ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf36g04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050303.1| Oryza sativa (japonica cultivar-group) Os01g0659800 (Os01g0659800) mRNA, complete cds Length = 1354 Score = 402 bits (203), Expect = e-108 Identities = 445/525 (84%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 70 ggcgccggacgaggaggccggactggggctcccggaggacgagcggcttctggaggtcac 129 ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||||| Sbjct: 141 ggcgccggacgaggaggccgggctggcgctccccgagggcgagcggattctggaggtcac 200 Query: 130 catcatctccgcgcaggggctgaagccgccttctggacttcggcggcggttgc---aggc 186 | ||||||||||||||||||||||||| || || || || ||||||||| ||| |||| Sbjct: 201 cctcatctccgcgcaggggctgaagcctccctccggcctgcggcggcggctgctgcaggc 260 Query: 187 gtacgccgtggcgtgggttgacacggcgcacaggctccagacgcaacccgaccgctctgg 246 |||||||||||||||||| ||| |||||| |||||||||||||| || |||||| | || Sbjct: 261 gtacgccgtggcgtgggtggacgcggcgcgcaggctccagacgcggccggaccgcgcggg 320 Query: 247 cggcctcgatccggcttggcacgagcggttcctcttccgcgtgcacgaagccgcgctcgc 306 ||| |||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 321 cggggtcgacccggagtggcacgagcgcctcctcttccgcgtccacgaggccgcgctcgc 380 Query: 307 cgaggattcccgcgctgccgtcaccgtcgagatctacgcctcaccgaacggggcctggca 366 ||| || |||||||| |||||||||||||||||||||||| | || ||| | |||||| Sbjct: 381 cgacgactcccgcgccgccgtcaccgtcgagatctacgccgcgcccgccggcggctggca 440 Query: 367 catcggcggggactccctgatcggatcagcgcggttcctcctcggcgacaactgcctcct 426 |||||| |||||||||||| |||| || || |||||||| ||||||||| || ||||||| Sbjct: 441 catcgggggggactccctggtcggctccgcccggttcctgctcggcgaccacggcctcct 500 Query: 427 gtctcgccccgttgggtccccagccatgttcgcggtcggcgtccgacgcccctccggccg 486 ||| || ||||| |||||||| | |||||||| ||||| || || |||||||||||||| Sbjct: 501 gtcccggcccgtcgggtccccgtcgatgttcgccgtcggtgtgcgccgcccctccggccg 560 Query: 487 cgtccacggactcctcaatgtggccgctagcctggtcgctgcgccgccctctccggcggc 546 ||||||||| ||||| || ||||| || || || ||||| |||||||| || ||||| || Sbjct: 561 cgtccacggcctccttaacgtggcggccagtctcgtcgccgcgccgccgtccccggcagc 620 Query: 547 ctcccacgccctcagcctctcccccgccgtctctctcagtggcct 591 ||||||| ||| || |||||||||||||| ||||| ||||| Sbjct: 621 tgcccacgctctccgctcatcccccgccgtctccctcagcggcct 665 Score = 123 bits (62), Expect = 2e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 833 atgggcggggtgatgttttgcgggccttgtgtcttaccattcccgaggaagattcacacc 892 |||||||||||| ||||||||||||||||| || ||||||| || || ||||| |||| Sbjct: 877 atgggcggggtggtgttttgcgggccttgtatcctaccattaccaagaaagatccacata 936 Query: 893 agtccctctgacgagaacctgcaggccttcgctggcatcttctctagcggtgtcggcatt 952 || |||||||||||||||||||||||||| ||| |||||||||| |||| || |||||| Sbjct: 937 agcccctctgacgagaacctgcaggcctttgctagcatcttctccggcggagttggcatt 996 Query: 953 gccagacggagccc 966 |||||| |||||| Sbjct: 997 accagacagagccc 1010 Score = 71.9 bits (36), Expect = 5e-09 Identities = 95/114 (83%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 609 tcagcagcctctccacggcgcccatctcag---gccgcgtgctgcgcgtcctcaaccgcg 665 ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct: 656 tcagcggcctctccacggcgcccatcccagcaggccgcgtgctccgcgtcctcaaccgct 715 Query: 666 cgcacccaacacccccaccttctcctaaggtgctcacgcccaagaagctgcaga 719 || || || |||||||| ||||| | ||| || ||| ||||||||| ||||| Sbjct: 716 cgtttccgacgcccccaccctctccgacggttcttacgaccaagaagcagcaga 769
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 402 bits (203), Expect = e-108 Identities = 445/525 (84%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 70 ggcgccggacgaggaggccggactggggctcccggaggacgagcggcttctggaggtcac 129 ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||||| Sbjct: 26855479 ggcgccggacgaggaggccgggctggcgctccccgagggcgagcggattctggaggtcac 26855538 Query: 130 catcatctccgcgcaggggctgaagccgccttctggacttcggcggcggttgc---aggc 186 | ||||||||||||||||||||||||| || || || || ||||||||| ||| |||| Sbjct: 26855539 cctcatctccgcgcaggggctgaagcctccctccggcctgcggcggcggctgctgcaggc 26855598 Query: 187 gtacgccgtggcgtgggttgacacggcgcacaggctccagacgcaacccgaccgctctgg 246 |||||||||||||||||| ||| |||||| |||||||||||||| || |||||| | || Sbjct: 26855599 gtacgccgtggcgtgggtggacgcggcgcgcaggctccagacgcggccggaccgcgcggg 26855658 Query: 247 cggcctcgatccggcttggcacgagcggttcctcttccgcgtgcacgaagccgcgctcgc 306 ||| |||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 26855659 cggggtcgacccggagtggcacgagcgcctcctcttccgcgtccacgaggccgcgctcgc 26855718 Query: 307 cgaggattcccgcgctgccgtcaccgtcgagatctacgcctcaccgaacggggcctggca 366 ||| || |||||||| |||||||||||||||||||||||| | || ||| | |||||| Sbjct: 26855719 cgacgactcccgcgccgccgtcaccgtcgagatctacgccgcgcccgccggcggctggca 26855778 Query: 367 catcggcggggactccctgatcggatcagcgcggttcctcctcggcgacaactgcctcct 426 |||||| |||||||||||| |||| || || |||||||| ||||||||| || ||||||| Sbjct: 26855779 catcgggggggactccctggtcggctccgcccggttcctgctcggcgaccacggcctcct 26855838 Query: 427 gtctcgccccgttgggtccccagccatgttcgcggtcggcgtccgacgcccctccggccg 486 ||| || ||||| |||||||| | |||||||| ||||| || || |||||||||||||| Sbjct: 26855839 gtcccggcccgtcgggtccccgtcgatgttcgccgtcggtgtgcgccgcccctccggccg 26855898 Query: 487 cgtccacggactcctcaatgtggccgctagcctggtcgctgcgccgccctctccggcggc 546 ||||||||| ||||| || ||||| || || || ||||| |||||||| || ||||| || Sbjct: 26855899 cgtccacggcctccttaacgtggcggccagtctcgtcgccgcgccgccgtccccggcagc 26855958 Query: 547 ctcccacgccctcagcctctcccccgccgtctctctcagtggcct 591 ||||||| ||| || |||||||||||||| ||||| ||||| Sbjct: 26855959 tgcccacgctctccgctcatcccccgccgtctccctcagcggcct 26856003 Score = 123 bits (62), Expect = 2e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 833 atgggcggggtgatgttttgcgggccttgtgtcttaccattcccgaggaagattcacacc 892 |||||||||||| ||||||||||||||||| || ||||||| || || ||||| |||| Sbjct: 26856215 atgggcggggtggtgttttgcgggccttgtatcctaccattaccaagaaagatccacata 26856274 Query: 893 agtccctctgacgagaacctgcaggccttcgctggcatcttctctagcggtgtcggcatt 952 || |||||||||||||||||||||||||| ||| |||||||||| |||| || |||||| Sbjct: 26856275 agcccctctgacgagaacctgcaggcctttgctagcatcttctccggcggagttggcatt 26856334 Query: 953 gccagacggagccc 966 |||||| |||||| Sbjct: 26856335 accagacagagccc 26856348 Score = 71.9 bits (36), Expect = 5e-09 Identities = 95/114 (83%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 609 tcagcagcctctccacggcgcccatctcag---gccgcgtgctgcgcgtcctcaaccgcg 665 ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct: 26855994 tcagcggcctctccacggcgcccatcccagcaggccgcgtgctccgcgtcctcaaccgct 26856053 Query: 666 cgcacccaacacccccaccttctcctaaggtgctcacgcccaagaagctgcaga 719 || || || |||||||| ||||| | ||| || ||| ||||||||| ||||| Sbjct: 26856054 cgtttccgacgcccccaccctctccgacggttcttacgaccaagaagcagcaga 26856107 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgctcgccggcgatg 67 ||||||||||||||||||||| Sbjct: 101952 cgccgccgctcgccggcgatg 101932 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 7936169 agcgccgccgctcgccggcga 7936149
>dbj|AP004364.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445H04 Length = 202821 Score = 402 bits (203), Expect = e-108 Identities = 445/525 (84%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 70 ggcgccggacgaggaggccggactggggctcccggaggacgagcggcttctggaggtcac 129 ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||||| Sbjct: 37124 ggcgccggacgaggaggccgggctggcgctccccgagggcgagcggattctggaggtcac 37183 Query: 130 catcatctccgcgcaggggctgaagccgccttctggacttcggcggcggttgc---aggc 186 | ||||||||||||||||||||||||| || || || || ||||||||| ||| |||| Sbjct: 37184 cctcatctccgcgcaggggctgaagcctccctccggcctgcggcggcggctgctgcaggc 37243 Query: 187 gtacgccgtggcgtgggttgacacggcgcacaggctccagacgcaacccgaccgctctgg 246 |||||||||||||||||| ||| |||||| |||||||||||||| || |||||| | || Sbjct: 37244 gtacgccgtggcgtgggtggacgcggcgcgcaggctccagacgcggccggaccgcgcggg 37303 Query: 247 cggcctcgatccggcttggcacgagcggttcctcttccgcgtgcacgaagccgcgctcgc 306 ||| |||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 37304 cggggtcgacccggagtggcacgagcgcctcctcttccgcgtccacgaggccgcgctcgc 37363 Query: 307 cgaggattcccgcgctgccgtcaccgtcgagatctacgcctcaccgaacggggcctggca 366 ||| || |||||||| |||||||||||||||||||||||| | || ||| | |||||| Sbjct: 37364 cgacgactcccgcgccgccgtcaccgtcgagatctacgccgcgcccgccggcggctggca 37423 Query: 367 catcggcggggactccctgatcggatcagcgcggttcctcctcggcgacaactgcctcct 426 |||||| |||||||||||| |||| || || |||||||| ||||||||| || ||||||| Sbjct: 37424 catcgggggggactccctggtcggctccgcccggttcctgctcggcgaccacggcctcct 37483 Query: 427 gtctcgccccgttgggtccccagccatgttcgcggtcggcgtccgacgcccctccggccg 486 ||| || ||||| |||||||| | |||||||| ||||| || || |||||||||||||| Sbjct: 37484 gtcccggcccgtcgggtccccgtcgatgttcgccgtcggtgtgcgccgcccctccggccg 37543 Query: 487 cgtccacggactcctcaatgtggccgctagcctggtcgctgcgccgccctctccggcggc 546 ||||||||| ||||| || ||||| || || || ||||| |||||||| || ||||| || Sbjct: 37544 cgtccacggcctccttaacgtggcggccagtctcgtcgccgcgccgccgtccccggcagc 37603 Query: 547 ctcccacgccctcagcctctcccccgccgtctctctcagtggcct 591 ||||||| ||| || |||||||||||||| ||||| ||||| Sbjct: 37604 tgcccacgctctccgctcatcccccgccgtctccctcagcggcct 37648 Score = 123 bits (62), Expect = 2e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 833 atgggcggggtgatgttttgcgggccttgtgtcttaccattcccgaggaagattcacacc 892 |||||||||||| ||||||||||||||||| || ||||||| || || ||||| |||| Sbjct: 37860 atgggcggggtggtgttttgcgggccttgtatcctaccattaccaagaaagatccacata 37919 Query: 893 agtccctctgacgagaacctgcaggccttcgctggcatcttctctagcggtgtcggcatt 952 || |||||||||||||||||||||||||| ||| |||||||||| |||| || |||||| Sbjct: 37920 agcccctctgacgagaacctgcaggcctttgctagcatcttctccggcggagttggcatt 37979 Query: 953 gccagacggagccc 966 |||||| |||||| Sbjct: 37980 accagacagagccc 37993 Score = 71.9 bits (36), Expect = 5e-09 Identities = 95/114 (83%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 609 tcagcagcctctccacggcgcccatctcag---gccgcgtgctgcgcgtcctcaaccgcg 665 ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct: 37639 tcagcggcctctccacggcgcccatcccagcaggccgcgtgctccgcgtcctcaaccgct 37698 Query: 666 cgcacccaacacccccaccttctcctaaggtgctcacgcccaagaagctgcaga 719 || || || |||||||| ||||| | ||| || ||| ||||||||| ||||| Sbjct: 37699 cgtttccgacgcccccaccctctccgacggttcttacgaccaagaagcagcaga 37752
>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684E06 Length = 147004 Score = 402 bits (203), Expect = e-108 Identities = 445/525 (84%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 70 ggcgccggacgaggaggccggactggggctcccggaggacgagcggcttctggaggtcac 129 ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||||| Sbjct: 91128 ggcgccggacgaggaggccgggctggcgctccccgagggcgagcggattctggaggtcac 91187 Query: 130 catcatctccgcgcaggggctgaagccgccttctggacttcggcggcggttgc---aggc 186 | ||||||||||||||||||||||||| || || || || ||||||||| ||| |||| Sbjct: 91188 cctcatctccgcgcaggggctgaagcctccctccggcctgcggcggcggctgctgcaggc 91247 Query: 187 gtacgccgtggcgtgggttgacacggcgcacaggctccagacgcaacccgaccgctctgg 246 |||||||||||||||||| ||| |||||| |||||||||||||| || |||||| | || Sbjct: 91248 gtacgccgtggcgtgggtggacgcggcgcgcaggctccagacgcggccggaccgcgcggg 91307 Query: 247 cggcctcgatccggcttggcacgagcggttcctcttccgcgtgcacgaagccgcgctcgc 306 ||| |||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 91308 cggggtcgacccggagtggcacgagcgcctcctcttccgcgtccacgaggccgcgctcgc 91367 Query: 307 cgaggattcccgcgctgccgtcaccgtcgagatctacgcctcaccgaacggggcctggca 366 ||| || |||||||| |||||||||||||||||||||||| | || ||| | |||||| Sbjct: 91368 cgacgactcccgcgccgccgtcaccgtcgagatctacgccgcgcccgccggcggctggca 91427 Query: 367 catcggcggggactccctgatcggatcagcgcggttcctcctcggcgacaactgcctcct 426 |||||| |||||||||||| |||| || || |||||||| ||||||||| || ||||||| Sbjct: 91428 catcgggggggactccctggtcggctccgcccggttcctgctcggcgaccacggcctcct 91487 Query: 427 gtctcgccccgttgggtccccagccatgttcgcggtcggcgtccgacgcccctccggccg 486 ||| || ||||| |||||||| | |||||||| ||||| || || |||||||||||||| Sbjct: 91488 gtcccggcccgtcgggtccccgtcgatgttcgccgtcggtgtgcgccgcccctccggccg 91547 Query: 487 cgtccacggactcctcaatgtggccgctagcctggtcgctgcgccgccctctccggcggc 546 ||||||||| ||||| || ||||| || || || ||||| |||||||| || ||||| || Sbjct: 91548 cgtccacggcctccttaacgtggcggccagtctcgtcgccgcgccgccgtccccggcagc 91607 Query: 547 ctcccacgccctcagcctctcccccgccgtctctctcagtggcct 591 ||||||| ||| || |||||||||||||| ||||| ||||| Sbjct: 91608 tgcccacgctctccgctcatcccccgccgtctccctcagcggcct 91652 Score = 123 bits (62), Expect = 2e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 833 atgggcggggtgatgttttgcgggccttgtgtcttaccattcccgaggaagattcacacc 892 |||||||||||| ||||||||||||||||| || ||||||| || || ||||| |||| Sbjct: 91864 atgggcggggtggtgttttgcgggccttgtatcctaccattaccaagaaagatccacata 91923 Query: 893 agtccctctgacgagaacctgcaggccttcgctggcatcttctctagcggtgtcggcatt 952 || |||||||||||||||||||||||||| ||| |||||||||| |||| || |||||| Sbjct: 91924 agcccctctgacgagaacctgcaggcctttgctagcatcttctccggcggagttggcatt 91983 Query: 953 gccagacggagccc 966 |||||| |||||| Sbjct: 91984 accagacagagccc 91997 Score = 71.9 bits (36), Expect = 5e-09 Identities = 95/114 (83%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 609 tcagcagcctctccacggcgcccatctcag---gccgcgtgctgcgcgtcctcaaccgcg 665 ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct: 91643 tcagcggcctctccacggcgcccatcccagcaggccgcgtgctccgcgtcctcaaccgct 91702 Query: 666 cgcacccaacacccccaccttctcctaaggtgctcacgcccaagaagctgcaga 719 || || || |||||||| ||||| | ||| || ||| ||||||||| ||||| Sbjct: 91703 cgtttccgacgcccccaccctctccgacggttcttacgaccaagaagcagcaga 91756
>dbj|AK109718.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A02, full insert sequence Length = 1354 Score = 394 bits (199), Expect = e-106 Identities = 444/525 (84%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 70 ggcgccggacgaggaggccggactggggctcccggaggacgagcggcttctggaggtcac 129 ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||||| Sbjct: 141 ggcgccggacgaggaggccgggctggcgctccccgagggcgagcggattctggaggtcac 200 Query: 130 catcatctccgcgcaggggctgaagccgccttctggacttcggcggcggttgc---aggc 186 | ||||||||||||||||||||||||| || || || || ||||||||| ||| |||| Sbjct: 201 cctcatctccgcgcaggggctgaagcctccctccggcctgcggcggcggctgctgcaggc 260 Query: 187 gtacgccgtggcgtgggttgacacggcgcacaggctccagacgcaacccgaccgctctgg 246 |||||||||||||||||| ||| |||||| |||||||||||||| || |||||| | || Sbjct: 261 gtacgccgtggcgtgggtggacgcggcgcgcaggctccagacgcggccggaccgcgcggg 320 Query: 247 cggcctcgatccggcttggcacgagcggttcctcttccgcgtgcacgaagccgcgctcgc 306 ||| |||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct: 321 cggggtcgacccggagtggcacgagcgcctcctcttccgcgtccacgaggccgcgctcgc 380 Query: 307 cgaggattcccgcgctgccgtcaccgtcgagatctacgcctcaccgaacggggcctggca 366 ||| || |||||||| |||||||||||||||||||||||| | || ||| | |||||| Sbjct: 381 cgacgactcccgcgccgccgtcaccgtcgagatctacgccgcgcccgccggcggctggca 440 Query: 367 catcggcggggactccctgatcggatcagcgcggttcctcctcggcgacaactgcctcct 426 |||||| |||||||||||| |||| || || |||||||| ||||||||| || ||||||| Sbjct: 441 catcgggggggactccctggtcggctccgcccggttcctgctcggcgaccacggcctcct 500 Query: 427 gtctcgccccgttgggtccccagccatgttcgcggtcggcgtccgacgcccctccggccg 486 ||| || ||||| |||||||| | |||||||| ||||| || || |||||||||||||| Sbjct: 501 gtcccggcccgtcgggtccccgtcgatgttcgccgtcggtgtgcgccgcccctccggccg 560 Query: 487 cgtccacggactcctcaatgtggccgctagcctggtcgctgcgccgccctctccggcggc 546 ||||||||| || || || ||||| || || || ||||| |||||||| || ||||| || Sbjct: 561 cgtccacggcctacttaacgtggcggccagtctcgtcgccgcgccgccgtccccggcagc 620 Query: 547 ctcccacgccctcagcctctcccccgccgtctctctcagtggcct 591 ||||||| ||| || |||||||||||||| ||||| ||||| Sbjct: 621 tgcccacgctctccgctcatcccccgccgtctccctcagcggcct 665 Score = 123 bits (62), Expect = 2e-24 Identities = 116/134 (86%) Strand = Plus / Plus Query: 833 atgggcggggtgatgttttgcgggccttgtgtcttaccattcccgaggaagattcacacc 892 |||||||||||| ||||||||||||||||| || ||||||| || || ||||| |||| Sbjct: 877 atgggcggggtggtgttttgcgggccttgtatcctaccattaccaagaaagatccacata 936 Query: 893 agtccctctgacgagaacctgcaggccttcgctggcatcttctctagcggtgtcggcatt 952 || |||||||||||||||||||||||||| ||| |||||||||| |||| || |||||| Sbjct: 937 agcccctctgacgagaacctgcaggcctttgctagcatcttctccggcggagttggcatt 996 Query: 953 gccagacggagccc 966 |||||| |||||| Sbjct: 997 accagacagagccc 1010 Score = 71.9 bits (36), Expect = 5e-09 Identities = 95/114 (83%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 609 tcagcagcctctccacggcgcccatctcag---gccgcgtgctgcgcgtcctcaaccgcg 665 ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct: 656 tcagcggcctctccacggcgcccatcccagcaggccgcgtgctccgcgtcctcaaccgct 715 Query: 666 cgcacccaacacccccaccttctcctaaggtgctcacgcccaagaagctgcaga 719 || || || |||||||| ||||| | ||| || ||| ||||||||| ||||| Sbjct: 716 cgtttccgacgcccccaccctctccgacggttcttacgaccaagaagcagcaga 769
>gb|CP000433.1| Rhodococcus sp. RHA1 plasmid pRHL2, complete sequence Length = 442536 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 ccgccttctggacttcggcggc 176 |||||||||||||||||||||| Sbjct: 285044 ccgccttctggacttcggcggc 285065
>gb|AC007211.6| Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence Length = 103889 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1144 caccattttttgtgtatgaattcaat 1169 ||||||||||||||||| |||||||| Sbjct: 38765 caccattttttgtgtataaattcaat 38790
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 attcccgcgctgccgtcaccg 332 ||||||||||||||||||||| Sbjct: 4258291 attcccgcgctgccgtcaccg 4258271
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 acgaagccgcgctcgccgagg 311 ||||||||||||||||||||| Sbjct: 4656848 acgaagccgcgctcgccgagg 4656828
>ref|NM_001075025.1| Oryza sativa (japonica cultivar-group) Os11g0691500 (Os11g0691500) mRNA, complete cds Length = 2121 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||||||||| ||||||| Sbjct: 1321 gacaaccagcaggttgctgtgaagc 1345
>ref|NM_001055034.1| Oryza sativa (japonica cultivar-group) Os02g0815100 (Os02g0815100) mRNA, complete cds Length = 1195 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 gaggtcaccatcatctccgcgcagg 146 ||||||||| ||||||||||||||| Sbjct: 118 gaggtcaccgtcatctccgcgcagg 142
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ccggcggcctcccacgccctc 559 ||||||||||||||||||||| Sbjct: 20091665 ccggcggcctcccacgccctc 20091645
>ref|XM_001092813.1| PREDICTED: Macaca mulatta similar to spermatogenesis associated 18 homolog (LOC698868), mRNA Length = 4319 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 975 ggcactgagcttatgcaaaac 995 ||||||||||||||||||||| Sbjct: 3072 ggcactgagcttatgcaaaac 3052
>gb|BT023890.1| Drosophila melanogaster LP23252 full insert cDNA Length = 4431 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 539 ccggcggcctcccacgccctc 559 ||||||||||||||||||||| Sbjct: 2522 ccggcggcctcccacgccctc 2542
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15 map near R3342S, complete sequence Length = 140142 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||| ||||||||||||| Sbjct: 19562 gacaaccagcaagttgcggtgaagc 19538
>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13 map near R3342S, complete sequence Length = 135684 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||||||||| ||||||| Sbjct: 59859 gacaaccagcaggttgctgtgaagc 59883 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||||||||| ||||||| Sbjct: 91514 gacaaccagcaggttgctgtgaagc 91538
>gb|AF362517.1| Campoletis sonorensis ichnovirus segment M, complete sequence Length = 10223 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1039 atctgtttcttgttcttgtgg 1059 ||||||||||||||||||||| Sbjct: 1460 atctgtttcttgttcttgtgg 1440
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 77973 agcgccgccgctcgccggcga 77953
>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 208686 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1123 gctattattgcaagtatagta 1143 ||||||||||||||||||||| Sbjct: 195345 gctattattgcaagtatagta 195325
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagaaaccctagcgccgccgc 55 ||||||||||||||||||||| Sbjct: 2005128 aagaaaccctagcgccgccgc 2005108 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 12051067 agcgccgccgctcgccggcga 12051047
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||||||||| ||||||| Sbjct: 27523732 gacaaccagcaggttgctgtgaagc 27523756 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||||||||| ||||||| Sbjct: 27555387 gacaaccagcaggttgctgtgaagc 27555411 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 gacaaccagcaggttgcggtgaagc 773 ||||||||||| ||||||||||||| Sbjct: 27702411 gacaaccagcaagttgcggtgaagc 27702435
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 19699539 agcgccgccgctcgccggcga 19699559
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gcgccgccgctcgccggcgat 66 ||||||||||||||||||||| Sbjct: 8204152 gcgccgccgctcgccggcgat 8204132
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 15950438 agcgccgccgctcgccggcga 15950458
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gcgccgccgctcgccggcgat 66 ||||||||||||||||||||| Sbjct: 8054645 gcgccgccgctcgccggcgat 8054665
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagaaaccctagcgccgccgc 55 ||||||||||||||||||||| Sbjct: 19700719 aagaaaccctagcgccgccgc 19700699 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 gaggtcaccatcatctccgcgcagg 146 ||||||||| ||||||||||||||| Sbjct: 34939152 gaggtcaccgtcatctccgcgcagg 34939176
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gcgccgccgctcgccggcgat 66 ||||||||||||||||||||| Sbjct: 116769 gcgccgccgctcgccggcgat 116789
>emb|AJ000884.1|PDJ000884 Paracoccus denitrificans, MxaA, MxaC, MxaK, MxaL, MxaD and orf's Length = 5962 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 904 cgagaacctgcaggccttcgc 924 ||||||||||||||||||||| Sbjct: 5569 cgagaacctgcaggccttcgc 5589
>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1066G12 Length = 136263 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 131115 agcgccgccgctcgccggcga 131095
>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1008C01 Length = 144141 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 42481 agcgccgccgctcgccggcga 42461
>gb|AC009460.4|AC009460 Drosophila melanogaster, chromosome 2R, region 60B-60C, BAC clone BACR04P18, complete sequence Length = 159455 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ccggcggcctcccacgccctc 559 ||||||||||||||||||||| Sbjct: 27002 ccggcggcctcccacgccctc 26982
>gb|AC012167.5|AC012167 Drosophila melanogaster, chromosome 2R, region 60B-60C, BAC clone BACR27M17, complete sequence Length = 164443 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ccggcggcctcccacgccctc 559 ||||||||||||||||||||| Sbjct: 147607 ccggcggcctcccacgccctc 147587
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 ctcgccggcgatggaggcgccggac 79 ||||||||||||||||| ||||||| Sbjct: 5084418 ctcgccggcgatggaggagccggac 5084394
>gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, complete sequence Length = 168991 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 550 ccacgccctcagcctctcccccgccgtct 578 |||||| ||||||||||| |||||||||| Sbjct: 105533 ccacgcactcagcctctcgcccgccgtct 105561
>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031P18 Length = 156535 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 83887 agcgccgccgctcgccggcga 83907
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgctcgccggcgatg 67 ||||||||||||||||||||| Sbjct: 99754 cgccgccgctcgccggcgatg 99734
>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23 Length = 180188 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 agcgccgccgctcgccggcga 65 ||||||||||||||||||||| Sbjct: 163441 agcgccgccgctcgccggcga 163461
>dbj|AP005687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0019B22 Length = 137457 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gcgccgccgctcgccggcgat 66 ||||||||||||||||||||| Sbjct: 127577 gcgccgccgctcgccggcgat 127557
>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450F09 Length = 148752 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gcgccgccgctcgccggcgat 66 ||||||||||||||||||||| Sbjct: 28074 gcgccgccgctcgccggcgat 28054
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagaaaccctagcgccgccgc 55 ||||||||||||||||||||| Sbjct: 57477 aagaaaccctagcgccgccgc 57457
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagaaaccctagcgccgccgc 55 ||||||||||||||||||||| Sbjct: 9270 aagaaaccctagcgccgccgc 9250
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 gaggtcaccatcatctccgcgcagg 146 ||||||||| ||||||||||||||| Sbjct: 98649 gaggtcaccgtcatctccgcgcagg 98673
>dbj|AK108780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A04, full insert sequence Length = 1195 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 gaggtcaccatcatctccgcgcagg 146 ||||||||| ||||||||||||||| Sbjct: 118 gaggtcaccgtcatctccgcgcagg 142
>gb|AC004813.2|AC004813 Homo sapiens clone 277F10, complete sequence Length = 108969 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1123 gctattattgcaagtatagta 1143 ||||||||||||||||||||| Sbjct: 47690 gctattattgcaagtatagta 47670
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 971 cctcggcactgagcttatgcaaaac 995 |||||||| |||||||||||||||| Sbjct: 3868745 cctcggcaatgagcttatgcaaaac 3868721
>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158885 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagaaaccctagcgccgccgc 55 ||||||||||||||||||||| Sbjct: 36021 aagaaaccctagcgccgccgc 36001
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgctcgccggcgatg 67 ||||||||||||||||||||| Sbjct: 50498 cgccgccgctcgccggcgatg 50478
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgctcgccggcgatg 67 ||||||||||||||||||||| Sbjct: 86882 cgccgccgctcgccggcgatg 86862 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 175,488,414 Number of extensions: 9142222 Number of successful extensions: 199626 Number of sequences better than 10.0: 48 Number of HSP's gapped: 199611 Number of HSP's successfully gapped: 65 Length of query: 1199 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1176 Effective length of database: 18,503,978,556 Effective search space: 21760678781856 Effective search space used: 21760678781856 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
