ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf37l22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_538678.2| PREDICTED: Canis familiaris similar to CG3520-P... 44 0.29
2dbj|AB108174.1| Phleum pratense DNA, SSR, microsatellite A08-D10 44 0.29
3emb|CT827817.8| Pig DNA sequence from clone CH242-113C19 on chro... 40 4.5
4ref|XM_396605.3| PREDICTED: Apis mellifera similar to CG2321-PA ... 40 4.5
5gb|AC146819.19| Medicago truncatula clone mth2-176k6, complete s... 40 4.5
6gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC... 40 4.5
7gb|AC023425.20| Homo sapiens 12 BAC RP11-350G2 (Roswell Park Can... 40 4.5
8gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, comp... 40 4.5
9gb|AC012670.7| Homo sapiens BAC clone RP11-514A9 from 2, complet... 40 4.5
10gb|AC074110.5|AC074110 Arabidopsis thaliana chromosome 1 BAC T18... 40 4.5
11gb|AC079674.4|AC079674 Arabidopsis thaliana chromosome 1 BAC F10... 40 4.5
12gb|AF239839.1|AF239839 Xenopus laevis noggin gene, partial sequence 40 4.5
13gb|AY104543.1| Zea mays PCO131788 mRNA sequence 40 4.5
14emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chr... 40 4.5

>ref|XM_538678.2| PREDICTED: Canis familiaris similar to CG3520-PA (LOC481557), mRNA
          Length = 5504
 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 156 tttagcatattcctgtaactgg 177
           ||||||||||||||||||||||
Sbjct: 665 tttagcatattcctgtaactgg 644



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>dbj|AB108174.1| Phleum pratense DNA, SSR, microsatellite A08-D10
          Length = 605

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                 
Query: 64  gagaaaacgcaaa-gactctgcgtttcatttcattgaa 100
           ||||||||||||| || | |||||||||||||||||||
Sbjct: 176 gagaaaacgcaaaagaatttgcgtttcatttcattgaa 213



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>emb|CT827817.8| Pig DNA sequence from clone CH242-113C19 on chromosome 7, complete
              sequence
          Length = 225292

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    tctgaggaggaggctcacat 147
              ||||||||||||||||||||
Sbjct: 169377 tctgaggaggaggctcacat 169396



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>ref|XM_396605.3| PREDICTED: Apis mellifera similar to CG2321-PA (LOC413154), mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 tatattattactttctgtat 204
           ||||||||||||||||||||
Sbjct: 894 tatattattactttctgtat 875



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>gb|AC146819.19| Medicago truncatula clone mth2-176k6, complete sequence
          Length = 127131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tggcacaccttatattatta 194
             ||||||||||||||||||||
Sbjct: 86521 tggcacaccttatattatta 86502



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>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence,
             complete sequence
          Length = 96540

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   acatgttattcttttagcat 163
             ||||||||||||||||||||
Sbjct: 11980 acatgttattcttttagcat 11999



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>gb|AC023425.20| Homo sapiens 12 BAC RP11-350G2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181829

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    tattcttttagcatattcctgtaa 173
              |||||||||| |||||||||||||
Sbjct: 171030 tattcttttaacatattcctgtaa 171053



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>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence
          Length = 186185

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     tggagatacttcagagtataataa 33
              |||||||||||||||||| |||||
Sbjct: 116938 tggagatacttcagagtaaaataa 116915



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>gb|AC012670.7| Homo sapiens BAC clone RP11-514A9 from 2, complete sequence
          Length = 194725

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    tctagtctagaacaaaacat 234
              ||||||||||||||||||||
Sbjct: 111628 tctagtctagaacaaaacat 111609



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>gb|AC074110.5|AC074110 Arabidopsis thaliana chromosome 1 BAC T18C15 genomic sequence, complete
             sequence
          Length = 20509

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tattcttttagcatattcct 169
             ||||||||||||||||||||
Sbjct: 13082 tattcttttagcatattcct 13063



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>gb|AC079674.4|AC079674 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete
             sequence
          Length = 48940

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tattcttttagcatattcct 169
             ||||||||||||||||||||
Sbjct: 44182 tattcttttagcatattcct 44201



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>gb|AF239839.1|AF239839 Xenopus laevis noggin gene, partial sequence
          Length = 1600

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 catgttattcttttagcata 164
           ||||||||||||||||||||
Sbjct: 365 catgttattcttttagcata 384



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>gb|AY104543.1| Zea mays PCO131788 mRNA sequence
          Length = 1707

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   ggagatacttcagagtataa 30
            ||||||||||||||||||||
Sbjct: 1323 ggagatacttcagagtataa 1342



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>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete
              sequence
          Length = 227165

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    ctttctgtatgaggcaactttcta 218
              ||||||||||||||||| ||||||
Sbjct: 197586 ctttctgtatgaggcaattttcta 197609


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 49,642,818
Number of extensions: 2732865
Number of successful extensions: 184697
Number of sequences better than 10.0: 14
Number of HSP's gapped: 184696
Number of HSP's successfully gapped: 14
Length of query: 316
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 294
Effective length of database: 18,508,616,841
Effective search space: 5441533351254
Effective search space used: 5441533351254
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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