ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf46a05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR855197.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence Length = 127419 Score = 196 bits (99), Expect = 2e-46 Identities = 225/267 (84%) Strand = Plus / Minus Query: 145 cctcccgctcccgccggggccgcgggcgctgccgttcctcggcaacatcttctacacgag 204 |||||||||||||||||||||||||| ||||||||| | ||||||||| | | || || Sbjct: 1941 cctcccgctcccgccggggccgcggggtctgccgttcgttggcaacatcctgcataccag 1882 Query: 205 agacatgacccaccggggcctggcaaggctgtccgcgcgctacggcggcctccttcacct 264 |||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| Sbjct: 1881 cgacatgacccaccgtggcctggctcagctcgcctcgcgctacggcggcctcctccacct 1822 Query: 265 tcgcgttggccacctgagcaccgtggtcgtgtcgacgccggagatagcccgtctggtgct 324 ||| | |||| ||| |||||||||||||||||||||| ||||| ||||| ||||| || Sbjct: 1821 ccgcctcggccgcctccgcaccgtggtcgtgtcgacgccagagatggcccggctggtcct 1762 Query: 325 ccaggtgaacgaccgcgccttcgccaatcgcccggccagcgggccgattgcctacctcac 384 ||| || |||||||||||||||||| | |||||| ||| || | | || | ||||||||| Sbjct: 1761 ccatgtaaacgaccgcgccttcgccgaccgcccgaccaccgcggccatcgactacctcac 1702 Query: 385 ctacggccgcgcggacatggtgttcgc 411 |||| |||||| |||||||||||||| Sbjct: 1701 atacgaccgcgccgacatggtgttcgc 1675 Score = 97.6 bits (49), Expect = 1e-16 Identities = 154/189 (81%) Strand = Plus / Minus Query: 416 tacggacccttctggcgcgagatgcggaagctgtgcgtccacaggctctttagccaccgt 475 ||||| ||||| |||||| || |||||||||||||| || |||||||||| | || || Sbjct: 1458 tacgggcccttgtggcgccagctgcggaagctgtgcatcaacaggctcttcaaccggcgc 1399 Query: 476 cgggccgcgtcatgggccgccgtccacgacgaggtcgacaacctgatccgcgacgttgcc 535 ||||||||||| ||||| || |||||||||| |||||| | ||| | || || || || Sbjct: 1398 cgggccgcgtcgtgggcagctgtccacgacggggtcgatagcctcctgcgggaggtgacc 1339 Query: 536 aggtacactggctcggtggtcaatctcggcgagctcgtgttcaacatgtcgatgaacatc 595 | | ||| ||| |||||||||| ||||||||||||||||| |||||||||||| ||| Sbjct: 1338 aagaacagcggcgcggtggtcaacgtcggcgagctcgtgttcggcatgtcgatgaaaatc 1279 Query: 596 acgctccgg 604 || |||||| Sbjct: 1278 actctccgg 1270 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Minus Query: 1426 catgcagctgggaatgcacgcggtggaaatggcactggcgcggctgctgcatggcttcga 1485 |||||||||||| |||| ||||||||| | |||||||| ||||||| || |||||||| Sbjct: 1237 catgcagctggggatgctcgcggtggagctagcactggccaggctgctccacggcttcga 1178 Query: 1486 ctgga 1490 ||||| Sbjct: 1177 ctgga 1173
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 196 bits (99), Expect = 2e-46 Identities = 225/267 (84%) Strand = Plus / Minus Query: 145 cctcccgctcccgccggggccgcgggcgctgccgttcctcggcaacatcttctacacgag 204 |||||||||||||||||||||||||| ||||||||| | ||||||||| | | || || Sbjct: 26962663 cctcccgctcccgccggggccgcggggtctgccgttcgttggcaacatcctgcataccag 26962604 Query: 205 agacatgacccaccggggcctggcaaggctgtccgcgcgctacggcggcctccttcacct 264 |||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| Sbjct: 26962603 cgacatgacccaccgtggcctggctcagctcgcctcgcgctacggcggcctcctccacct 26962544 Query: 265 tcgcgttggccacctgagcaccgtggtcgtgtcgacgccggagatagcccgtctggtgct 324 ||| | |||| ||| |||||||||||||||||||||| ||||| ||||| ||||| || Sbjct: 26962543 ccgcctcggccgcctccgcaccgtggtcgtgtcgacgccagagatggcccggctggtcct 26962484 Query: 325 ccaggtgaacgaccgcgccttcgccaatcgcccggccagcgggccgattgcctacctcac 384 ||| || |||||||||||||||||| | |||||| ||| || | | || | ||||||||| Sbjct: 26962483 ccatgtaaacgaccgcgccttcgccgaccgcccgaccaccgcggccatcgactacctcac 26962424 Query: 385 ctacggccgcgcggacatggtgttcgc 411 |||| |||||| |||||||||||||| Sbjct: 26962423 atacgaccgcgccgacatggtgttcgc 26962397 Score = 97.6 bits (49), Expect = 1e-16 Identities = 154/189 (81%) Strand = Plus / Minus Query: 416 tacggacccttctggcgcgagatgcggaagctgtgcgtccacaggctctttagccaccgt 475 ||||| ||||| |||||| || |||||||||||||| || |||||||||| | || || Sbjct: 26962179 tacgggcccttgtggcgccagctgcggaagctgtgcatcaacaggctcttcaaccggcgc 26962120 Query: 476 cgggccgcgtcatgggccgccgtccacgacgaggtcgacaacctgatccgcgacgttgcc 535 ||||||||||| ||||| || |||||||||| |||||| | ||| | || || || || Sbjct: 26962119 cgggccgcgtcgtgggcagctgtccacgacggggtcgatagcctcctgcgggaggtgacc 26962060 Query: 536 aggtacactggctcggtggtcaatctcggcgagctcgtgttcaacatgtcgatgaacatc 595 | | ||| ||| |||||||||| ||||||||||||||||| |||||||||||| ||| Sbjct: 26962059 aagaacagcggcgcggtggtcaacgtcggcgagctcgtgttcggcatgtcgatgaaaatc 26962000 Query: 596 acgctccgg 604 || |||||| Sbjct: 26961999 actctccgg 26961991 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Minus Query: 1426 catgcagctgggaatgcacgcggtggaaatggcactggcgcggctgctgcatggcttcga 1485 |||||||||||| |||| ||||||||| | |||||||| ||||||| || |||||||| Sbjct: 26961958 catgcagctggggatgctcgcggtggagctagcactggccaggctgctccacggcttcga 26961899 Query: 1486 ctgga 1490 ||||| Sbjct: 26961898 ctgga 26961894 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1392 tgccgttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| ||||||||||||||||||| Sbjct: 1767231 tgccgttcggggcggggcggaggtcgtgccc 1767201 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 90860 tcatcaacgtgtgggccatcgggcg 90836
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 196 bits (99), Expect = 2e-46 Identities = 225/267 (84%) Strand = Plus / Minus Query: 145 cctcccgctcccgccggggccgcgggcgctgccgttcctcggcaacatcttctacacgag 204 |||||||||||||||||||||||||| ||||||||| | ||||||||| | | || || Sbjct: 30363 cctcccgctcccgccggggccgcggggtctgccgttcgttggcaacatcctgcataccag 30304 Query: 205 agacatgacccaccggggcctggcaaggctgtccgcgcgctacggcggcctccttcacct 264 |||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| Sbjct: 30303 cgacatgacccaccgtggcctggctcagctcgcctcgcgctacggcggcctcctccacct 30244 Query: 265 tcgcgttggccacctgagcaccgtggtcgtgtcgacgccggagatagcccgtctggtgct 324 ||| | |||| ||| |||||||||||||||||||||| ||||| ||||| ||||| || Sbjct: 30243 ccgcctcggccgcctccgcaccgtggtcgtgtcgacgccagagatggcccggctggtcct 30184 Query: 325 ccaggtgaacgaccgcgccttcgccaatcgcccggccagcgggccgattgcctacctcac 384 ||| || |||||||||||||||||| | |||||| ||| || | | || | ||||||||| Sbjct: 30183 ccatgtaaacgaccgcgccttcgccgaccgcccgaccaccgcggccatcgactacctcac 30124 Query: 385 ctacggccgcgcggacatggtgttcgc 411 |||| |||||| |||||||||||||| Sbjct: 30123 atacgaccgcgccgacatggtgttcgc 30097 Score = 97.6 bits (49), Expect = 1e-16 Identities = 154/189 (81%) Strand = Plus / Minus Query: 416 tacggacccttctggcgcgagatgcggaagctgtgcgtccacaggctctttagccaccgt 475 ||||| ||||| |||||| || |||||||||||||| || |||||||||| | || || Sbjct: 29879 tacgggcccttgtggcgccagctgcggaagctgtgcatcaacaggctcttcaaccggcgc 29820 Query: 476 cgggccgcgtcatgggccgccgtccacgacgaggtcgacaacctgatccgcgacgttgcc 535 ||||||||||| ||||| || |||||||||| |||||| | ||| | || || || || Sbjct: 29819 cgggccgcgtcgtgggcagctgtccacgacggggtcgatagcctcctgcgggaggtgacc 29760 Query: 536 aggtacactggctcggtggtcaatctcggcgagctcgtgttcaacatgtcgatgaacatc 595 | | ||| ||| |||||||||| ||||||||||||||||| |||||||||||| ||| Sbjct: 29759 aagaacagcggcgcggtggtcaacgtcggcgagctcgtgttcggcatgtcgatgaaaatc 29700 Query: 596 acgctccgg 604 || |||||| Sbjct: 29699 actctccgg 29691 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Minus Query: 1426 catgcagctgggaatgcacgcggtggaaatggcactggcgcggctgctgcatggcttcga 1485 |||||||||||| |||| ||||||||| | |||||||| ||||||| || |||||||| Sbjct: 29658 catgcagctggggatgctcgcggtggagctagcactggccaggctgctccacggcttcga 29599 Query: 1486 ctgga 1490 ||||| Sbjct: 29598 ctgga 29594
>ref|NM_001071578.1| Oryza sativa (japonica cultivar-group) Os10g0512400 (Os10g0512400) mRNA, complete cds Length = 2088 Score = 113 bits (57), Expect = 2e-21 Identities = 78/85 (91%) Strand = Plus / Plus Query: 369 cgattgcctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttct 428 |||| |||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| Sbjct: 455 cgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttct 514 Query: 429 ggcgcgagatgcggaagctgtgcgt 453 ||||| ||||| ||||||||||||| Sbjct: 515 ggcgccagatgaggaagctgtgcgt 539 Score = 48.1 bits (24), Expect = 0.11 Identities = 63/76 (82%) Strand = Plus / Plus Query: 1160 aaggagaccctccgcgtgcacccgcccggcccgctcctccagcacgaggccgccgaggac 1219 |||||||| |||||| | ||||||||| ||| |||||| |||||| |||||| ||| Sbjct: 1261 aaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgac 1320 Query: 1220 tgcatcgtcgccggct 1235 ||| |||||||||||| Sbjct: 1321 tgcctcgtcgccggct 1336 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 845 gacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||| |||| |||||| || ||||||| Sbjct: 925 gacgccgacatggtcgacgacatgctcgcgttcctcg 961 Score = 42.1 bits (21), Expect = 6.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 959 aacatcaaggccaccattatggatgtgatgatcggtgggac 999 ||||||||||||| ||| ||||| |||||| |||| ||||| Sbjct: 1060 aacatcaaggccatcatcatggacgtgatgttcggggggac 1100
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 113 bits (57), Expect = 2e-21 Identities = 78/85 (91%) Strand = Plus / Minus Query: 369 cgattgcctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttct 428 |||| |||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| Sbjct: 67745 cgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttct 67686 Query: 429 ggcgcgagatgcggaagctgtgcgt 453 ||||| ||||| ||||||||||||| Sbjct: 67685 ggcgccagatgaggaagctgtgcgt 67661 Score = 48.1 bits (24), Expect = 0.11 Identities = 63/76 (82%) Strand = Plus / Minus Query: 1160 aaggagaccctccgcgtgcacccgcccggcccgctcctccagcacgaggccgccgaggac 1219 |||||||| |||||| | ||||||||| ||| |||||| |||||| |||||| ||| Sbjct: 62283 aaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgac 62224 Query: 1220 tgcatcgtcgccggct 1235 ||| |||||||||||| Sbjct: 62223 tgcctcgtcgccggct 62208 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 845 gacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||| |||| |||||| || ||||||| Sbjct: 67275 gacgccgacatggtcgacgacatgctcgcgttcctcg 67239
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 113 bits (57), Expect = 2e-21 Identities = 78/85 (91%) Strand = Plus / Minus Query: 369 cgattgcctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttct 428 |||| |||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| Sbjct: 19215401 cgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttct 19215342 Query: 429 ggcgcgagatgcggaagctgtgcgt 453 ||||| ||||| ||||||||||||| Sbjct: 19215341 ggcgccagatgaggaagctgtgcgt 19215317 Score = 48.1 bits (24), Expect = 0.11 Identities = 63/76 (82%) Strand = Plus / Minus Query: 1160 aaggagaccctccgcgtgcacccgcccggcccgctcctccagcacgaggccgccgaggac 1219 |||||||| |||||| | ||||||||| ||| |||||| |||||| |||||| ||| Sbjct: 19209939 aaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgac 19209880 Query: 1220 tgcatcgtcgccggct 1235 ||| |||||||||||| Sbjct: 19209879 tgcctcgtcgccggct 19209864 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 845 gacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||| |||| |||||| || ||||||| Sbjct: 19214931 gacgccgacatggtcgacgacatgctcgcgttcctcg 19214895
>dbj|AK067847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124D03, full insert sequence Length = 2090 Score = 113 bits (57), Expect = 2e-21 Identities = 78/85 (91%) Strand = Plus / Plus Query: 369 cgattgcctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttct 428 |||| |||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| Sbjct: 456 cgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttct 515 Query: 429 ggcgcgagatgcggaagctgtgcgt 453 ||||| ||||| ||||||||||||| Sbjct: 516 ggcgcaagatgaggaagctgtgcgt 540 Score = 48.1 bits (24), Expect = 0.11 Identities = 63/76 (82%) Strand = Plus / Plus Query: 1160 aaggagaccctccgcgtgcacccgcccggcccgctcctccagcacgaggccgccgaggac 1219 |||||||| |||||| | ||||||||| ||| |||||| |||||| |||||| ||| Sbjct: 1262 aaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgac 1321 Query: 1220 tgcatcgtcgccggct 1235 ||| |||||||||||| Sbjct: 1322 tgcctcgtcgccggct 1337 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 845 gacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||| |||| |||||| || ||||||| Sbjct: 926 gacgccgacatggtcgacgacatgctcgcgttcctcg 962 Score = 42.1 bits (21), Expect = 6.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 959 aacatcaaggccaccattatggatgtgatgatcggtgggac 999 ||||||||||||| ||| ||||| |||||| |||| ||||| Sbjct: 1061 aacatcaaggccatcatcatggacgtgatgttcggggggac 1101
>ref|NM_001055267.1| Oryza sativa (japonica cultivar-group) Os03g0112900 (Os03g0112900) mRNA, complete cds Length = 1560 Score = 79.8 bits (40), Expect = 3e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 1381 cttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccat 1428 |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1332 cttcgagctcctgccgttcgggtcggggcggagggcgtgccccgccat 1379 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Plus Query: 374 gcctacctcacctacggccgcgcggacatgg 404 ||||||||||||||||||||||| ||||||| Sbjct: 346 gcctacctcacctacggccgcgccgacatgg 376 Score = 52.0 bits (26), Expect = 0.007 Identities = 35/38 (92%) Strand = Plus / Plus Query: 844 ggacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||||||||| |||||| || ||||||| Sbjct: 801 ggacgccgacatggtggacgacatgctcgcgttcctcg 838
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 79.8 bits (40), Expect = 3e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 375 cctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcg 434 ||||||||||||||| ||| || ||||||||||| || || ||||| ||||||||||| Sbjct: 105773 cctacctcacctacgaccgagccgacatggtgtttgcccactacgggcccttctggcgtc 105714 Query: 435 agatgcggaagctgtgcgtc 454 ||||||| |||||||||||| Sbjct: 105713 agatgcgcaagctgtgcgtc 105694 Score = 50.1 bits (25), Expect = 0.027 Identities = 34/37 (91%) Strand = Plus / Minus Query: 844 ggacgccgacatggtggacggcatgctggccttcctc 880 ||||||||||||||| ||||||||||| || |||||| Sbjct: 105295 ggacgccgacatggtagacggcatgctcgcgttcctc 105259
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 79.8 bits (40), Expect = 3e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 1381 cttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccat 1428 |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 704943 cttcgagctcctgccgttcgggtcggggcggagggcgtgccccgccat 704896 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||| | ||||||||||||||||| ||||||||||| Sbjct: 17146844 gtgaaggaggcgctccgcgtgcacccgccgggcccgctcct 17146804 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||||||||||||||||||||||||| Sbjct: 35566952 cacttcgagctcctgccgttcgggtcggggcgg 35566984 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 374 gcctacctcacctacggccgcgcggacatgg 404 ||||||||||||||||||||||| ||||||| Sbjct: 706004 gcctacctcacctacggccgcgccgacatgg 705974 Score = 52.0 bits (26), Expect = 0.007 Identities = 35/38 (92%) Strand = Plus / Minus Query: 844 ggacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||||||||| |||||| || ||||||| Sbjct: 705549 ggacgccgacatggtggacgacatgctcgcgttcctcg 705512 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1386 agctcctgccgttcgggtcggggcgg 1411 |||| ||||||||||||||||||||| Sbjct: 25025067 agctgctgccgttcgggtcggggcgg 25025042
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 79.8 bits (40), Expect = 3e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 1381 cttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccat 1428 |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 490 cttcgagctcctgccgttcgggtcggggcggagggcgtgccccgccat 443 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 374 gcctacctcacctacggccgcgcggacatgg 404 ||||||||||||||||||||||| ||||||| Sbjct: 1551 gcctacctcacctacggccgcgccgacatgg 1521 Score = 52.0 bits (26), Expect = 0.007 Identities = 35/38 (92%) Strand = Plus / Minus Query: 844 ggacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||||||||| |||||| || ||||||| Sbjct: 1096 ggacgccgacatggtggacgacatgctcgcgttcctcg 1059
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 79.8 bits (40), Expect = 3e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 1381 cttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccat 1428 |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 90826 cttcgagctcctgccgttcgggtcggggcggagggcgtgccccgccat 90779 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 374 gcctacctcacctacggccgcgcggacatgg 404 ||||||||||||||||||||||| ||||||| Sbjct: 91887 gcctacctcacctacggccgcgccgacatgg 91857 Score = 52.0 bits (26), Expect = 0.007 Identities = 35/38 (92%) Strand = Plus / Minus Query: 844 ggacgccgacatggtggacggcatgctggccttcctcg 881 |||||||||||||||||||| |||||| || ||||||| Sbjct: 91432 ggacgccgacatggtggacgacatgctcgcgttcctcg 91395
>gb|AY850934.1| Broussonetia papyrifera ferulate-5-hydroxylase (F5H) gene, complete cds Length = 2202 Score = 65.9 bits (33), Expect = 5e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 377 tacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcgag 436 ||||| || |||| ||| |||||||||| |||||| || ||||| || |||||||| || Sbjct: 355 tacctgacgtacgaccgggcggacatggcgttcgcccactacggcccgttctggcggcag 414 Query: 437 atgcggaagctgtgcgt 453 ||||||||||||||||| Sbjct: 415 atgcggaagctgtgcgt 431
>gb|AY850933.1| Broussonetia papyrifera ferulate-5-hydroxylase (F5H) mRNA, complete cds Length = 1685 Score = 65.9 bits (33), Expect = 5e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 377 tacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcgag 436 ||||| || |||| ||| |||||||||| |||||| || ||||| || |||||||| || Sbjct: 453 tacctgacgtacgaccgggcggacatggcgttcgcccactacggcccgttctggcggcag 512 Query: 437 atgcggaagctgtgcgt 453 ||||||||||||||||| Sbjct: 513 atgcggaagctgtgcgt 529
>gb|DQ340235.1| Glycine max cytochrome P450 monooxygenase CYP84A16 (CYP84A16) mRNA, complete cds Length = 1857 Score = 61.9 bits (31), Expect = 7e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 376 ctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcga 435 |||||| ||||||| |||||| ||||||| || || || ||||| |||||||||||| | Sbjct: 407 ctaccttacctacgaccgcgccgacatggcttttgcccactacggccccttctggcgcca 466 Query: 436 gatgcggaagctgtgcgtc 454 ||||||||| || |||||| Sbjct: 467 gatgcggaaactctgcgtc 485 Score = 46.1 bits (23), Expect = 0.42 Identities = 35/39 (89%) Strand = Plus / Plus Query: 955 ggataacatcaaggccaccattatggatgtgatgatcgg 993 ||||||||||||||| | ||||||||| |||||| |||| Sbjct: 980 ggataacatcaaggctatcattatggacgtgatgttcgg 1018
>emb|CT987560.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 860 Score = 60.0 bits (30), Expect = 3e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 376 ctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcga 435 ||||||||| || | ||| || ||||||| |||||||| ||||| || |||||||| | Sbjct: 408 ctacctcacgtatgaccgggccgacatggccttcgcgcactacggcccgttctggcggca 467 Query: 436 gatgcggaagctgtgcgt 453 |||||||||||||||||| Sbjct: 468 gatgcggaagctgtgcgt 485
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccatgcagctggg 1437 |||||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| Sbjct: 13993976 acttccagtacctgccgttcgggtccgggcggcggtcgtgcccggggatgcagctggg 13993919 Score = 50.1 bits (25), Expect = 0.027 Identities = 31/33 (93%) Strand = Plus / Minus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||||| || ||||||||||||||||||||| Sbjct: 24148667 cacttccacctgctgccgttcgggtcggggcgg 24148635 Score = 48.1 bits (24), Expect = 0.11 Identities = 33/36 (91%) Strand = Plus / Minus Query: 1389 tcctgccgttcgggtcggggcggaggtcgtgccccg 1424 |||| ||||||||||||||||||||| |||||||| Sbjct: 17519979 tcctcccgttcgggtcggggcggaggctgtgccccg 17519944 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 25690167 ggcgccgacttcgagctcctgccgttcgg 25690195 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 25706993 ggcgccgacttcgagctcctgccgttcgg 25707021
>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031J07 Length = 172511 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccgccatgcagctggg 1437 |||||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| Sbjct: 111196 acttccagtacctgccgttcgggtccgggcggcggtcgtgcccggggatgcagctggg 111139
>ref|NM_001058439.1| Oryza sativa (japonica cultivar-group) Os03g0850200 (Os03g0850200) mRNA, complete cds Length = 1584 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||||||||||||||||||||||||| Sbjct: 1360 cacttcgagctcctgccgttcgggtcggggcgg 1392
>ref|NM_001056905.1| Oryza sativa (japonica cultivar-group) Os03g0417700 (Os03g0417700) mRNA, complete cds Length = 1647 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||| | ||||||||||||||||| ||||||||||| Sbjct: 1225 gtgaaggaggcgctccgcgtgcacccgccgggcccgctcct 1265
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||| | ||||||||||||||||| ||||||||||| Sbjct: 44668 gtgaaggaggcgctccgcgtgcacccgccgggcccgctcct 44628
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Minus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||||||||||||||||||||||||| Sbjct: 10746 cacttcgagctcctgccgttcgggtcggggcgg 10714
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||||||||||||||||||||||||| Sbjct: 9843 cacttcgagctcctgccgttcgggtcggggcgg 9875
>emb|CR855021.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0126J24, complete sequence Length = 81136 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1392 tgccgttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| ||||||||||||||||||| Sbjct: 49761 tgccgttcggggcggggcggaggtcgtgccc 49731
>ref|NM_001058621.1| Oryza sativa (japonica cultivar-group) Os04g0128400 (Os04g0128400) mRNA, complete cds Length = 1698 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Plus Query: 1392 tgccgttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| ||||||||||||||||||| Sbjct: 1490 tgccgttcggggcggggcggaggtcgtgccc 1520
>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete sequence Length = 149449 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1392 tgccgttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| ||||||||||||||||||| Sbjct: 110183 tgccgttcggggcggggcggaggtcgtgccc 110153
>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09, complete sequence Length = 155672 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1392 tgccgttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| ||||||||||||||||||| Sbjct: 62498 tgccgttcggggcggggcggaggtcgtgccc 62468
>emb|AJ249093.1|EGU249093 Eucalyptus gunnii F5H gene for ferulate-5-hydroxylase Length = 209 Score = 52.0 bits (26), Expect = 0.007 Identities = 62/74 (83%) Strand = Plus / Plus Query: 376 ctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcga 435 ||||||||| || | ||| || ||||||| |||||||| ||||| || |||||||| | Sbjct: 136 ctacctcacgtatgaccgggccgacatggccttcgcgcactacggcccgttctggcggca 195 Query: 436 gatgcggaagctgt 449 |||||||||||||| Sbjct: 196 gatgcggaagctgt 209
>ref|NM_001066750.1| Oryza sativa (japonica cultivar-group) Os07g0603700 (Os07g0603700) mRNA, complete cds Length = 1578 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||||| || ||| |||||||||| ||||||||||| Sbjct: 1153 gtgaaggagacgctgcgcatgcacccgccgggcccgctcct 1193
>ref|NM_001064607.1| Oryza sativa (japonica cultivar-group) Os06g0613600 (Os06g0613600) mRNA, complete cds Length = 1587 Score = 50.1 bits (25), Expect = 0.027 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||||| || ||||||||||||||||||||| Sbjct: 1342 cacttccacctgctgccgttcgggtcggggcgg 1374
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||||| || ||| |||||||||| ||||||||||| Sbjct: 24661490 gtgaaggagacgctgcgcatgcacccgccgggcccgctcct 24661530
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 50.1 bits (25), Expect = 0.027 Identities = 31/33 (93%) Strand = Plus / Minus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||||| || ||||||||||||||||||||| Sbjct: 82125 cacttccacctgctgccgttcgggtcggggcgg 82093
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||||| || ||| |||||||||| ||||||||||| Sbjct: 17427 gtgaaggagacgctgcgcatgcacccgccgggcccgctcct 17467
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1157 gtgaaggagaccctccgcgtgcacccgcccggcccgctcct 1197 ||||||||||| || ||| |||||||||| ||||||||||| Sbjct: 117557 gtgaaggagacgctgcgcatgcacccgccgggcccgctcct 117597
>ref|NM_001064244.1| Oryza sativa (japonica cultivar-group) Os06g0501900 (Os06g0501900) mRNA, complete cds Length = 1678 Score = 48.1 bits (24), Expect = 0.11 Identities = 33/36 (91%) Strand = Plus / Plus Query: 1389 tcctgccgttcgggtcggggcggaggtcgtgccccg 1424 |||| ||||||||||||||||||||| |||||||| Sbjct: 1365 tcctcccgttcgggtcggggcggaggctgtgccccg 1400
>ref|XM_001173173.1| PREDICTED: Pan troglodytes myosin IXB, transcript variant 2 (MYO9B), mRNA Length = 7673 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6139 cccgcccggcccgctcctccagca 6116
>ref|XM_001173181.1| PREDICTED: Pan troglodytes myosin IXB, transcript variant 3 (MYO9B), mRNA Length = 7586 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6172 cccgcccggcccgctcctccagca 6149
>ref|XM_512476.2| PREDICTED: Pan troglodytes myosin IXB, transcript variant 4 (MYO9B), mRNA Length = 7553 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6139 cccgcccggcccgctcctccagca 6116
>ref|XM_001114282.1| PREDICTED: Macaca mulatta similar to myosin IXB (LOC719690), mRNA Length = 6387 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6088 cccgcccggcccgctcctccagca 6065
>ref|NM_004145.2| Homo sapiens myosin IXB (MYO9B), mRNA Length = 7488 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6046 cccgcccggcccgctcctccagca 6023
>gb|BC018108.1| Homo sapiens myosin IXB, mRNA (cDNA clone IMAGE:3914927), partial cds Length = 2522 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 1080 cccgcccggcccgctcctccagca 1057
>dbj|AK002201.1| Homo sapiens cDNA FLJ11339 fis, clone PLACE1010743, weakly similar to Homo sapiens myosin-IXb splice variant mRNA Length = 2087 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 565 cccgcccggcccgctcctccagca 542
>gb|AC020913.9| Homo sapiens chromosome 19 clone CTD-3032J10, complete sequence Length = 117751 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 108753 cccgcccggcccgctcctccagca 108730
>dbj|AB209997.1| Homo sapiens mRNA for MYO9B variant protein, partial cds, clone: ef05385 Length = 7607 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 6193 cccgcccggcccgctcctccagca 6170
>gb|AC010646.5| Homo sapiens chromosome 19 clone LLNLR-277B12, complete sequence Length = 41461 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 2120 cccgcccggcccgctcctccagca 2097
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 48.1 bits (24), Expect = 0.11 Identities = 33/36 (91%) Strand = Plus / Minus Query: 1389 tcctgccgttcgggtcggggcggaggtcgtgccccg 1424 |||| ||||||||||||||||||||| |||||||| Sbjct: 151020 tcctcccgttcgggtcggggcggaggctgtgccccg 150985
>dbj|AP005472.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075M17 Length = 91422 Score = 48.1 bits (24), Expect = 0.11 Identities = 33/36 (91%) Strand = Plus / Minus Query: 1389 tcctgccgttcgggtcggggcggaggtcgtgccccg 1424 |||| ||||||||||||||||||||| |||||||| Sbjct: 24425 tcctcccgttcgggtcggggcggaggctgtgccccg 24390
>dbj|AK106229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A12, full insert sequence Length = 1679 Score = 48.1 bits (24), Expect = 0.11 Identities = 33/36 (91%) Strand = Plus / Plus Query: 1389 tcctgccgttcgggtcggggcggaggtcgtgccccg 1424 |||| ||||||||||||||||||||| |||||||| Sbjct: 1366 tcctcccgttcgggtcggggcggaggctgtgccccg 1401
>gb|AF143684.1|AF143684 Homo sapiens unconventional myosin IXb (MYO9b) mRNA, partial cds Length = 1545 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 763 cccgcccggcccgctcctccagca 740
>gb|AF020267.1|AF020267 Homo sapiens myosin-IXb splice variant (Myo9b) mRNA, partial cds Length = 672 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1180 cccgcccggcccgctcctccagca 1203 |||||||||||||||||||||||| Sbjct: 232 cccgcccggcccgctcctccagca 209
>dbj|AK243342.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100059N12, full insert sequence Length = 1710 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gctcccgccggggccgcgggcgctgcc 177 |||||||||||||||| |||||||||| Sbjct: 127 gctcccgccggggccgtgggcgctgcc 153
>ref|NM_001053438.1| Oryza sativa (japonica cultivar-group) Os02g0503100 (Os02g0503100) mRNA, complete cds Length = 1614 Score = 46.1 bits (23), Expect = 0.42 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1253 acccgcgtcctcatcaacgtgtgggcgatcgggcg 1287 |||||||| ||| ||||||||||||| |||||||| Sbjct: 1246 acccgcgtgctcgtcaacgtgtgggccatcgggcg 1280
>ref|NM_001052659.1| Oryza sativa (japonica cultivar-group) Os02g0186900 (Os02g0186900) mRNA, complete cds Length = 1557 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gctcccgccggggccgcgggcgctgcc 177 |||||||||||||||| |||||||||| Sbjct: 117 gctcccgccggggccgtgggcgctgcc 143
>gb|AY621153.1| Camptotheca acuminata ferulate 5-hydroxylase (F5H) gene, complete cds Length = 5168 Score = 46.1 bits (23), Expect = 0.42 Identities = 65/79 (82%) Strand = Plus / Plus Query: 376 ctacctcacctacggccgcgcggacatggtgttcgcgcagtacggacccttctggcgcga 435 |||||||||||||| |||||| ||||||| || || || ||||| || || ||| | | Sbjct: 2537 ctacctcacctacgaccgcgccgacatggcttttgctcactacggccctttttggaggca 2596 Query: 436 gatgcggaagctgtgcgtc 454 |||||||||||| |||||| Sbjct: 2597 gatgcggaagctatgcgtc 2615 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1400 gggtcggggcggaggtcgtgccccg 1424 |||||||| |||||||||||||||| Sbjct: 4190 gggtcgggtcggaggtcgtgccccg 4214
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1263 tcatcaacgtgtgggcgatcggg 1285 ||||||||||||||||||||||| Sbjct: 20469101 tcatcaacgtgtgggcgatcggg 20469123 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1380 acttccagctcctgccgttcgggtc 1404 |||||||||| |||||||||||||| Sbjct: 16307135 acttccagctgctgccgttcgggtc 16307111 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 16335291 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 16335335
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gctcccgccggggccgcgggcgctgcc 177 |||||||||||||||| |||||||||| Sbjct: 4826527 gctcccgccggggccgtgggcgctgcc 4826553 Score = 46.1 bits (23), Expect = 0.42 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1253 acccgcgtcctcatcaacgtgtgggcgatcgggcg 1287 |||||||| ||| ||||||||||||| |||||||| Sbjct: 17908272 acccgcgtgctcgtcaacgtgtgggccatcgggcg 17908306
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gctcccgccggggccgcgggcgctgcc 177 |||||||||||||||| |||||||||| Sbjct: 107117 gctcccgccggggccgtgggcgctgcc 107143
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gctcccgccggggccgcgggcgctgcc 177 |||||||||||||||| |||||||||| Sbjct: 68686 gctcccgccggggccgtgggcgctgcc 68712
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1263 tcatcaacgtgtgggcgatcggg 1285 ||||||||||||||||||||||| Sbjct: 97240 tcatcaacgtgtgggcgatcggg 97262
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 46.1 bits (23), Expect = 0.42 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1253 acccgcgtcctcatcaacgtgtgggcgatcgggcg 1287 |||||||| ||| ||||||||||||| |||||||| Sbjct: 42905 acccgcgtgctcgtcaacgtgtgggccatcgggcg 42939
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 46.1 bits (23), Expect = 0.42 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1253 acccgcgtcctcatcaacgtgtgggcgatcgggcg 1287 |||||||| ||| ||||||||||||| |||||||| Sbjct: 147803 acccgcgtgctcgtcaacgtgtgggccatcgggcg 147837
>ref|NM_001057319.1| Oryza sativa (japonica cultivar-group) Os03g0650200 (Os03g0650200) mRNA, complete cds Length = 1614 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1386 agctcctgccgttcgggtcggggcgg 1411 |||| ||||||||||||||||||||| Sbjct: 1373 agctgctgccgttcgggtcggggcgg 1398
>emb|CT986854.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 560 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1397 ttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| |||||||||||||| Sbjct: 19 ttcgggtcgggccggaggtcgtgccc 44
>emb|CT985988.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 560 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1397 ttcgggtcggggcggaggtcgtgccc 1422 ||||||||||| |||||||||||||| Sbjct: 19 ttcgggtcgggccggaggtcgtgccc 44
>gb|DQ215359.1| Taeniopygia guttata clone 0058P0022D09 RIKEN cDNA 2510048O06 variant 1-like mRNA, complete sequence Length = 883 Score = 44.1 bits (22), Expect = 1.7 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1682 aaactgttgaataaaggttttctatttttg 1711 ||||||||||||||| |||| ||||||||| Sbjct: 837 aaactgttgaataaaagtttgctatttttg 866
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1386 agctcctgccgttcgggtcggggcgg 1411 |||| ||||||||||||||||||||| Sbjct: 50195 agctgctgccgttcgggtcggggcgg 50170
>emb|CR855057.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0109M01, complete sequence Length = 91447 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 1022 gagtggttaatgtcggagctgctgaggaacccggagg 1058 |||||| | |||||||||||| |||||||||| |||| Sbjct: 1277 gagtggctcatgtcggagctgatgaggaacccagagg 1241
>ref|NM_001072647.1| Oryza sativa (japonica cultivar-group) Os12g0138800 (Os12g0138800) mRNA, complete cds Length = 3358 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||| |||||||||||||| |||||| Sbjct: 615 cacttcgagctgctgccgttcgggtcagggcgg 647
>ref|NM_001069820.1| Oryza sativa (japonica cultivar-group) Os09g0441400 (Os09g0441400) mRNA, complete cds Length = 1822 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 1376 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 1420
>ref|NM_001069819.1| Oryza sativa (japonica cultivar-group) Os09g0441100 (Os09g0441100) mRNA, complete cds Length = 1866 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtc 1404 |||||||||| |||||||||||||| Sbjct: 1403 acttccagctgctgccgttcgggtc 1427
>ref|NM_001064700.1| Oryza sativa (japonica cultivar-group) Os06g0640800 (Os06g0640800) mRNA, complete cds Length = 1539 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 1300 ggcgccgacttcgagctcctgccgttcgg 1328
>ref|NM_001058526.1| Oryza sativa (japonica cultivar-group) Os04g0101400 (Os04g0101400) mRNA, complete cds Length = 1736 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 1213 tcatcaacgtgtgggccatcgggcg 1237
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 769 acgggctgcgctggaccggttcatcgacc 797 |||||| |||||||||||| ||||||||| Sbjct: 6090103 acgggcggcgctggaccggctcatcgacc 6090075
>emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0102C09, complete sequence Length = 72636 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 37591 tcatcaacgtgtgggccatcgggcg 37567
>gb|DQ213904.1| Taeniopygia guttata clone 0058P0026B02 TR4 orphan receptor associated protein TRA16 variant 2-like mRNA, complete sequence Length = 1277 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cccctcccgctcccgccggggccgc 167 ||||||||| ||||||||||||||| Sbjct: 42 cccctcccggtcccgccggggccgc 18
>gb|DQ213903.1| Taeniopygia guttata clone 0058P0061H04 TR4 orphan receptor associated protein TRA16 variant 2-like mRNA, complete sequence Length = 1276 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cccctcccgctcccgccggggccgc 167 ||||||||| ||||||||||||||| Sbjct: 42 cccctcccggtcccgccggggccgc 18
>ref|XM_879800.1| PREDICTED: Bos taurus hypothetical protein LOC615402 (LOC615402), mRNA Length = 1431 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 ccgccggggccgcgggcgctgccgt 179 ||||||||||||||| ||||||||| Sbjct: 580 ccgccggggccgcggccgctgccgt 556
>gb|AY596978.1| Centaurium erythraea coniferylalcohol 5-hydroxylase mRNA, complete cds Length = 1560 Score = 42.1 bits (21), Expect = 6.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1397 ttcgggtcggggcggaggtcgtgccccgccatgcagctggg 1437 ||||||||||| |||||||| ||||||| ||||| ||||| Sbjct: 1345 ttcgggtcgggtcggaggtcttgccccggaatgcaactggg 1385
>gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete sequence Length = 123953 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1682 aaactgttgaataaaggtttt 1702 ||||||||||||||||||||| Sbjct: 776 aaactgttgaataaaggtttt 756
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1188 gcccgctcctccagcacgaggccgc 1212 |||| |||||||||||||||||||| Sbjct: 115583 gccccctcctccagcacgaggccgc 115607
>gb|AC099786.2| Homo sapiens chromosome 1 clone RP11-510C10, complete sequence Length = 181443 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1074 aaaacgagctggccgtggtggttgg 1098 ||||| ||||||||||||||||||| Sbjct: 165213 aaaactagctggccgtggtggttgg 165189
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||| |||||||||||||| |||||| Sbjct: 1882339 cacttcgagctgctgccgttcgggtcagggcgg 1882371
>emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1160F02, complete sequence Length = 139971 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 90860 tcatcaacgtgtgggccatcgggcg 90836
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1295 gaggcctggaaggacgccggg 1315 ||||||||||||||||||||| Sbjct: 138853 gaggcctggaaggacgccggg 138873
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 tggtcaccgacccctcccgct 153 ||||||||||||||||||||| Sbjct: 1451160 tggtcaccgacccctcccgct 1451180
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 113612 ggcgccgacttcgagctcctgccgttcgg 113640 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 130438 ggcgccgacttcgagctcctgccgttcgg 130466
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0046G12 Length = 189391 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 23838 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 23882
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1380 acttccagctcctgccgttcgggtc 1404 |||||||||| |||||||||||||| Sbjct: 123651 acttccagctgctgccgttcgggtc 123627 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 151807 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 151851
>dbj|AK111616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107D15, full insert sequence Length = 1825 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 1379 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 1423
>dbj|AK107584.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E07, full insert sequence Length = 1865 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtc 1404 |||||||||| |||||||||||||| Sbjct: 1403 acttccagctgctgccgttcgggtc 1427
>dbj|AK105745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B05, full insert sequence Length = 1734 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 1213 tcatcaacgtgtgggccatcgggcg 1237
>dbj|AK100972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143C19, full insert sequence Length = 1738 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 1215 tcatcaacgtgtgggccatcgggcg 1239
>dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F15, full insert sequence Length = 3587 Score = 42.1 bits (21), Expect = 6.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1380 acttccagctcctgccgttcgggtcggggcggaggtcgtgccccg 1424 ||||| |||| ||||||||||||||||| ||| || |||||||| Sbjct: 3142 acttcgagctgctgccgttcgggtcgggccggcggatgtgccccg 3186
>dbj|AK064775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A24, full insert sequence Length = 3358 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||| |||||||||||||| |||||| Sbjct: 616 cacttcgagctgctgccgttcgggtcagggcgg 648
>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete sequence Length = 272769 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1677 aataaaaactgttgaataaag 1697 ||||||||||||||||||||| Sbjct: 170794 aataaaaactgttgaataaag 170774
>emb|AJ010324.1|PAJ10324 Populus trichocarpa cv trichobel mRNA for ferulate-5-hydroxylase Length = 1873 Score = 42.1 bits (21), Expect = 6.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 959 aacatcaaggccaccattatggatgtgatgatcggtgggac 999 |||||||| |||| ||| |||||||||||| | |||||||| Sbjct: 957 aacatcaaagccatcatcatggatgtgatgtttggtgggac 997
>gb|AY104522.1| Zea mays PCO077650 mRNA sequence Length = 1833 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1373 ggcgcccacttccagctcctgccgttcgg 1401 |||||| ||||| |||||||||||||||| Sbjct: 1307 ggcgccgacttcgagctcctgccgttcgg 1335
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 499 ccacgacgaggtcgacaacctgatc 523 |||| |||||||||||||||||||| Sbjct: 3372910 ccacaacgaggtcgacaacctgatc 3372934
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||| |||||||||||||| |||||| Sbjct: 77030 cacttcgagctgctgccgttcgggtcagggcgg 77062
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06, complete sequence Length = 145517 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1263 tcatcaacgtgtgggcgatcgggcg 1287 |||||||||||||||| |||||||| Sbjct: 22109 tcatcaacgtgtgggccatcgggcg 22085
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107247 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 1379 cacttccagctcctgccgttcgggtcggggcgg 1411 |||||| |||| |||||||||||||| |||||| Sbjct: 85882 cacttcgagctgctgccgttcgggtcagggcgg 85850
>dbj|AB050476.1| Homo sapiens gene for LIM-homeodomain protein Lhx8, partial cds Length = 11878 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1074 aaaacgagctggccgtggtggttgg 1098 ||||| ||||||||||||||||||| Sbjct: 5500 aaaactagctggccgtggtggttgg 5476 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 214,365,881 Number of extensions: 11035740 Number of successful extensions: 217659 Number of sequences better than 10.0: 102 Number of HSP's gapped: 217652 Number of HSP's successfully gapped: 146 Length of query: 1730 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1707 Effective length of database: 18,503,978,556 Effective search space: 31586291395092 Effective search space used: 31586291395092 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
