ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf34k24 |
|---|---|
| Clone Library Name | barley_pub |
>P53603:FTCD_PIG Formimidoyltransferase-cyclodeaminase - Sus scrofa (Pig)| Length = 541 Score = 78.6 bits (192), Expect = 5e-14 Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 3/209 (1%) Frame = +2 Query: 233 SKVICCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSA 412 S+++ C SE +N ++DAISR + P VLL NR YT V Sbjct: 2 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFV------GRP 55 Query: 413 GEAVFGPIRKVLLEMIEAAFSAINLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQLAK 592 + V G L AA+ I++ H G HPR+G +D F P+ TM++ + A+ Sbjct: 56 EDVVEG-----ALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVR-GVTMDECVRCAQ 109 Query: 593 LVASDIGNGLQVPVFLYAAAHPTSKSVSAARRELGYYR---PNHKGVQWAGQVLPHTLPV 763 + L VPV+LY A T+ S G Y K +WA Sbjct: 110 AFGQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA---------- 159 Query: 764 KPDVGPAHVSRERGATMVGATPFVDNYNV 850 PD GP+ GAT+ GA F+ +N+ Sbjct: 160 -PDFGPSAFVPSWGATVAGARKFLLAFNI 187
>Q91XD4:FTCD_MOUSE Formimidoyltransferase-cyclodeaminase - Mus musculus (Mouse)| Length = 541 Score = 72.8 bits (177), Expect = 3e-12 Identities = 58/206 (28%), Positives = 84/206 (40%) Frame = +2 Query: 233 SKVICCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSA 412 S+++ C SE N ++DAISR + P VLL NR YT V Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISRAISQTPGCVLLDVDAGPSTNRTVYTFVGQPEC---- 57 Query: 413 GEAVFGPIRKVLLEMIEAAFSAINLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQLAK 592 + + L A I++ H G HPR+G +D F P+ +ME+ AK Sbjct: 58 -------VVEGALHAARTASQLIDMSKHKGEHPRMGALDVCPFIPVR-GVSMEECVLCAK 109 Query: 593 LVASDIGNGLQVPVFLYAAAHPTSKSVSAARRELGYYRPNHKGVQWAGQVLPHTLPVKPD 772 + L VPV+LY A T + G Y + ++ A V PD Sbjct: 110 AFGQRLAEELNVPVYLYGEAAQTPSRQTLPAIRAGEYEALPEKLKQAEWV--------PD 161 Query: 773 VGPAHVSRERGATMVGATPFVDNYNV 850 GP+ GAT+ GA F+ +N+ Sbjct: 162 FGPSSFVPSWGATVTGARKFLIAFNI 187
>O88618:FTCD_RAT Formimidoyltransferase-cyclodeaminase - Rattus norvegicus (Rat)| Length = 541 Score = 70.5 bits (171), Expect = 1e-11 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 2/208 (0%) Frame = +2 Query: 233 SKVICCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSA 412 S+++ C SE N ++DAIS+ + P VLL NR YT V Sbjct: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPEC---- 57 Query: 413 GEAVFGPIRKVLLEMIEAAFSAINLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQLAK 592 + + L A I+++ H G HPR+G +D F P+ +M++ AK Sbjct: 58 -------VVEGALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVR-GVSMDECVLCAK 109 Query: 593 LVASDIGNGLQVPVFLY--AAAHPTSKSVSAARRELGYYRPNHKGVQWAGQVLPHTLPVK 766 + L VPV+LY AA P+ +++ A R G Y + ++ A V Sbjct: 110 AFGQRLAEELNVPVYLYGEAAQMPSRQTLPAIR--AGEYEALPEKLKQAEWV-------- 159 Query: 767 PDVGPAHVSRERGATMVGATPFVDNYNV 850 PD GP+ GAT+ GA F+ +N+ Sbjct: 160 PDFGPSSFVPSWGATVTGARKFLIAFNI 187
>Q9YH58:FTCD_CHICK Formimidoyltransferase-cyclodeaminase - Gallus gallus (Chicken)| Length = 541 Score = 68.2 bits (165), Expect = 7e-11 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 3/213 (1%) Frame = +2 Query: 233 SKVICCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSA 412 +K++ C SE N +++A+ R + P LL NR YT V T E+ Sbjct: 2 AKLVECVPNFSEGCNKEVIEALGRAISQTPGCTLLDVDAGASTNRTVYTFVG--TPEAVV 59 Query: 413 GEAVFGPIRKVLLEMIEAAFSAINLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQLAK 592 A L A+ I++ H G HPR+G +D F P+ + ME+ A Sbjct: 60 EGA---------LSAARMAWELIDMSRHKGEHPRMGALDVCPFVPVMNIS-MEECVICAH 109 Query: 593 LVASDIGNGLQVPVFLYAAAHPTSKSVSAARRELGYYRPNHKGVQWAGQVLPHTLPVK-- 766 + + L VPV+LY AAR+E P + ++ + LP L Sbjct: 110 VFGQRLSEELGVPVYLYG---------EAARQESRRTLPAIRAGEY--EALPKKLEKPEW 158 Query: 767 -PDVGPAHVSRERGATMVGATPFVDNYNVPIFC 862 PD GP + GAT+ GA F+ YN+ + C Sbjct: 159 VPDFGPPAFVPQWGATVTGARTFLIAYNINLLC 191
>O95954:FTCD_HUMAN Formimidoyltransferase-cyclodeaminase - Homo sapiens (Human)| Length = 541 Score = 66.2 bits (160), Expect = 3e-10 Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 3/209 (1%) Frame = +2 Query: 233 SKVICCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSA 412 S+++ C SE +N ++DAIS + P VLL NR YT V Sbjct: 2 SQLVECVPNFSEGKNQEVIDAISGAITQTPGCVLLDVDAGPSTNRTVYTFV--------- 52 Query: 413 GEAVFGPIRKVLLEMIEAAFSA---INLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQ 583 GP V+ + AA A I++ H G HPR+G +D F P+ ++++ Sbjct: 53 -----GPPECVVEGALNAARVASRLIDMSRHQGEHPRMGALDVCPFIPVR-GVSVDECVL 106 Query: 584 LAKLVASDIGNGLQVPVFLYAAAHPTSKSVSAARRELGYYRPNHKGVQWAGQVLPHTLPV 763 A+ + L VPV+LY A + G Y K +Q A Sbjct: 107 CAQAFGQRLAEELDVPVYLYGEAARMDSRRTLPAIRAGEYEALPKKLQQADWA------- 159 Query: 764 KPDVGPAHVSRERGATMVGATPFVDNYNV 850 PD GP+ GAT GA F+ +N+ Sbjct: 160 -PDFGPSSFVPSWGATATGARKFLIAFNI 187
>Q90ZE2:ZN703_DANRE NocA-like zinc finger protein 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 589 Score = 34.7 bits (78), Expect = 0.88 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = -2 Query: 335 AEPPQGFSGLCG*----WHPQSPHSGFQRCKACSRSPWSALPSRLP 210 A PP GLC +P +PH G C +C P SAL S P Sbjct: 375 ASPPSFMQGLCRDPYCLTYPNAPHLGGSNCSSCVHDPSSALKSGFP 420 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 242,456,852 Number of extensions: 5695645 Number of successful extensions: 15776 Number of sequences better than 10.0: 6 Number of HSP's gapped: 15744 Number of HSP's successfully gapped: 6 Length of query: 429 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 313 Effective length of database: 68,868,219 Effective search space: 21555752547 Effective search space used: 21555752547 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
