ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf42c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK067924:Os06g0329300 119 2e-27
2AK110071: 28 7.2
3AK110474:Os10g0346300 28 7.2
4AK101275:Os01g0874100 27 9.4
5AK100772:Os06g0303800 27 9.4
6AK059730:Os04g0463400 27 9.4

>AK067924:Os06g0329300 |
          Length = 149
 Score =  119 bits (297), Expect = 2e-27
 Identities = 76/150 (50%), Positives = 82/150 (54%), Gaps = 18/150 (12%)
 Frame = +3

Query: 27  MEDHFGRKVSREEEEEAAVKPTRSFRYEDYSTRRVFLRSYPLQWD--SPAPG-GEKQ--- 188
           M DH  RK++  +EEEAAVKPTRSFRYEDYSTRRVFLRSYPLQWD  SPAPG  EKQ   
Sbjct: 1   MADH--RKIT-SDEEEAAVKPTRSFRYEDYSTRRVFLRSYPLQWDWASPAPGEKEKQQQQ 57

Query: 189 ----------GXXXXXXXXXXXXXXXXXXXXWKRQVVVAVVEWGEEXXXXXXXXXXXXXX 338
                                          W+RQV VAVVEWGEE              
Sbjct: 58  QQVQGVVAGGDGEEDDDEYGGGGGDERGGRRWRRQVAVAVVEWGEEKLLLLRRVKKRLAL 117

Query: 339 XXIGCHYS--RPALPYKSGGGSCTTAMLKS 422
             IGCHY+  R ALP+KS   SCT AML S
Sbjct: 118 YLIGCHYAGHRAALPFKSSSASCTAAMLAS 147



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>AK110071: |
          Length = 420

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 57  REEEEEAAVKPTRSFRYEDYSTRRVFLRSYPLQWDSPAP 173
           RE+ + AA + TR  R    STR  F    P +   PAP
Sbjct: 173 REQAQSAAAEATRYARNTAASTRETFQERRPYESRPPAP 211



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>AK110474:Os10g0346300 |
          Length = 599

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = +3

Query: 9   PAIAAK--MEDHFGRKV---SREEEEEAAVKPTRSFRYED 113
           PA AA   +E H+  ++   + EEEEE A +P R++ Y D
Sbjct: 418 PAAAATPILEAHYYHRLHAGAGEEEEELAERPPRAYNYTD 457



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>AK101275:Os01g0874100 |
          Length = 439

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 39  FGRKVSREEEEEAAVKPTRSFRYEDYSTRRVFLRS 143
           F  +V +E+E  + +KP R      +S R VF+R+
Sbjct: 261 FVTRVMQEKESSSGIKPLRLMERSVFSDRMVFVRA 295



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>AK100772:Os06g0303800 |
          Length = 137

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 646 QYIHERSTTCTNSYYLYVGTH 584
           QYI++ ST C  S ++Y+  H
Sbjct: 55  QYINDESTNCAESMWVYLNAH 75



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>AK059730:Os04g0463400 |
          Length = 252

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 15  IAAKME-DHFGRKVSREEEEEAAVKPTRS 98
           +AAK E DH+ R++ RE+EE  AV  T +
Sbjct: 88  LAAKSEADHYQREMKREQEEIIAVPDTEA 116


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 15,157,241
Number of extensions: 303028
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,515,878
Effective search space: 1439484750
Effective search space used: 1439484750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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