(3) = 1e-24
Identities = 41/68 (60%), Positives = 44/68 (64%)
Frame = -2 / -3
Query: 477 KLIQTL*PVKVKPLPAISPRQNHA*SSTPNNVAIPRXXXXXXXXXXXXXXTPSTSFHNAS 298
+L TL*PV V PLP ISP QNHA*SSTPNNV IPR TPS SF NAS
Sbjct: 3111 ELF*TL*PVMVNPLPTISPTQNHA*SSTPNNVTIPRSSTLSSFLFFHTCLTPSNSFQNAS 2932
Query: 297 *RPGRLAR 274
*RPG+L +
Sbjct: 2931 *RPGKLKK 2908
Score = 45.1 bits (92), Expect(3) = 1e-24
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -3 / -2
Query: 278 RGACRRAAWRAPGTSPR 228
RG CRRAAWRAPGTSPR
Sbjct: 526 RGGCRRAAWRAPGTSPR 476
Score = 29.0 bits (57), Expect(3) = 1e-24
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 622 EQIIEALLQLCARL 581
EQIIEA+LQ CARL
Sbjct: 3272 EQIIEAVLQRCARL 3231
Score = 48.3 bits (99), Expect(3) = 6e-09
Identities = 26/36 (72%), Positives = 26/36 (72%)
Frame = +3 / +3
Query: 369 TLELQHCLGLSSTHGSA*VRLLAEVSP*PAIRSELV 476
TLEL H L LS GSA* RLLAE SP*PAIRS V
Sbjct: 3003 TLEL*HYLELSFMRGSA*ARLLAEDSP*PAIRSRRV 3110
Score = 25.8 bits (50), Expect(3) = 6e-09
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 289 RPL*SIVEGG*WC 327
RPL* I+EG *WC
Sbjct: 2923 RPL*GILEGI*WC 2961
Score = 22.6 bits (43), Expect(3) = 6e-09
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 497 YTVS*CLSK 523
YTVS*CLSK
Sbjct: 3135 YTVS*CLSK 3161
Score = 49.6 bits (102), Expect(3) = 1e-08
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = -3 / -1
Query: 467 RPYSRLR*NLCQQSHLGRTMRRAQPQTMLQFQG 369
RPYSRL * LCQQS L RT +AQ Q M QFQG
Sbjct: 3101 RPYSRLW*ILCQQSRLRRTTHKAQLQIMSQFQG 3003
Score = 27.6 bits (54), Expect(3) = 1e-08
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3 / -1
Query: 326 HHQPPSTMLHSGLVDSR 276
HHQ PS M HSGL + R
Sbjct: 2960 HHQIPSKMPHSGLAN*R 2910
Score = 26.3 bits (51), Expect(3) = 1e-08
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / -3
Query: 626 ERANY*GTVAIVCSS 582
+RANY* +VA +CSS
Sbjct: 3276 DRANY*SSVATMCSS 3232
>LOC_Os05g45740:12005.t04062:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative,|
expressed
Length = 1934
Score = 126 bits (269), Expect(2) = 2e-52
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = +2 / +3
Query: 281 SLPGRYEALWKEVDGVKQLWKNRKELRVEDLGIATLFGVELYAWFCLGEIAGRGFTLTGY 460
SLPGRYEA WKE D VK LW+NRK+L VE G+A LFG+ELYAWFC+GEI GRGFT TGY
Sbjct: 1518 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 1697
Query: 461 KV*I 472
V*+
Sbjct: 1698 HV*V 1709
Score = 104 bits (221), Expect(2) = 2e-52
Identities = 40/62 (64%), Positives = 53/62 (85%)
Frame = +2 / +1
Query: 95 AAMAARLAQLRTKAAQAAEFASKHGGAYYKEAMEKNKQYVVQPPSVEKCQELSKQLFYTR 274
AA+A++LAQ++ KA AA FA+KHG AY++ MEKN++YV PP++E+CQELSKQLFYTR
Sbjct: 217 AALASKLAQMQAKACDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTR 396
Query: 275 LA 280
LA
Sbjct: 397 LA 402
Score = 81.7 bits (172), Expect(2) = 8e-29
Identities = 39/63 (61%), Positives = 42/63 (66%)
Frame = -2 / -1
Query: 282 LARRV*KSCLESSWHFSTEGGCTTYCLFFSIASL**APPCFEANSAACAALVRSCASLAA 103
LARRV*KSCLESSWH S GG TY FFS+++L A PCF AN AA A CAS A
Sbjct: 404 LARRV*KSCLESSWHLSMVGGSATYFWFFSMSALWYAHPCFAANLAASHAFACICASFDA 225
Query: 102 IAA 94
AA
Sbjct: 224 SAA 216
Score = 69.3 bits (145), Expect(2) = 8e-29
Identities = 27/60 (45%), Positives = 44/60 (73%)
Frame = -1 / -1
Query: 472 NSDLIAG*GETSASNLT*AEPCVELNPKQCCNSKVLHPELLPVLPKLLHTINLLPQCFIA 293
+SD++A ++S ++LT AEP V+LN K+C N+ +L+ ++L V P++LH I LP+C IA
Sbjct: 1709 HSDMVASESKSSTNDLTNAEPRVQLNAKKCSNASMLNVQILSVSPQVLHLIRFLPECLIA 1530
Score = 49.6 bits (102), Expect(3) = 4e-13
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = -2 / -2
Query: 468 QTL*PVKVKPLPAISPRQNHA*SSTPNNVAIP 373
QT *PVKV PLP ISP QNHA +S P + A P
Sbjct: 1705 QTW*PVKVNPLPTISPTQNHAYNSMPKSAATP 1610
Score = 39.6 bits (80), Expect(3) = 4e-13
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -2
Query: 278 RGACRRAAWRAPGTS 234
RG CRRAAWRAPGTS
Sbjct: 400 RGGCRRAAWRAPGTS 356
Score = 28.6 bits (56), Expect(3) = 4e-13
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 321 STSFHNAS*RPGRL 280
S SF NAS*RPGRL
Sbjct: 1558 SASFQNAS*RPGRL 1517
Score = 58.3 bits (121), Expect(2) = 1e-09
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = +1 / +3
Query: 151 IRLEARRRLLQGGDGEEQAVRRAAPLRGEVPGALQAALLHAPRESTRP 294
+R EAR R+ QG GEE VRR EVPGALQAALLH PR+ P
Sbjct: 273 VRGEARVRVPQGAHGEEPEVRRRPAHHREVPGALQAALLHPPRQVGPP 416
Score = 28.1 bits (55), Expect(2) = 1e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1 / +2
Query: 373 WNCNIVWG*ALRMVLPR*DCWQRFHLNRL 459
W C W * +R+VL *D W R + + L
Sbjct: 1610 WRCCTFWH*VVRVVLRW*DRW*RIYFHWL 1696
>LOC_Os01g52200:12001.t04647:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative|
Length = 2199
Score = 90.0 bits (190), Expect(3) = 2e-42
Identities = 33/57 (57%), Positives = 47/57 (82%)
Frame = +2 / +1
Query: 119 QLRTKAAQAAEFASKHGGAYYKEAMEKNKQYVVQPPSVEKCQELSKQLFYTRLASLP 289
QL+++A +A A+KHG A+++E ME+NK+YV+ PP+++ CQELSKQLFYTRLA P
Sbjct: 115 QLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLARSP 285
Score = 69.3 bits (145), Expect(3) = 2e-42
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2 / +1
Query: 356 LRVEDLGIATLFGVELYAWFCLGEIAGRGFTLTGYKV* 469
L+ ED+G+ATLFG+EL AWF GE+ GRGFT TGY V*
Sbjct: 2086 LKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV* 2199
Score = 58.8 bits (122), Expect(3) = 2e-42
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 272 RLASLPGRYEALWKEVDGVKQLWKNRKELRVE 367
R S+PGRYE+ WKEVDG K LWKNRK L ++
Sbjct: 1996 RSCSIPGRYESFWKEVDGAKLLWKNRKNLNLK 2091
Score = 58.3 bits (121), Expect(3) = 2e-18
Identities = 32/57 (56%), Positives = 34/57 (59%)
Frame = -2 / -2
Query: 288 GRLARRV*KSCLESSWHFSTEGGCTTYCLFFSIASL**APPCFEANSAACAALVRSC 118
G LARRV*KSCLESSWH GG T LF S++S A PC A A AL SC
Sbjct: 284 GDLARRV*KSCLESSWHVWMVGGSMT*RLFRSMSSSWNARPCLAALLVASHALDCSC 114
Score = 48.7 bits (100), Expect(3) = 2e-18
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = -2 / -2
Query: 465 TL*PVKVKPLPAISPRQNHA*SSTPNNVAIP 373
T *PVKV PLP SP NHA +S PNNVA P
Sbjct: 2195 TW*PVKVNPLPTTSPPANHAINSIPNNVATP 2103
Score = 29.5 bits (58), Expect(3) = 2e-18
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2 / -2
Query: 324 PSTSFHNAS*RPGRLARR 271
PSTSF N S*RPG L R
Sbjct: 2048 PSTSFQNDS*RPGMLQDR 1995
Score = 42.8 bits (87), Expect(4) = 7e-12
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -1 / -1
Query: 466 DLIAG*GETSASNLT*AEPCVELNPKQCCNSKVL 365
D++A ++S ++ T ++PC +LN KQCCN+ +L
Sbjct: 2196 DMVACESKSSTNDFTTSKPCYQLNTKQCCNANIL 2095
Score = 39.6 bits (80), Expect(4) = 7e-12
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 278 RGACRRAAWRAPGTS 234
RG CRRAAWRAPGTS
Sbjct: 274 RGGCRRAAWRAPGTS 230
Score = 25.8 bits (50), Expect(4) = 7e-12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1 / -1
Query: 355 LLPVLPKLLHTINLLPQCFIAA 290
+LPV P+ L INL P+ + A
Sbjct: 2079 ILPVFPQELCAINLFPERLVTA 2014
Score = 24.0 bits (46), Expect(4) = 7e-12
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2 / -2
Query: 207 CLFFSIASL**APPCFEANSAACAALVRSCASLAAIAA 94
CL S +L A PC A AA A S AS AA
Sbjct: 116 CLLPSTTALLYAHPCLAATLAASRAADPSVASFDPSAA 3
Score = 51.5 bits (106), Expect(2) = 2e-08
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +1 / +3
Query: 154 RLEARRRLLQGGDGEEQAVRRAAPLRGEVPGALQAALLHAPRE 282
R +AR R+ +G G EQA+R +VPGALQAALLH PR+
Sbjct: 150 RGQARARVPRGAHGAEQALRHRPAHHPDVPGALQAALLHPPRQ 278
Score = 30.9 bits (61), Expect(2) = 2e-08
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1 / +3
Query: 373 WNCNIVWG*ALRMVLPR*DCWQRFHLNRL 459
W CNIVW * MV * W R + +RL
Sbjct: 2103 WRCNIVWY*VDSMVCWW*SRW*RIYFHRL 2189
>LOC_Os05g38350:12005.t03377:unspliced-genomic glycerol-3-phosphate acyltransferase 8, putative, expressed|
Length = 2808
Score = 34.1 bits (68), Expect(2) = 1.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 211 RRAAPLRGEVPGALQAALLHAPRESTRP 294
RR P +VPGAL A LL A R + RP
Sbjct: 2034 RRGVPRGDDVPGALPAPLLRAVRRAQRP 2117
Score = 21.7 bits (41), Expect(2) = 1.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2 / +3
Query: 74 RRFVKVPAAMAARLAQLRTKAAQAAEFASKHGGAYYKEAMEKNKQYVVQPP 226
RR + PAA + A +R A A GGA ++ + ++ V+ P
Sbjct: 1785 RRRARRPAARRRQRAGVRRPLRVHAPDADGPGGARHRARPPRGRRDVLHLP 1937
>LOC_Os05g43470:12005.t03838:unspliced-genomic membrane protein, OMP85 family, putative, expressed|
Length = 4318
Score = 25.8 bits (50), Expect(2) = 5.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3 / +3
Query: 603 SASIICSLNCPFLCVVCN 656
S++ C+L CP LC C+
Sbjct: 705 SSACACALVCPCLCQTCS 758
Score = 23.1 bits (44), Expect(2) = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / +1
Query: 656 PFPLTHAAPLLCCL 697
P+ T AAPL CCL
Sbjct: 841 PWAHTCAAPLNCCL 882
>LOC_Os01g56320:12001.t05041:unspliced-genomic peptidase/ subtilase, putative, expressed|
Length = 5708
Score = 29.9 bits (59), Expect(2) = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1 / -2
Query: 697 QATQEWCSMCQWKGLQTTHKNGQL 626
Q T CS QWK L T++ GQL
Sbjct: 3067 QTTPAMCSCAQWKILLGTYEQGQL 2996
Score = 24.0 bits (46), Expect(2) = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3 / -1
Query: 326 HHQPPSTMLHSGLVDSRGACRRAAWRAPGTSPR 228
H ++ H+ + S+ A R+A +AP SPR
Sbjct: 389 HATAHCSLRHAQPIASKRALHRSAPKAPQESPR 291
>LOC_Os06g07790:12006.t00661:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 6299
Score = 26.3 bits (51), Expect(2) = 7.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1 / +1
Query: 163 ARRRLLQGGDGEEQAVRRAAPLRGEVPGALQAALLHAPR 279
A+R +GG RR A + VP LQA L+ A R
Sbjct: 1948 AQRVARRGGVPPALPPRRRAAVARRVPALLQAVLVQAER 2064
Score = 22.1 bits (42), Expect(2) = 7.2
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = +1 / +2
Query: 370 PWNCNIVWG 396
PW C + WG
Sbjct: 2177 PWPCQVRWG 2203
>LOC_Os01g67240:12001.t06080:unspliced-genomic AFH1, putative, expressed|
Length = 4193
Score = 29.5 bits (58), Expect(2) = 9.0
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3 / -2
Query: 296 SGLVDSRGACRRAAWRAPGTSPRR 225
SG RG R AA RAPGTS RR
Sbjct: 1174 SGGPTGRGWRREAARRAPGTSSRR 1103
Score = 23.5 bits (45), Expect(2) = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / -1
Query: 581 CWHSALQT 558
CWHS LQT
Sbjct: 2306 CWHSLLQT 2283
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 248,594,734
Number of extensions: 3836333
Number of successful extensions: 20289
Number of sequences better than 10.0: 34
Length of query: 262
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 213
Effective length of database: 52,856,264
Effective search space: 11258384232
Effective search space used: 11258384232
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)