ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf38c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY293041.1| Typha sp. Qiu 94061 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 101 bits (51), Expect = 6e-18 Identities = 177/219 (80%) Strand = Plus / Plus Query: 505 aagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgct 564 ||||||||||||||||| ||||| || | | |||||| | |||| ||||||| ||||| Sbjct: 106 aagaagacctttgtgaccgtgacagatgctagggggaataagaagactggggcctccgca 165 Query: 565 ggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaaca 624 || || |||||||| |||| ||||||||||||||| |||||||||| | ||||||||| Sbjct: 166 ggttgtttggaggaaagaaaagggcggtctcgtctttctcggtatgctgctgaagcaact 225 Query: 625 ggggaacacatggggcgagttgccagcaagattggcctcaagtcggtcgtcgtgaaggtg 684 | |||||| | |||||| ||||| ||||| || | ||||| || ||| |||| ||| Sbjct: 226 gcggaacatgtcgggcgatccgccagaaagatgggtttaaagtcagttgtcatgaaagtg 285 Query: 685 aaaggatactcctttttcaggaagaagaagaaggtgatc 723 ||||||| | | | ||||||||| |||||||| |||||| Sbjct: 286 aaaggatccacttatttcaggaaaaagaagaaagtgatc 324
>gb|AY293038.1| Hosta sp. Qiu 94191 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 93.7 bits (47), Expect = 1e-15 Identities = 176/219 (80%) Strand = Plus / Plus Query: 505 aagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgct 564 ||||||||||||||||| ||||| || | | |||||| | |||| ||||||| ||||| Sbjct: 106 aagaagacctttgtgaccgtgacagatgctagggggaataagaagactggggcctccgca 165 Query: 565 ggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaaca 624 || | |||||||| |||| || |||||||||||| |||||||||| | ||||||||| Sbjct: 166 ggttctttggaggaaagaaaaggtcggtctcgtctttctcggtatgctgctgaagcaact 225 Query: 625 ggggaacacatggggcgagttgccagcaagattggcctcaagtcggtcgtcgtgaaggtg 684 | |||||| |||||||| |||||| |||||||| | ||||| || || |||| ||| Sbjct: 226 gcggaacatgtggggcgatctgccagaaagattggtttgaagtcagttgtgatgaaagtg 285 Query: 685 aaaggatactcctttttcaggaagaagaagaaggtgatc 723 ||||||| | | | ||||||||| ||||| || |||||| Sbjct: 286 aaaggatccacttatttcaggaaaaagaaaaaagtgatc 324
>gb|AY293037.1| Pandanus veitchii small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 89.7 bits (45), Expect = 2e-14 Identities = 105/125 (84%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| || | | |||||| | |||| ||||||| |||||||| Sbjct: 109 aagacctttgtgaccgtgacagatgctagggggaataagaagactggggcctccgctggt 168 Query: 568 tgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaacaggg 627 || |||||||| |||| ||||||||||||||| |||||||||| | ||||||||| | | Sbjct: 169 tgtttggaggaaagaaaagggcggtctcgtctttctcggtatgctgctgaagcaactgcg 228 Query: 628 gaaca 632 ||||| Sbjct: 229 gaaca 233
>gb|AY293039.1| Disporum hookeri small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 87.7 bits (44), Expect = 8e-14 Identities = 173/216 (80%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| || | | |||||| | |||| ||||||| ||||| || Sbjct: 109 aagacctttgtgaccgtgacagatgctagggggaataagaagactggggcctccgcaggt 168 Query: 568 tgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaacaggg 627 || |||||||| |||| ||||||||||||||| |||||||||| | ||||||||| | | Sbjct: 169 tgtttggaggaaagaaaagggcggtctcgtctttctcggtatgctgctgaagcaactgcg 228 Query: 628 gaacacatggggcgagttgccagcaagattggcctcaagtcggtcgtcgtgaaggtgaaa 687 ||||| | |||||| ||||| ||||| || | ||||| || || |||| |||||| Sbjct: 229 gaacatgtcgggcgatccgccagaaagatgggtttgaagtcagttgtaatgaaagtgaaa 288 Query: 688 ggatactcctttttcaggaagaagaagaaggtgatc 723 ||||| | ||||||||||| ||||| || |||||| Sbjct: 289 ggatatacttttttcaggaaaaagaaaaaagtgatc 324
>gb|AY293042.1| Cocos nucifera small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 81.8 bits (41), Expect = 5e-12 Identities = 104/125 (83%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| || | | |||||| | ||| ||||||| ||||| || Sbjct: 109 aagacctttgtgaccgtgacagatgctagggggaataaaaagactggggcctccgcaggt 168 Query: 568 tgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaacaggg 627 || |||||||| |||||||||||||||||||| |||||||||| | ||||||||| | | Sbjct: 169 tgtttggaggaaagaaaggggcggtctcgtctttctcggtatgctgctgaagcaactgcg 228 Query: 628 gaaca 632 ||||| Sbjct: 229 gaaca 233
>gb|AY106491.1| Zea mays PCO082421 mRNA sequence Length = 526 Score = 79.8 bits (40), Expect = 2e-11 Identities = 130/160 (81%) Strand = Plus / Plus Query: 671 tcgtcgtgaaggtgaaaggatactcctttttcaggaagaagaagaaggtgatcatgggct 730 ||||| ||||||||||||| || || |||| ||||||||||||||||||| || ||| Sbjct: 116 tcgtcatgaaggtgaaaggggcttcgttcttcaagaagaagaagaaggtgatcctgagct 175 Query: 731 tcgcagatggtttcaggggcgaaagagtgagaaccccgtctcctatcatgtatgtccatg 790 || ||| || ||| | |||||||| ||||| || |||||||||||||| |||| | Sbjct: 176 tcagagaagggttccgaggcgaaagggtgagggaccaatctcctatcatgtacatccacg 235 Query: 791 acgtgacccagcttgcgcataatggatgccggctgcccaa 830 |||||||||||||| | || ||||| |||||||| ||||| Sbjct: 236 acgtgacccagcttcctcacaatgggtgccggctccccaa 275
>gb|AY293045.1| Dendrocalamus strictus small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 73.8 bits (37), Expect = 1e-09 Identities = 103/125 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| || | | |||||| | ||| ||||||| |||||||| Sbjct: 109 aagacctttgtgaccgtgacagatgctagggggaataaaaagactggggcctccgctggt 168 Query: 568 tgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaacaggg 627 || |||||||| |||| ||||||||||||||| |||| ||||| | ||||||||| | | Sbjct: 169 tgtttggaggaaagaaaagggcggtctcgtctttctcgatatgctgctgaagcaactgcg 228 Query: 628 gaaca 632 ||||| Sbjct: 229 gaaca 233
>gb|AY293044.1| Juncus sp. Qiu 94042 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 71.9 bits (36), Expect = 5e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 505 aagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgct 564 ||||||||||||||||| ||||| || | |||||| | |||| ||||||| ||||| Sbjct: 106 aagaagacctttgtgaccgtgacagatgcaggggggaataagaagactggggcctccgca 165 Query: 565 ggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatgccggtgaagcaaca 624 || || |||||||| |||| ||||||||||||||| | |||||||| | ||||||||| Sbjct: 166 ggttgtttggaggaaagaaaagggcggtctcgtctttcccggtatgctgctgaagcaact 225 Query: 625 ggggaaca 632 | |||||| Sbjct: 226 gcggaaca 233
>gb|AY293040.1| Dracaena fragrans small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 378 Score = 69.9 bits (35), Expect = 2e-08 Identities = 145/179 (81%), Gaps = 2/179 (1%) Strand = Plus / Plus Query: 546 gaaggctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcg 605 |||| ||||||| ||||| || | |||||||| |||| || |||||||||||| |||| Sbjct: 147 gaagactggggcctccgcaggttctttggaggaaagaaaaggtcggtctcgtctttctcg 206 Query: 606 gtatgccggtgaagcaacaggggaacacatggggcgagttgccagcaagattggcctcaa 665 |||||| | ||||||||| | |||||| |||||||| |||||| |||||||| | || Sbjct: 207 gtatgctgctgaagcaactgcggaacatgtggggcgatctgccagaaagattggtttgaa 266 Query: 666 gtcggtcgtcgtgaaggtgaaaggatactcctt-tttcaggaagaagaagaaggtgatc 723 ||| || || |||| |||||||||| || ||| ||||||||| ||||| || |||||| Sbjct: 267 gtcagttgtgatgaaagtgaaaggat-ctacttatttcaggaaaaagaaaaaagtgatc 324
>gb|AY293043.1| Tradescantia sp. Qiu 94150 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 363 Score = 61.9 bits (31), Expect = 5e-06 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand = Plus / Plus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaacacatggggcgagtt 645 ||||||||||||||| |||||||||| | ||||||||| | |||||| | |||||| Sbjct: 172 gggcggtctcgtctttctcggtatgctgctgaagcaactgcggaacatgtcgggcgatcc 231 Query: 646 gccagcaagattggcctcaagtcggtcgtcgtgaaggtgaaaggatactcctt-tttcag 704 ||||| ||||| || | ||||| || ||| |||| |||||||||| || ||| |||||| Sbjct: 232 gccagaaagatgggtttgaagtcagttgtcatgaaagtgaaaggat-ctacttatttcag 290 Query: 705 gaagaagaagaaggtgatc 723 ||| |||||||| |||||| Sbjct: 291 gaaaaagaagaaagtgatc 309
>gb|AY293019.1| Sanguinaria canadensis small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 801 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||| ||||| || || |||||||| |||| ||||||||||||||| ||||||||| Sbjct: 575 ctggggcctccgcaggttgtttggaggaaagaaaagggcggtctcgtctttctcggtatg 634 Query: 611 ccggtgaagc 620 | | |||||| Sbjct: 635 ctgctgaagc 644
>ref|NM_001056788.1| Oryza sativa (japonica cultivar-group) Os03g0385900 (Os03g0385900) mRNA, complete cds Length = 1611 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 663 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 722 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 723 tgtttggaggacaggaaagggcgctctcgtctt 755
>gb|AC146521.2| Oryza sativa chromosome 3 B1246D11 genomic sequence, complete sequence Length = 43277 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 26073 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 26132 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 26133 tgtttggaggacaggaaagggcgctctcgtctt 26165
>gb|AY293057.1| Betula papyrifera small subunit ribosomal protein (rps11) mitochondrial pseudogene, partial sequence Length = 408 Score = 58.0 bits (29), Expect = 8e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||||||||||||||| ||||||||| Sbjct: 152 ctggggcttccgcgggttgtttggaggaaatcaaagggcggtctcgtctttctcggtatg 211 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 212 ctgctgaagcaac 224
>gb|AY293030.1| Carpinus sp. Bergthorsson 0303 small subunit ribosomal protein (rps11) mitochondrial pseudogene, partial sequence Length = 379 Score = 58.0 bits (29), Expect = 8e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||||||||||||||| ||||||||| Sbjct: 147 ctggggcttccgcgggttgtttggaggaaatcaaagggcggtctcgtctttctcggtatg 206 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 207 ctgctgaagcaac 219
>gb|AY293029.1| Corylus sp. Bergthorsson 0302 small subunit ribosomal protein (rps11) mitochondrial pseudogene, partial sequence Length = 379 Score = 58.0 bits (29), Expect = 8e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||||||||||||||| ||||||||| Sbjct: 147 ctggggcttccgcgggttgtttggaggaaatcaaagggcggtctcgtctttctcggtatg 206 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 207 ctgctgaagcaac 219
>gb|AY293028.1| Betula nigra small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 384 Score = 58.0 bits (29), Expect = 8e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||||||||||||||| ||||||||| Sbjct: 152 ctggggcttccgcgggttgtttggaggaaatcaaagggcggtctcgtctttctcggtatg 211 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 212 ctgctgaagcaac 224
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 15155528 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 15155469 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 15155468 tgtttggaggacaggaaagggcgctctcgtctt 15155436
>dbj|AK073780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068M08, full insert sequence Length = 1270 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 638 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 697 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 698 tgtttggaggacaggaaagggcgctctcgtctt 730
>dbj|AK072987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F21, full insert sequence Length = 1612 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 664 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 723 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 724 tgtttggaggacaggaaagggcgctctcgtctt 756
>dbj|AK066831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L03, full insert sequence Length = 1161 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 638 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 697 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 698 tgtttggaggacaggaaagggcgctctcgtctt 730
>dbj|D85382.1| Oryza sativa (japonica cultivar-group) rps11 gene for mitochondrial ribosomal protein S11, complete cds Length = 2493 Score = 58.0 bits (29), Expect = 8e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 508 aagacctttgtgactgtgacggacgtcaaggggaacaggaaggctggggcttccgctggc 567 |||||||||||||| ||||| ||||| | |||||||| ||| | ||||| |||||||| Sbjct: 1120 aagacctttgtgaccgtgacagacgttagggggaacaaaaagaccggggcatccgctggt 1179 Query: 568 tgcttggaggatcgaaaggggcggtctcgtctt 600 || |||||||| | || ||||| ||||||||| Sbjct: 1180 tgtttggaggacaggaaagggcgctctcgtctt 1212
>ref|NM_001050089.1| Oryza sativa (japonica cultivar-group) Os01g0612100 (Os01g0612100) mRNA, complete cds Length = 774 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 495 gctcaaggggaagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctgg 554 ||||||| | || |||||||||||||| ||||| ||||| ||||||||| ||| | || Sbjct: 423 gctcaagagaaacaagacctttgtgaccgtgacagacgttcgggggaacagaaagaccgg 482 Query: 555 ggcttccgctggctgcttggagga 578 ||| |||||||| || |||||||| Sbjct: 483 ggcatccgctggttgtttggagga 506
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 495 gctcaaggggaagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctgg 554 ||||||| | || |||||||||||||| ||||| ||||| ||||||||| ||| | || Sbjct: 24246497 gctcaagagaaacaagacctttgtgaccgtgacagacgttcgggggaacagaaagaccgg 24246556 Query: 555 ggcttccgctggctgcttggagga 578 ||| |||||||| || |||||||| Sbjct: 24246557 ggcatccgctggttgtttggagga 24246580
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 495 gctcaaggggaagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctgg 554 ||||||| | || |||||||||||||| ||||| ||||| ||||||||| ||| | || Sbjct: 71061 gctcaagagaaacaagacctttgtgaccgtgacagacgttcgggggaacagaaagaccgg 71120 Query: 555 ggcttccgctggctgcttggagga 578 ||| |||||||| || |||||||| Sbjct: 71121 ggcatccgctggttgtttggagga 71144
>dbj|D85195.1| Oryza sativa (japonica cultivar-group) DNA containing a sequence similar to ribosomal protein s11 Length = 1941 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 495 gctcaaggggaagaagacctttgtgactgtgacggacgtcaaggggaacaggaaggctgg 554 ||||||| | || |||||||||||||| ||||| ||||| ||||||||| ||| | || Sbjct: 648 gctcaagagaaacaagacctttgtgaccgtgacagacgttcgggggaacagaaagaccgg 707 Query: 555 ggcttccgctggctgcttggagga 578 ||| |||||||| || |||||||| Sbjct: 708 ggcatccgctggttgtttggagga 731
>gb|AY293020.1| Cissampelos pareira small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 813 Score = 52.0 bits (26), Expect = 0.005 Identities = 64/74 (86%), Gaps = 2/74 (2%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggagga-tcgaaaggggcggtctcgtcttgctcggtat 609 ||||||| |||||||| || |||||||| | ||||||| ||||||||||| |||||||| Sbjct: 569 ctggggcctccgctggttgtttggaggaattcaaagggg-ggtctcgtctttctcggtat 627 Query: 610 gccggtgaagcaac 623 || | ||||||||| Sbjct: 628 gctgctgaagcaac 641
>gb|AY293035.1| Tetracentron sinense small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 805 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 561 ctggggcttccgcaggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 620 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 621 ctgctgaagcaac 633
>gb|AY293034.1| Trochodendron aralioides small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 805 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 561 ctggggcttccgcaggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 620 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 621 ctgctgaagcaac 633
>gb|AY293033.1| Platanus occidentalis small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 811 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 567 ctggggcttccgcaggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 626 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 627 ctgctgaagcaac 639
>gb|AY293032.1| Grevillea robusta small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 804 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 560 ctggggcttccgcaggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 619 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 620 ctgctgaagcaac 632
>gb|AY293031.1| Nelumbo nucifera small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 797 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||||||||| || || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 553 ctggggcttccgcaggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 612 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 613 ctgctgaagcaac 625
>gb|AY293017.1| Eschscholzia californica small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 396 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||| ||||| || || |||||||| ||| ||| ||||||||||| ||||||||| Sbjct: 152 ctggggcctccgcaggttgtttggaggaaataaaaggggggtctcgtctttctcggtatg 211 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 212 ctgctgaagcaac 224
>gb|AY293016.1| Stylophorum diphyllum small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 396 Score = 50.1 bits (25), Expect = 0.018 Identities = 61/73 (83%) Strand = Plus / Plus Query: 551 ctggggcttccgctggctgcttggaggatcgaaaggggcggtctcgtcttgctcggtatg 610 ||||||| |||||||| || |||||||| || ||| ||||||||||| ||||||||| Sbjct: 152 ctggggcctccgctggttgtttggaggaaatcaaaggggggtctcgtctttctcggtatg 211 Query: 611 ccggtgaagcaac 623 | | ||||||||| Sbjct: 212 ctgctgaagcaac 224
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Minus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaaca 632 ||||||||||||||| |||| ||||| | ||||||||| | |||||| Sbjct: 250359 gggcggtctcgtctttctcgatatgctgctgaagcaactgcggaaca 250313
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Minus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaaca 632 ||||||||||||||| |||| ||||| | ||||||||| | |||||| Sbjct: 250492 gggcggtctcgtctttctcgatatgctgctgaagcaactgcggaaca 250446
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Minus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaaca 632 ||||||||||||||| |||| ||||| | ||||||||| | |||||| Sbjct: 250495 gggcggtctcgtctttctcgatatgctgctgaagcaactgcggaaca 250449
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Minus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaaca 632 ||||||||||||||| |||| ||||| | ||||||||| | |||||| Sbjct: 251313 gggcggtctcgtctttctcgatatgctgctgaagcaactgcggaaca 251267
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 92 cggcgatggcggcgagggcgctt 114 ||||||||||||||||||||||| Sbjct: 19762646 cggcgatggcggcgagggcgctt 19762624
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 92 cggcgatggcggcgagggcgctt 114 ||||||||||||||||||||||| Sbjct: 119404 cggcgatggcggcgagggcgctt 119382
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 92 cggcgatggcggcgagggcgctt 114 ||||||||||||||||||||||| Sbjct: 71197 cggcgatggcggcgagggcgctt 71175
>dbj|D85128.1| Oryza sativa (japonica cultivar-group) mitochondrial DNA for ribosomal protein s11, pseudogene Length = 898 Score = 46.1 bits (23), Expect = 0.29 Identities = 41/47 (87%) Strand = Plus / Plus Query: 586 gggcggtctcgtcttgctcggtatgccggtgaagcaacaggggaaca 632 ||||||||||||||| |||| ||||| | ||||||||| | |||||| Sbjct: 438 gggcggtctcgtctttctcgatatgctgctgaagcaactgcggaaca 484
>gb|AY293027.1| Hydrastis canadensis small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 396 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 191 ggtctcgtctttctcggtatgctgctgaagcaac 224
>gb|AY293021.1| Cocculus carolinus small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 813 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 608 ggtctcgtctttctcggtatgctgctgaagcaac 641
>gb|AY293018.1| Bocconia frutescens small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 826 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 621 ggtctcgtctttctcggtatgctgctgaagcaac 654
>gb|AY293013.1| Ranzania japonica small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 402 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 197 ggtctcgtctttctcggtatgctgctgaagcaac 230
>gb|AY293012.1| Lonicera sp. Bergthorsson 0301 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 810 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 605 ggtctcgtctttctcggtatgctgctgaagcaac 638
>gb|AY293011.1| Weigela hortensis small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 819 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 614 ggtctcgtctttctcggtatgctgctgaagcaac 647
>gb|AY293010.1| Kolkwitzia amabilis small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 393 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 188 ggtctcgtctttctcggtatgctgctgaagcaac 221
>gb|AY293009.1| Abelia x grandiflora small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 393 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 188 ggtctcgtctttctcggtatgctgctgaagcaac 221
>gb|AY293008.1| Symphoricarpos albus small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 393 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 188 ggtctcgtctttctcggtatgctgctgaagcaac 221
>gb|AY293007.1| Diphylleia grayi small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 402 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 197 ggtctcgtctttctcggtatgctgctgaagcaac 230
>gb|AY293006.1| Achlys triphylla small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 402 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 197 ggtctcgtctttctcggtatgctgctgaagcaac 230
>gb|AY293005.1| Caulophyllum thalictroides small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product Length = 402 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 590 ggtctcgtcttgctcggtatgccggtgaagcaac 623 ||||||||||| |||||||||| | ||||||||| Sbjct: 197 ggtctcgtctttctcggtatgctgctgaagcaac 230
>ref|NM_062807.3| Caenorhabditis elegans associated with RAN (nuclear import/export) function family member (ran-5) (ran-5) mRNA, complete cds Length = 1279 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 703 aggaagaagaagaaggtgatca 724 |||||||||||||||||||||| Sbjct: 886 aggaagaagaagaaggtgatca 907
>gb|U23510.3| Caenorhabditis elegans cosmid R12C12, complete sequence Length = 40506 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 703 aggaagaagaagaaggtgatca 724 |||||||||||||||||||||| Sbjct: 28036 aggaagaagaagaaggtgatca 28057
>ref|XM_001173910.1| PREDICTED: Pan troglodytes hypothetical protein LOC750335 (LOC750335), mRNA Length = 1561 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 gccgccgccgccgcggtcacg 59 ||||||||||||||||||||| Sbjct: 693 gccgccgccgccgcggtcacg 673
>gb|CP000449.1| Maricaulis maris MCS10, complete genome Length = 3368780 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 gccgccgccgccgcggtcacg 59 ||||||||||||||||||||| Sbjct: 1064576 gccgccgccgccgcggtcacg 1064556
>ref|NM_022462.3| Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 2, mRNA Length = 5908 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 aggaagaagaagaaggtgatc 723 ||||||||||||||||||||| Sbjct: 2939 aggaagaagaagaaggtgatc 2919
>ref|NM_152794.2| Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 1, mRNA Length = 5864 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 aggaagaagaagaaggtgatc 723 ||||||||||||||||||||| Sbjct: 2895 aggaagaagaagaaggtgatc 2875
>ref|NM_152795.2| Homo sapiens hypoxia inducible factor 3, alpha subunit (HIF3A), transcript variant 3, mRNA Length = 5850 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 aggaagaagaagaaggtgatc 723 ||||||||||||||||||||| Sbjct: 2881 aggaagaagaagaaggtgatc 2861
>gb|AC005751.1| Homo sapiens chromosome 16, BAC clone 375G12 (LANL), complete sequence Length = 162822 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 gccgccgccgccgcggtcacg 59 ||||||||||||||||||||| Sbjct: 156991 gccgccgccgccgcggtcacg 156971
>gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1675_H07, complete sequence Length = 135294 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 acggcgatggcggcgagggcgcttg 115 |||||||||| |||||||||||||| Sbjct: 111841 acggcgatggtggcgagggcgcttg 111817
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 acggcgatggcggcgagggcgcttg 115 |||||||||| |||||||||||||| Sbjct: 62905 acggcgatggtggcgagggcgcttg 62881
>gb|AC009135.12| Homo sapiens chromosome 16 clone RP11-509E10, complete sequence Length = 221640 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 gccgccgccgccgcggtcacg 59 ||||||||||||||||||||| Sbjct: 95822 gccgccgccgccgcggtcacg 95842
>emb|CR926467.10| Zebrafish DNA sequence from clone DKEYP-20G2 in linkage group 5, complete sequence Length = 153796 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1003 ttgccagacaaaacattttgt 1023 ||||||||||||||||||||| Sbjct: 82379 ttgccagacaaaacattttgt 82399
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tcggtctgccgccgccgccgc 52 ||||||||||||||||||||| Sbjct: 27225047 tcggtctgccgccgccgccgc 27225067
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 acggcgatggcggcgagggcgcttg 115 |||||||||| |||||||||||||| Sbjct: 15407884 acggcgatggtggcgagggcgcttg 15407860
>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5 Length = 335050 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1148 tttgcaagtgtaaaagtttgaagtt 1172 |||||||||||||| |||||||||| Sbjct: 172872 tttgcaagtgtaaatgtttgaagtt 172848
>emb|CR856018.10| Human DNA sequence from clone WI2-8974A5 on chromosome X, complete sequence Length = 37323 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 caaggggaacaggaaggctgg 554 ||||||||||||||||||||| Sbjct: 22711 caaggggaacaggaaggctgg 22731
>ref|NM_001006424.1| Gallus gallus solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 (SLC9A3R1), mRNA emb|AJ719570.1| Gallus gallus mRNA for hypothetical protein, clone 3g21 Length = 1811 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gggctcgccggccgagcgctc 135 ||||||||||||||||||||| Sbjct: 167 gggctcgccggccgagcgctc 187
>emb|CR858235.1| Pongo pygmaeus mRNA; cDNA DKFZp469K0718 (from clone DKFZp469K0718) Length = 3991 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tctgccgccgccgccgcggtc 56 ||||||||||||||||||||| Sbjct: 140 tctgccgccgccgccgcggtc 120
>emb|BX323592.7| Zebrafish DNA sequence from clone CH211-213I23 in linkage group 14, complete sequence Length = 120180 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1005 gccagacaaaacattttgtca 1025 ||||||||||||||||||||| Sbjct: 26856 gccagacaaaacattttgtca 26876
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tcggtctgccgccgccgccgc 52 ||||||||||||||||||||| Sbjct: 82063 tcggtctgccgccgccgccgc 82083
>emb|CR353503.1| Gallus gallus finished cDNA, clone ChEST127h22 Length = 2144 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gggctcgccggccgagcgctc 135 ||||||||||||||||||||| Sbjct: 155 gggctcgccggccgagcgctc 175
>emb|BX470195.10| Mouse DNA sequence from clone RP23-4K22 on chromosome X, complete sequence Length = 213684 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 958 atggaagtatttatgaatacttatt 982 |||| |||||||||||||||||||| Sbjct: 61004 atgggagtatttatgaatacttatt 61028
>gb|AC007193.1|AC007193 Homo sapiens chromosome 19, BAC 82621 (CIT-B-139a18), complete sequence Length = 146180 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 aggaagaagaagaaggtgatc 723 ||||||||||||||||||||| Sbjct: 85678 aggaagaagaagaaggtgatc 85658 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 205,663,780 Number of extensions: 13357237 Number of successful extensions: 443158 Number of sequences better than 10.0: 77 Number of HSP's gapped: 443144 Number of HSP's successfully gapped: 77 Length of query: 1188 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1165 Effective length of database: 18,503,978,556 Effective search space: 21557135017740 Effective search space used: 21557135017740 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
