ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf38l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8WXE0:CSKI2_HUMAN Caskin-2 - Homo sapiens (Human) 35 1.7
2Q66F60:IF2_YERPS Translation initiation factor IF-2 - Yersinia p... 33 6.4
3Q8ZBC2:IF2_YERPE Translation initiation factor IF-2 - Yersinia p... 33 6.4
4Q5HAL5:SYD_EHRRW Aspartyl-tRNA synthetase - Ehrlichia ruminantiu... 33 8.3
5Q5FG09:SYD_EHRRG Aspartyl-tRNA synthetase - Ehrlichia ruminantiu... 33 8.3

>Q8WXE0:CSKI2_HUMAN Caskin-2 - Homo sapiens (Human)|
          Length = 1202
 Score = 35.0 bits (79), Expect = 1.7
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 6    VYGPAPENNNARSQEGDRKYHSSLRHRTRSEMATPSPLP----PAGEVIEVENSEPG 164
            V GP+PE        G ++  +  R RT SE A PS  P    PAG   + E  EPG
Sbjct: 879  VSGPSPEPPPLDGSPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPG 935



to top

>Q66F60:IF2_YERPS Translation initiation factor IF-2 - Yersinia pseudotuberculosis|
          Length = 892

 Score = 33.1 bits (74), Expect = 6.4
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +3

Query: 396 VEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAEYDLTRG 575
           VEE  R+KV      V +   K+    +G           KW E   +  + A+Y +T  
Sbjct: 187 VEEETRRKVEEDAKRVAEEARKMAAENEG-----------KWPEPVAEQTESADYHVTTS 235

Query: 576 VNWKRLQSENEFNLDGHRPRVRRGLGKLVRIGKGPEM 686
            + +  + EN+  ++G R    RG GK  +  KG ++
Sbjct: 236 QHARAAEDENDAKVEGDRRSRTRG-GKATKQKKGNKL 271



to top

>Q8ZBC2:IF2_YERPE Translation initiation factor IF-2 - Yersinia pestis|
          Length = 892

 Score = 33.1 bits (74), Expect = 6.4
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +3

Query: 396 VEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAEYDLTRG 575
           VEE  R+KV      V +   K+    +G           KW E   +  + A+Y +T  
Sbjct: 187 VEEETRRKVEEDAKRVAEEARKMAAENEG-----------KWPEPVAEQTESADYHVTTS 235

Query: 576 VNWKRLQSENEFNLDGHRPRVRRGLGKLVRIGKGPEM 686
            + +  + EN+  ++G R    RG GK  +  KG ++
Sbjct: 236 QHARAAEDENDAKVEGDRRSRTRG-GKATKQKKGNKL 271



to top

>Q5HAL5:SYD_EHRRW Aspartyl-tRNA synthetase - Ehrlichia ruminantium (strain Welgevonden)|
          Length = 590

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +3

Query: 2028 VNLQVPAKPNYNLVMYYAAEKPVNKGSLLGRFIDGTDAFRDARFKLIPSIVEGYWMVKRA 2207
            +N + P    ++ ++YY ++KP  +  L+ +  D T+ FRD+ FK+  S ++   MV RA
Sbjct: 270  INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIK-QGMVVRA 326

Query: 2208 V 2210
            +
Sbjct: 327  I 327



to top

>Q5FG09:SYD_EHRRG Aspartyl-tRNA synthetase - Ehrlichia ruminantium (strain Gardel)|
          Length = 590

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +3

Query: 2028 VNLQVPAKPNYNLVMYYAAEKPVNKGSLLGRFIDGTDAFRDARFKLIPSIVEGYWMVKRA 2207
            +N + P    ++ ++YY ++KP  +  L+ +  D T+ FRD+ FK+  S ++   MV RA
Sbjct: 270  INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIK-QGMVVRA 326

Query: 2208 V 2210
            +
Sbjct: 327  I 327


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 476,043,358
Number of extensions: 10608451
Number of successful extensions: 28794
Number of sequences better than 10.0: 5
Number of HSP's gapped: 28760
Number of HSP's successfully gapped: 5
Length of query: 915
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 793
Effective length of database: 67,222,449
Effective search space: 53307402057
Effective search space used: 53307402057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top