ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf48b02 |
|---|---|
| Clone Library Name | barley_pub |
>Q9ZT66:E134_MAIZE Endo-1,3;1,4-beta-D-glucanase precursor - Zea mays (Maize)| Length = 303 Score = 176 bits (446), Expect = 1e-43 Identities = 99/193 (51%), Positives = 129/193 (66%), Gaps = 5/193 (2%) Frame = +3 Query: 111 ATPQCCADPPTLNPAGGE----GKVV-DSFGGITAYVSGARESKAAVVLISDVFGFEAPN 275 A QC +PP + G + G+VV D GG+ AYVSGA S AVVL SDVFG+EAP Sbjct: 25 AHSQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPL 84 Query: 276 LRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 455 LR+I DKVA +GY VVVPDFL GD Y+ + + WL+ H+P KA E+AKP+ AALK+ Sbjct: 85 LRQIVDKVAKAGYFVVVPDFLKGD-YLDDK--KNFTEWLEAHSPVKAAEDAKPLFAALKK 141 Query: 456 QGVSTVGAAGYCWGAKVVAELAKANEIHAAVMSHPSFVTVEDIKEVKCPIAVLGAEIDKT 635 +G S V GYCWG K+ E+ K +++ A +SHP VT +D+KEVK PI +LGA+ D T Sbjct: 142 EGKS-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTT 200 Query: 636 SPPELVKQFEQVL 674 +PP+ V +F VL Sbjct: 201 TPPKEVYRFVHVL 213
>P39721:YAE9_YEAST Uncharacterized protein YAL049C - Saccharomyces cerevisiae (Baker's| yeast) Length = 246 Score = 105 bits (262), Expect = 3e-22 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 8/217 (3%) Frame = +3 Query: 189 GITAYVSGARESKAAVVLI-SDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPEN 365 G+ Y +G+ K V++I +DV+G + N+ ADK AS+GY+V VPD L GD + Sbjct: 29 GLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI---S 85 Query: 366 ADRPI--QVWLKEHAPGKAFEEAKPVIAALK-EQGVSTVGAAGYCWGAKVVAELAKANE- 533 +D+PI W + H+P + + LK E +G GYC+GAK + + Sbjct: 86 SDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGG 145 Query: 534 -IHAAVMSHPSFVTVEDIKEV--KCPIAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFV 704 +AA ++HPSFV++E+I+ + K PI + AE D P L E+ L N + + Sbjct: 146 LANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHA-TYQL 204 Query: 705 KIFPGVSHGWTVRYKSEDAGAVKSAEEALSHMIDWFS 815 +F GV+HG+ R + E+ L I WF+ Sbjct: 205 DLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWFN 241
>O14359:YB4E_SCHPO Uncharacterized protein C30D10.14 - Schizosaccharomyces pombe| (Fission yeast) Length = 249 Score = 93.2 bits (230), Expect = 2e-18 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 11/202 (5%) Frame = +3 Query: 162 EGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLH 341 +GK +++FGG+T YV G+ + ++ D+FG + +++ ADK+A G+ V +PDFL Sbjct: 21 KGKEIENFGGLTTYVVGSTSNTRVLIGFMDIFGL-SDQIKEGADKLADDGFTVYLPDFLE 79 Query: 342 GDPY--------VPENADRPIQVWLKEHAPGKAFEEAKPVIAALK-EQGVS-TVGAAGYC 491 G P PE+ + +P + + V+ A++ G + T+G G+C Sbjct: 80 GKPLPVTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFC 139 Query: 492 WGAKVVAELAKANEIHAAVMSHPSFVTVEDIKEVKCPIAVLGAEIDKTSPPELVKQFEQV 671 WGAKV+ + HPSF D V CP+ L K +++K++E+ Sbjct: 140 WGAKVLVTYPATIDFVGIASCHPSFPDSADAANVHCPVLFL---CSKDEDAKIIKEWEEA 196 Query: 672 LSSNSGIA-HFVKIFPGVSHGW 734 +N A + F + HGW Sbjct: 197 FKTNPAYAKSSFETFSDMFHGW 218
>Q7DFU6:YGHX_ECOLI Uncharacterized protein yghX - Escherichia coli| Length = 278 Score = 58.5 bits (140), Expect = 4e-08 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Frame = +3 Query: 231 AVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPG 410 AVV++ + G P + +A +VA +GY+ + PD L P N D+ ++ ++ P Sbjct: 83 AVVVVHENRGLN-PYIEDVARRVAKAGYIALAPDGLSSVGGYPGNDDKGREL-QQQVDPT 140 Query: 411 KAFEEAKPVIAALKE--QGVSTVGAAGYCWGAKVVAELAKA-NEIHAAVMSHPSFVTVED 581 + I ++ Q VG G+C+G V A A E+ AV + D Sbjct: 141 NLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTAD 200 Query: 582 IKEVKCPIAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHGW----TVRYK 749 + +++ P+ + AE+D T E +E L +N+ + + I+PGV+HG+ T RY Sbjct: 201 VAKIEAPLLLHFAELD-TRINEGWPAYEAALKANNKV-YEAYIYPGVNHGFHNDSTPRYD 258 Query: 750 SEDAGAVKSAEEALSHMIDWFSKNL 824 +A+ A + WF K L Sbjct: 259 K------SAADLAWQRTLKWFDKYL 277
>O67802:DLHH_AQUAE Putative carboxymethylenebutenolidase - Aquifex aeolicus| Length = 231 Score = 55.8 bits (133), Expect = 3e-07 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%) Frame = +3 Query: 192 ITAYVSGARESKAAVVLISDVFGFEAP--NLRKIADKVASSGYLVVVPDFLHGDPYV--P 359 + Y++ + + AV++ + +G E+P N+++I DK+A G++ PDF G Y P Sbjct: 14 VRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQ-YADNP 72 Query: 360 ENADRPIQVWLKEHAP--GKAFEEAKPVIAALKEQGVSTVGAAGYCWGAKVVAEL-AKAN 530 ++A + + ++ + F+ + + + VG G+C G + AK Sbjct: 73 DDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFP 132 Query: 531 EIHAAVMSHPSF--VTVEDIKEVKCPIAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFV 704 E+ A + +T + + +K PI + AE D+ + V + + N G+ V Sbjct: 133 EMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEVIDIAKTVWKN-GVDVQV 191 Query: 705 KIFPGVSHGWTVRYKSEDAGAVKSAEEALSHMIDWFSKNLQ 827 K+F GV+H + + K ED K A EA +++F L+ Sbjct: 192 KVFSGVTHAF-LNEKREDVYDPKRACEAWELAVNFFKTYLK 231
>Q8ZAL4:DLHH_YERPE Putative carboxymethylenebutenolidase - Yersinia pestis| Length = 267 Score = 53.1 bits (126), Expect = 2e-06 Identities = 45/211 (21%), Positives = 91/211 (43%), Gaps = 15/211 (7%) Frame = +3 Query: 234 VVLISDVFGFEAPNLRKIADKVASSGYLVVVPD--FLHGDPYVPENADRPIQVWLKEHAP 407 V+++ ++FG +++ I ++A GYL + P+ F GD N + + +K+ Sbjct: 49 VIVVQEIFGVHE-HIQDICRRLAKQGYLAIAPELYFRQGDAKDYSNINELVNNLVKKVPD 107 Query: 408 GKAFEEAKPVIAALKEQGVST--VGAAGYCWGAKVVAELAKAN-EIHAAVMSHPSFVTVE 578 + + G T + G+CWG ++ A N ++ AAV + V + Sbjct: 108 RQVLVDLDHTAHWASRHGGDTKKLAITGFCWGGRIAWLYAAHNPQLKAAVAWYGKLVGEK 167 Query: 579 DIKEVKCPIAV----------LGAEIDKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSH 728 + K P+ V L D + P E ++ Q L + + A + ++P H Sbjct: 168 TLFLPKYPVDVAIDLCAPVLGLYGGKDTSIPAEHIETMRQALRAANADAEII-VYPEAGH 226 Query: 729 GWTVRYKSEDAGAVKSAEEALSHMIDWFSKN 821 + Y+ + +SA++ M+DWF+++ Sbjct: 227 AFNADYRP--SYHAESAQDGWQRMLDWFTQH 255
>P71505:DLHH_METEX Putative carboxymethylenebutenolidase precursor - Methylobacterium| extorquens (Protomonas extorquens) Length = 291 Score = 44.3 bits (103), Expect = 9e-04 Identities = 44/236 (18%), Positives = 94/236 (39%), Gaps = 18/236 (7%) Frame = +3 Query: 159 GEGKVVDSFGGITAYVSGARESKA--AVVLISDVFGFEAPNLRKIADKVASSGYLVVVPD 332 GE K+ G I AY + E ++++ ++FG +++ + ++A GY + P+ Sbjct: 54 GEVKIPMQDGVIPAYRAMPAEGGPFPTILVVQEIFGVHE-HIKDVCRRLAKLGYFALAPE 112 Query: 333 FL--HGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKEQG---VSTVGAAGYCWG 497 GD + + + + + + + +A K G + +G G+CWG Sbjct: 113 LYARQGDVSTLTDIQQIVSEVVSKVPDDQVMSDLDAAVAFAKGTGKADTARLGITGFCWG 172 Query: 498 AKVVAELAKAN-EIHAAVMSHPSFV----------TVEDIKEVKCPIAVLGAEIDKTSPP 644 ++ A N + A V + V V+ ++K P+ L D+ P Sbjct: 173 GRITWLYAAHNPAVKAGVAWYGRLVGDSSALMPKNPVDVAADLKAPVLGLYGGADQGIPV 232 Query: 645 ELVKQFEQVLSSNSGIAHFVKIFPGVSHGWTVRYKSEDAGAVKSAEEALSHMIDWF 812 + + ++ + FV ++P H + Y+ + + A++ + DWF Sbjct: 233 ATIDRMKEACRAAGKTCDFV-VYPEAGHAFHADYR--PSYRAEPAQDGWKRLQDWF 285
>P95862:DLHH_SULSO Putative carboxymethylenebutenolidase - Sulfolobus solfataricus| Length = 257 Score = 40.0 bits (92), Expect = 0.016 Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 39/253 (15%) Frame = +3 Query: 177 DSFGG-ITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPY 353 DS G I A+++ K AV++I +++G N++ I+ ++A+ GY+ + P + Sbjct: 8 DSDGAKIRAFLATPENPKLAVIVIHEIWGLN-DNIKDISRRLANEGYMALAPQLYTRNED 66 Query: 354 V-----------------PENADRP-------------------IQVWLKEHAPGKAFEE 425 V PE + P + V ++ + ++ Sbjct: 67 VLNEGNIQNVMMKVWSIPPEKRNDPNSYQQIMSALDEKGKKVAELLVLNRQKTEEQMIKD 126 Query: 426 AKPVIAALKEQGVSTVGAAGYCWGAKVVAELAKANEIHAAVMSH-PSFVTVEDIKEVKCP 602 A + QGV + + G+C G + +LA + ++ + + +E I+++K P Sbjct: 127 AIKAYEYVSSQGVKKIVSMGFCMGGGLAFQLATEVPLDGTIVFYGRNPQPLEAIQKIKGP 186 Query: 603 IAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHG-WTVRYKSEDAGAVKSA 779 I L A D L ++ + +KI+PG H + R +S + A + A Sbjct: 187 ILGLYAGEDPPIDAGLPDLISAIIKYKKDLE--LKIYPGAYHAFFNDRGRSYNKEAAEDA 244 Query: 780 EEALSHMIDWFSK 818 E + + SK Sbjct: 245 WERVKSFLRRVSK 257
>Q68801:POLG_HCVJK Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus| genotype 3k (isolate JK049) (HCV) Length = 3019 Score = 35.8 bits (81), Expect = 0.31 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 6/137 (4%) Frame = +3 Query: 294 KVASSGYLVV--VPDFLHGDPYVPENADRPIQVWLKE---HAPGKAFEEAKPVIAALKEQ 458 +VAS Y+ V V DF + + P QV L E G PV L Sbjct: 2089 RVASDSYVEVRKVGDFHYVTGTTDDGLKCPCQVPLPEFFTELDGVRLHRYAPVCRPLLRD 2148 Query: 459 GVS-TVGAAGYCWGAKVVAELAKANEIHAAVMSHPSFVTVEDIKEVKCPIAVLGAEIDKT 635 V+ TVG Y G+++ E + +++ PS +TVE K +D+ Sbjct: 2149 DVTFTVGLNSYVIGSQLPCEPEPDVAVVTSMLQDPSHITVETAKR----------RLDRG 2198 Query: 636 SPPELVKQFEQVLSSNS 686 SPP L LS+ S Sbjct: 2199 SPPSLASSSASQLSAPS 2215
>Q43914:DLHH_AZOBR Putative carboxymethylenebutenolidase - Azospirillum brasilense| Length = 231 Score = 35.0 bits (79), Expect = 0.52 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 10/205 (4%) Frame = +3 Query: 150 PAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVP 329 PAG +G SF A +G + VV I ++FG +R + D A+ G+L V P Sbjct: 7 PAGDDG----SFSAYVAKPAGGGPAPGLVV-IQEIFGVNQV-MRDLCDAFAAQGWLAVCP 60 Query: 330 D-FLHGDPYVPENADRPIQVWLKEHA------PGKAFEEAKPVIAALKEQGVSTVGAAG- 485 D F +P V + D+ + W + A K + ++P ++ G Sbjct: 61 DLFWRQEPGV-QITDKTQEEWNRAFALMNGMDQDKRWTTSRPPCRGCARIRIAPAKRVGR 119 Query: 486 YCWGAKVVAELAKANEIHAAVMSHPSFV--TVEDIKEVKCPIAVLGAEIDKTSPPELVKQ 659 G ++ +A ++ A V + + V + + P+ + AE D+ P E ++ Sbjct: 120 LLLGRRLAFMMAARSDSDANVSYYGVGLDGLVGEAASITKPLLMHIAEKDQFVPAEAREK 179 Query: 660 FEQVLSSNSGIAHFVKIFPGVSHGW 734 + N + ++PGV H + Sbjct: 180 VLAAVKGNPNVT--AHVYPGVDHAF 202
>Q8G0Y3:SYV_BRUSU Valyl-tRNA synthetase - Brucella suis| Length = 910 Score = 32.0 bits (71), Expect = 4.4 Identities = 23/79 (29%), Positives = 40/79 (50%) Frame = +3 Query: 219 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 398 E KA +V + + F A ++I + + GYL + D H P+ + PI+ +L + Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384 Query: 399 HAPGKAFEEAKPVIAALKE 455 A E AKP +AA+++ Sbjct: 385 QWYVNAGELAKPAMAAVRD 403
>Q8YGX8:SYV_BRUME Valyl-tRNA synthetase - Brucella melitensis| Length = 910 Score = 32.0 bits (71), Expect = 4.4 Identities = 23/79 (29%), Positives = 40/79 (50%) Frame = +3 Query: 219 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 398 E KA +V + + F A ++I + + GYL + D H P+ + PI+ +L + Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384 Query: 399 HAPGKAFEEAKPVIAALKE 455 A E AKP +AA+++ Sbjct: 385 QWYVNAGELAKPAMAAVRD 403
>Q72DQ6:EFTS_DESVH Elongation factor Ts - Desulfovibrio vulgaris (strain Hildenborough| / ATCC 29579 / NCIMB 8303) Length = 287 Score = 31.2 bits (69), Expect = 7.6 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 627 DKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHGWTVRYKSEDAGAVKSAE 782 DKT+ EL+KQ + + N G+A FV+ G EDA A ++AE Sbjct: 247 DKTTVAELLKQTSKAVGDNLGVARFVRFQLG-----------EDAAAEEAAE 287
>Q98LB1:SYV_RHILO Valyl-tRNA synthetase - Rhizobium loti (Mesorhizobium loti)| Length = 927 Score = 30.8 bits (68), Expect = 9.9 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +3 Query: 279 RKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 455 +KI + + G+L V H P+ + PI+ +L E A E AKP IA+++E Sbjct: 345 KKIVELMEEGGFLEKVEPHRHAVPH-GDRGGVPIEPFLTEQWYANAAELAKPAIASVRE 402
>Q9Y2N3:PO121_HUMAN Nuclear envelope pore membrane protein POM 121 - Homo sapiens (Human)| Length = 1229 Score = 30.8 bits (68), Expect = 9.9 Identities = 22/70 (31%), Positives = 27/70 (38%) Frame = +3 Query: 102 GRMATPQCCADPPTLNPAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLR 281 G AT P + PA G V SFG T+ GA A+ S VFG P+ Sbjct: 1018 GLKATASAFGAPASSQPAFGGSTAVFSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPF 1077 Query: 282 KIADKVASSG 311 A +G Sbjct: 1078 TFGGSAAPAG 1087
>Q8DT57:MURA1_STRMU UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 - Streptococcus| mutans Length = 423 Score = 30.8 bits (68), Expect = 9.9 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 417 FEEAKPVIAALKEQGVSTVGAAGYCWGAKVVAELAKANEIHAAVMSHPSFVT 572 +E +P+I+ L+E GV G +V++++ K + M HP F T Sbjct: 260 WEHNRPLISKLREMGVQVTEEER---GIRVISDVTKLRPVTVKTMPHPGFPT 308 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 165,588,203 Number of extensions: 3317994 Number of successful extensions: 9483 Number of sequences better than 10.0: 16 Number of HSP's gapped: 9474 Number of HSP's successfully gapped: 16 Length of query: 355 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 241 Effective length of database: 69,416,809 Effective search space: 16729450969 Effective search space used: 16729450969 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
