ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf23k06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832714.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112A15, full insert sequence Length = 1567 Score = 507 bits (256), Expect = e-140 Identities = 415/468 (88%) Strand = Plus / Plus Query: 283 ccgccgccgcctacccggcggtgacgcgggaagatgcattggagctgtacgaggacatga 342 ||||||||||| || | || || ||||||||||| || ||||||||||||||||||||| Sbjct: 306 ccgccgccgcccactccgctgtcacgcgggaagaggctttggagctgtacgaggacatgg 365 Query: 343 ttcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttg 402 |||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 366 ttcttggccgtattttcgaggatatgtgcgcgcaaatgtactaccgtggcaagatgtttg 425 Query: 403 gttttgtccatctttacaacgggcaggaggccgtctccatcggcttcatcaagcagctca 462 ||||||||||| | ||||| ||||| || || ||||||| ||||||||||||| ||||| Sbjct: 426 gttttgtccatttatacaatgggcaagaagctgtctccactggcttcatcaagctgctca 485 Query: 463 accaacccgactgtgttgttagcacgtatcgtgaccatgtccacgcactgtccaagggtg 522 ||||| | ||||||||||| ||||| || |||||||| ||||| || || |||||||||| Sbjct: 486 accaagctgactgtgttgtcagcacataccgtgaccacgtccatgccctatccaagggtg 545 Query: 523 tcccagcccgtgaagtcatggccgagctctttggcaaggccactggctgctgccgtggac 582 |||| || ||| |||||||| ||||| || || ||||||||||||||||||||||||| Sbjct: 546 tccctgcacgttctgtcatggctgagcttttcggtaaggccactggctgctgccgtggac 605 Query: 583 agggtggttccatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 642 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 606 aaggtggttctatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 665 Query: 643 tcagcgagggcatccctgtcgccactggtgctgcctttgccgctaagtaccgccatgagg 702 || | |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| Sbjct: 666 tcggagagggcatccctgttgctactggtgctgcctttgctgctaaataccgccatgagg 725 Query: 703 tgctcaagcagtctagccctggtgggcttgatgtcacgcttgcattct 750 ||||||||||||||||||||| ||| |||||||| || || ||||||| Sbjct: 726 tgctcaagcagtctagccctgatggacttgatgtaaccctggcattct 773
>ref|NM_001058600.1| Oryza sativa (japonica cultivar-group) Os04g0119400 (Os04g0119400) mRNA, complete cds Length = 1734 Score = 507 bits (256), Expect = e-140 Identities = 415/468 (88%) Strand = Plus / Plus Query: 283 ccgccgccgcctacccggcggtgacgcgggaagatgcattggagctgtacgaggacatga 342 ||||||||||| || | || || ||||||||||| || ||||||||||||||||||||| Sbjct: 335 ccgccgccgcccactccgctgtcacgcgggaagaggctttggagctgtacgaggacatgg 394 Query: 343 ttcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttg 402 |||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 395 ttcttggccgtattttcgaggatatgtgcgcgcaaatgtactaccgtggcaagatgtttg 454 Query: 403 gttttgtccatctttacaacgggcaggaggccgtctccatcggcttcatcaagcagctca 462 ||||||||||| | ||||| ||||| || || ||||||| ||||||||||||| ||||| Sbjct: 455 gttttgtccatttatacaatgggcaagaagctgtctccactggcttcatcaagctgctca 514 Query: 463 accaacccgactgtgttgttagcacgtatcgtgaccatgtccacgcactgtccaagggtg 522 ||||| | ||||||||||| ||||| || |||||||| ||||| || || |||||||||| Sbjct: 515 accaagctgactgtgttgtcagcacataccgtgaccacgtccatgccctatccaagggtg 574 Query: 523 tcccagcccgtgaagtcatggccgagctctttggcaaggccactggctgctgccgtggac 582 |||| || ||| |||||||| ||||| || || ||||||||||||||||||||||||| Sbjct: 575 tccctgcacgttctgtcatggctgagcttttcggtaaggccactggctgctgccgtggac 634 Query: 583 agggtggttccatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 642 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 635 aaggtggttctatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 694 Query: 643 tcagcgagggcatccctgtcgccactggtgctgcctttgccgctaagtaccgccatgagg 702 || | |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| Sbjct: 695 tcggagagggcatccctgttgctactggtgctgcctttgctgctaaataccgccatgagg 754 Query: 703 tgctcaagcagtctagccctggtgggcttgatgtcacgcttgcattct 750 ||||||||||||||||||||| ||| |||||||| || || ||||||| Sbjct: 755 tgctcaagcagtctagccctgatggacttgatgtaaccctggcattct 802
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 502 bits (253), Expect = e-138 Identities = 397/445 (89%) Strand = Plus / Plus Query: 306 acgcgggaagatgcattggagctgtacgaggacatgattcttggccgtaactccgaggac 365 ||||||||||| || ||||||||||||||||||||| |||||||||||| | |||||| Sbjct: 1124217 acgcgggaagaggctttggagctgtacgaggacatggttcttggccgtattttcgaggat 1124276 Query: 366 atgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaacggg 425 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct: 1124277 atgtgcgcgcaaatgtactaccgtggcaagatgtttggttttgtccatttatacaatggg 1124336 Query: 426 caggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgttagc 485 || || || ||||||| ||||||||||||| |||||||||| | ||||||||||| ||| Sbjct: 1124337 caagaagctgtctccactggcttcatcaagctgctcaaccaagctgactgtgttgtcagc 1124396 Query: 486 acgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatggcc 545 || || |||||||| ||||| || || |||||||||||||| || ||| |||||||| Sbjct: 1124397 acataccgtgaccacgtccatgccctatccaagggtgtccctgcacgttctgtcatggct 1124456 Query: 546 gagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatgttc 605 ||||| || || |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1124457 gagcttttcggtaaggccactggctgctgccgtggacaaggtggttctatgcacatgttc 1124516 Query: 606 tctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtcgcc 665 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || Sbjct: 1124517 tctgaaccccacaacctccttggaggttttgccttcatcggagagggcatccctgttgct 1124576 Query: 666 actggtgctgcctttgccgctaagtaccgccatgaggtgctcaagcagtctagccctggt 725 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | Sbjct: 1124577 actggtgctgcctttgctgctaaataccgccatgaggtgctcaagcagtctagccctgat 1124636 Query: 726 gggcttgatgtcacgcttgcattct 750 || |||||||| || || ||||||| Sbjct: 1124637 ggacttgatgtaaccctggcattct 1124661
>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07, complete sequence Length = 167895 Score = 502 bits (253), Expect = e-138 Identities = 397/445 (89%) Strand = Plus / Plus Query: 306 acgcgggaagatgcattggagctgtacgaggacatgattcttggccgtaactccgaggac 365 ||||||||||| || ||||||||||||||||||||| |||||||||||| | |||||| Sbjct: 66599 acgcgggaagaggctttggagctgtacgaggacatggttcttggccgtattttcgaggat 66658 Query: 366 atgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaacggg 425 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct: 66659 atgtgcgcgcaaatgtactaccgtggcaagatgtttggttttgtccatttatacaatggg 66718 Query: 426 caggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgttagc 485 || || || ||||||| ||||||||||||| |||||||||| | ||||||||||| ||| Sbjct: 66719 caagaagctgtctccactggcttcatcaagctgctcaaccaagctgactgtgttgtcagc 66778 Query: 486 acgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatggcc 545 || || |||||||| ||||| || || |||||||||||||| || ||| |||||||| Sbjct: 66779 acataccgtgaccacgtccatgccctatccaagggtgtccctgcacgttctgtcatggct 66838 Query: 546 gagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatgttc 605 ||||| || || |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 66839 gagcttttcggtaaggccactggctgctgccgtggacaaggtggttctatgcacatgttc 66898 Query: 606 tctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtcgcc 665 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || Sbjct: 66899 tctgaaccccacaacctccttggaggttttgccttcatcggagagggcatccctgttgct 66958 Query: 666 actggtgctgcctttgccgctaagtaccgccatgaggtgctcaagcagtctagccctggt 725 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | Sbjct: 66959 actggtgctgcctttgctgctaaataccgccatgaggtgctcaagcagtctagccctgat 67018 Query: 726 gggcttgatgtcacgcttgcattct 750 || |||||||| || || ||||||| Sbjct: 67019 ggacttgatgtaaccctggcattct 67043
>dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M21, full insert sequence Length = 1736 Score = 500 bits (252), Expect = e-138 Identities = 414/468 (88%) Strand = Plus / Plus Query: 283 ccgccgccgcctacccggcggtgacgcgggaagatgcattggagctgtacgaggacatga 342 ||||||||||| || | || || ||||||||||| || ||||||||||||||||||||| Sbjct: 337 ccgccgccgcccactccgctgtcacgcgggaagaggctttggagctgtacgaggacatgg 396 Query: 343 ttcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttg 402 |||||||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct: 397 ttcttggccgtattttcgaggatatgtgcgcgcaaatgtactaccgtggcaaaatgtttg 456 Query: 403 gttttgtccatctttacaacgggcaggaggccgtctccatcggcttcatcaagcagctca 462 ||||||||||| | ||||| ||||| || || ||||||| ||||||||||||| ||||| Sbjct: 457 gttttgtccatttatacaatgggcaagaagctgtctccactggcttcatcaagctgctca 516 Query: 463 accaacccgactgtgttgttagcacgtatcgtgaccatgtccacgcactgtccaagggtg 522 ||||| | ||||||||||| ||||| || |||||||| ||||| || || |||||||||| Sbjct: 517 accaagctgactgtgttgtcagcacataccgtgaccacgtccatgccctatccaagggtg 576 Query: 523 tcccagcccgtgaagtcatggccgagctctttggcaaggccactggctgctgccgtggac 582 |||| || ||| |||||||| ||||| || || ||||||||||||||||||||||||| Sbjct: 577 tccctgcacgttctgtcatggctgagcttttcggtaaggccactggctgctgccgtggac 636 Query: 583 agggtggttccatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 642 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 aaggtggttctatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 696 Query: 643 tcagcgagggcatccctgtcgccactggtgctgcctttgccgctaagtaccgccatgagg 702 || | |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| Sbjct: 697 tcggagagggcatccctgttgctactggtgctgcctttgctgctaaataccgccatgagg 756 Query: 703 tgctcaagcagtctagccctggtgggcttgatgtcacgcttgcattct 750 ||||||||||||||||||||| ||| |||||||| || || ||||||| Sbjct: 757 tgctcaagcagtctagccctgatggacttgatgtaaccctggcattct 804
>gb|AY103738.1| Zea mays PCO146589 mRNA sequence Length = 1787 Score = 470 bits (237), Expect = e-129 Identities = 402/457 (87%) Strand = Plus / Plus Query: 283 ccgccgccgcctacccggcggtgacgcgggaagatgcattggagctgtacgaggacatga 342 |||||||||| | |||||||| || |||||||| ||| |||||||||| ||||||||| Sbjct: 455 ccgccgccgcgcatccggcggttacccgggaagaggcactggagctgtatgaggacatgg 514 Query: 343 ttcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttg 402 ||||||||||| | |||||||||||| || || ||||||||||||||||||||||||| Sbjct: 515 ttcttggccgtgtattcgaggacatgtgtgcacaaatgtactaccgtggcaagatgtttg 574 Query: 403 gttttgtccatctttacaacgggcaggaggccgtctccatcggcttcatcaagcagctca 462 |||| ||||| |||||||| || |||||||| ||||||| ||||||||||| | || | Sbjct: 575 gtttcgtccacctttacaatggccaggaggctgtctccactggcttcatcaaacttctga 634 Query: 463 accaacccgactgtgttgttagcacgtatcgtgaccatgtccacgcactgtccaagggtg 522 ||||| | ||||||||||||||||| || ||||| |||||||| || ||||||||||||| Sbjct: 635 accaagctgactgtgttgttagcacataccgtgatcatgtccatgcgctgtccaagggtg 694 Query: 523 tcccagcccgtgaagtcatggccgagctctttggcaaggccactggctgctgccgtggac 582 |||| || ||| |||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 695 tcccggcacgttctgtcatggctgagctctttggcaaggccacaggctgctgccgtggac 754 Query: 583 agggtggttccatgcacatgttctctgaaccccacaacctccttggaggttttgccttca 642 ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| Sbjct: 755 agggtggttccatgcacatgttctctgctccccacaacctcctgggaggctttgccttca 814 Query: 643 tcagcgagggcatccctgtcgccactggtgctgcctttgccgctaagtaccgccatgagg 702 || | |||||||| ||||| ||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 815 tcggagagggcattcctgttgccactggtgcagcctttgctgctaagtaccgtcatgagg 874 Query: 703 tgctcaagcagtctagccctggtgggcttgatgtcac 739 |||||||| ||||| |||||| ||||||||||||||| Sbjct: 875 tgctcaaggagtctggccctgatgggcttgatgtcac 911 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 106 agatggcggccgcctacttcaccgtcgccaagtgcgtggcgccggtggcagccagatccg 165 ||||||||||||| | |||||||| |||||||| | ||||||||||||| || ||||||| Sbjct: 248 agatggcggccgcgtccttcaccgccgccaagttcctggcgccggtggccgcgagatccg 307
>gb|AF358778.1| Oryza sativa clone Osch141 pyruvate dehydrogenase E1 alpha subunit mRNA, partial cds Length = 380 Score = 414 bits (209), Expect = e-112 Identities = 329/369 (89%) Strand = Plus / Plus Query: 382 actaccgtggcaagatgtttggttttgtccatctttacaacgggcaggaggccgtctcca 441 |||||||||||||||||||||||||||||||| | ||||| ||||| || || ||||||| Sbjct: 1 actaccgtggcaagatgtttggttttgtccatttatacaatgggcaagaagctgtctcca 60 Query: 442 tcggcttcatcaagcagctcaaccaacccgactgtgttgttagcacgtatcgtgaccatg 501 ||||||||||||| |||||||||| | ||||||||||| ||||| || |||||||| | Sbjct: 61 ctggcttcatcaagctgctcaaccaagctgactgtgttgtcagcacataccgtgaccacg 120 Query: 502 tccacgcactgtccaagggtgtcccagcccgtgaagtcatggccgagctctttggcaagg 561 |||| || || |||||||||||||| || ||| |||||||| ||||| || || |||| Sbjct: 121 tccatgccctatccaagggtgtccctgcacgttctgtcatggctgagcttttcggtaagg 180 Query: 562 ccactggctgctgccgtggacagggtggttccatgcacatgttctctgaaccccacaacc 621 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 181 ccactggctgctgccgtggacaaggtggttctatgcacatgttctctgaaccccacaacc 240 Query: 622 tccttggaggttttgccttcatcagcgagggcatccctgtcgccactggtgctgcctttg 681 ||||||||||||||||||||||| | |||||||||||||| || |||||||||||||||| Sbjct: 241 tccttggaggttttgccttcatcggagagggcatccctgttgctactggtgctgcctttg 300 Query: 682 ccgctaagtaccgccatgaggtgctcaagcagtctagccctggtgggcttgatgtcacgc 741 | ||||| |||||||||||||||||||||||||||||||||| ||| |||||||| || | Sbjct: 301 ctgctaaataccgccatgaggtgctcaagcagtctagccctgatggacttgatgtaaccc 360 Query: 742 ttgcattct 750 | ||||||| Sbjct: 361 tggcattct 369
>gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence Length = 1692 Score = 87.7 bits (44), Expect = 7e-14 Identities = 161/200 (80%) Strand = Plus / Plus Query: 480 gttagcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtc 539 |||||||| |||||||| || ||||| ||| || ||| || || ||||| ||| |||| Sbjct: 558 gttagcacttatcgtgatcacgtccatgcattgagcaaaggggttccagcacgtcaagtg 617 Query: 540 atggccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcac 599 ||| |||||||||||| ||| |||||||||| ||| | || |||||||| ||||||||| Sbjct: 618 atgagcgagctctttgggaagaccactggctgttgcagaggccagggtggctccatgcac 677 Query: 600 atgttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccct 659 ||||||||| || |||||| | ||||| ||||| || ||||| | ||||| |||||| Sbjct: 678 atgttctctaaagagcacaacgttcttggtggtttcgctttcattggtgagggtatccct 737 Query: 660 gtcgccactggtgctgcctt 679 || || || ||||| ||||| Sbjct: 738 gtggcaacaggtgccgcctt 757 Score = 48.1 bits (24), Expect = 0.060 Identities = 66/80 (82%) Strand = Plus / Plus Query: 360 gaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttac 419 ||||||||||| || || ||||| ||| | || || |||||||||||||| ||| | ||| Sbjct: 438 gaggacatgtgtgcccaaatgtattacaggggaaaaatgtttggttttgtgcatttgtac 497 Query: 420 aacgggcaggaggccgtctc 439 ||||| || ||||| ||||| Sbjct: 498 aacggccaagaggcagtctc 517
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 83.8 bits (42), Expect = 1e-12 Identities = 69/78 (88%) Strand = Plus / Plus Query: 359 cgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatcttta 418 |||||||| ||||||| ||||||||||||| ||||||||||| || || || ||||| || Sbjct: 167499 cgaggacaagtgcgcggagatgtactaccgcggcaagatgttcgggttcgttcatctcta 167558 Query: 419 caacgggcaggaggccgt 436 |||||| ||||||||||| Sbjct: 167559 caacggtcaggaggccgt 167576
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 83.8 bits (42), Expect = 1e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 369 tgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaacgggcag 428 ||||| |||||||||||||| |||||| |||| ||||| |||||||| |||||||| ||| Sbjct: 3031150 tgcgcccagatgtactaccgcggcaagttgttcggtttcgtccatctctacaacggccag 3031209 Query: 429 gaggccgtctccatcggcttcatcaa 454 || |||||||||| ||| ||||||| Sbjct: 3031210 gaagccgtctccaccggaatcatcaa 3031235 Score = 81.8 bits (41), Expect = 4e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 359 cgaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatcttta 418 |||||||| ||||| |||||||||||||| ||||||||||| || ||||| || || || Sbjct: 1649991 cgaggacacctgcgcccagatgtactaccgcggcaagatgttcggctttgtgcacctcta 1650050 Query: 419 caacgggcaggaggccgtctccatcggcttcatcaag 455 |||||| ||||| |||||||||| ||| |||||||| Sbjct: 1650051 caacggtcaggaagccgtctccacaggcgtcatcaag 1650087
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 81.8 bits (41), Expect = 4e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 333 gaggacatgattcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggc 392 ||||||||| |||| ||||| | || |||||||| ||| ||| ||||||| ||||| ||| Sbjct: 2298570 gaggacatggttctaggccgcaccttcgaggacaagtgtgcggagatgtattaccgcggc 2298511 Query: 393 aagatgtttggttttgtccatctttacaacgggcaggaggc 433 ||||||||||| || ||||| || ||||||||||| ||||| Sbjct: 2298510 aagatgtttggcttcgtccacctctacaacgggcaagaggc 2298470
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 81.8 bits (41), Expect = 4e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 333 gaggacatgattcttggccgtaactccgaggacatgtgcgcgcagatgtactaccgtggc 392 ||||||||| |||| ||||| | || |||||||| ||| ||| ||||||| ||||| ||| Sbjct: 2018467 gaggacatggttctaggccgcaccttcgaggacaagtgtgcggagatgtattaccgcggc 2018526 Query: 393 aagatgtttggttttgtccatctttacaacgggcaggaggc 433 ||||||||||| || ||||| || ||||||||||| ||||| Sbjct: 2018527 aagatgtttggcttcgtccacctctacaacgggcaagaggc 2018567
>dbj|AK226909.1| Arabidopsis thaliana mRNA for pyruvate dehydrogenase E1 alpha subunit, complete cds, clone: RAFL09-16-O16 Length = 1634 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 412 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 471 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 472 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 531 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 532 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 591 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 592 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 651 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 652 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 711 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 712 gccactggtgctgccttt 729
>ref|NM_099991.2| Arabidopsis thaliana PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acc> (PDH-E1 ALPHA) mRNA, complete cds Length = 1620 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 408 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 467 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 468 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 527 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 528 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 587 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 588 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 647 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 648 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 707 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 708 gccactggtgctgccttt 725
>gb|U80185.1|ATU80185 Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA, nuclear gene encoding plastid protein, complete cds Length = 1541 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 412 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 471 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 472 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 531 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 532 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 591 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 592 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 651 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 652 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 711 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 712 gccactggtgctgccttt 729
>gb|AY063724.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds Length = 1287 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 295 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 354 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 355 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 414 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 415 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 474 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 475 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 534 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 535 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 594 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 595 gccactggtgctgccttt 612
>gb|AY052721.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds Length = 1610 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 410 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 469 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 470 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 529 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 530 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 589 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 590 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 649 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 650 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 709 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 710 gccactggtgctgccttt 727
>emb|BX815342.1|CNS0ACRT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1557 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 400 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 459 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 460 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 519 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 520 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 579 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 580 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 639 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 640 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 699 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 700 gccactggtgctgccttt 717
>emb|BX815751.1|CNS0ACSX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZB04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1472 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 396 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 455 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 456 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 515 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 516 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 575 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 576 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 635 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 636 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 695 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 696 gccactggtgctgccttt 713
>gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence Length = 86436 Score = 75.8 bits (38), Expect = 3e-10 Identities = 248/318 (77%) Strand = Plus / Minus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 48491 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 48432 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 48431 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 48372 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 48371 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 48312 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 48311 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 48252 Query: 603 ttctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtc 662 ||||| || |||||| | ||||| || ||||| || || | || ||||| |||||| Sbjct: 48251 ttctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtc 48192 Query: 663 gccactggtgctgccttt 680 |||||||||||||||||| Sbjct: 48191 gccactggtgctgccttt 48174
>emb|BX813802.1|CNS0ADI5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1436 Score = 71.9 bits (36), Expect = 4e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 545 cgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatgtt 604 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||||| Sbjct: 567 cgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatgtt 626 Query: 605 ctctgaaccccacaacctccttggaggttttgccttcatcagcgagggcatccctgtcgc 664 ||| || |||||| | ||||| || ||||| || || | || ||||| |||||||| Sbjct: 627 ctccaaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtcgc 686 Query: 665 cactggtgctgccttt 680 |||||||||||||||| Sbjct: 687 cactggtgctgccttt 702 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgt 409 |||||||| || || ||||| ||||| |||||||||||||||||||| Sbjct: 384 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgt 430
>gb|CP000435.1| Synechococcus sp. CC9311, complete genome Length = 2606748 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||| ||||||| ||||||||||||| ||||| ||||||||||| || || || |||||| Sbjct: 715200 gacaagtgcgcggagatgtactaccgcggcaaaatgtttggtttcgttcacctgtacaac 715141 Query: 423 gggcaggaggccgt 436 || || |||||||| Sbjct: 715140 ggccaagaggccgt 715127
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 61.9 bits (31), Expect = 4e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 376 agatgtactaccgtggcaagatgtttggttttgtccatctttacaacgggcagga 430 ||||||| ||||| ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 2230608 agatgtattaccggggcaaaatgtttggttttgtccacctctacaacggccagga 2230662
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Plus Query: 360 gaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttac 419 ||||||| |||||| | ||||||||| ||||||||||| || ||||| || || ||| Sbjct: 535212 gaggacaagtgcgccgaaatgtactacaagggcaagatgttcggctttgtgcacctgtac 535271 Query: 420 aacgggcaggaggccgtctcca 441 ||||||||||| |||||||||| Sbjct: 535272 aacgggcaggaagccgtctcca 535293 Score = 42.1 bits (21), Expect = 3.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 540 atggccgagctctttggcaaggccactggctgc 572 ||||| ||||||||||||||||| || |||||| Sbjct: 535392 atggcggagctctttggcaaggctaccggctgc 535424
>emb|BX815365.1|CNS0ACRU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1441 Score = 58.0 bits (29), Expect = 6e-05 Identities = 191/245 (77%) Strand = Plus / Plus Query: 363 gacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttacaac 422 |||||||| || || ||||| ||||| |||||||||||||||||||| || | ||||| Sbjct: 376 gacatgtgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaat 435 Query: 423 gggcaggaggccgtctccatcggcttcatcaagcagctcaaccaacccgactgtgttgtt 482 || || ||||| || || | ||||| ||||||| || | | | | |||| ||| ||| Sbjct: 436 ggccaagaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgtt 495 Query: 483 agcacgtatcgtgaccatgtccacgcactgtccaagggtgtcccagcccgtgaagtcatg 542 || || || |||||||||||||| || || ||| |||||| | || |||| || ||| Sbjct: 496 agtacctaccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatg 555 Query: 543 gccgagctctttggcaaggccactggctgctgccgtggacagggtggttccatgcacatg 602 ||||||||| ||||||| ||||| |||||| | || || ||||| |||||||||||| Sbjct: 556 agcgagctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatg 615 Query: 603 ttctc 607 ||||| Sbjct: 616 ttctc 620 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Plus Query: 657 cctgtcgccactggtgctgccttt 680 |||||||||||||||||||||||| Sbjct: 671 cctgtcgccactggtgctgccttt 694
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 360 gaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgtccatctttac 419 ||||||| |||||| ||||||||||||| ||||||||||| || || || || || ||| Sbjct: 851094 gaggacaagtgcgccgagatgtactaccggggcaagatgttcggcttcgtgcacctctac 851035 Query: 420 aacgggcagga 430 ||||| ||||| Sbjct: 851034 aacggtcagga 851024
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 393 aagatgtttggttttgtccatctttacaacgggca 427 ||||||||||| ||||| ||||||||||||||||| Sbjct: 808379 aagatgtttgggtttgttcatctttacaacgggca 808413
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 376 agatgtactaccgtggcaagatgtttggttttgtccatctttacaacgggcaggaggccg 435 ||||||| ||||| |||||||||||||| || || || ||||||||||| || || |||| Sbjct: 1469629 agatgtattaccggggcaagatgtttggcttcgttcacctttacaacggtcaagaagccg 1469688 Query: 436 tc 437 || Sbjct: 1469689 tc 1469690
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 52.0 bits (26), Expect = 0.004 Identities = 44/50 (88%) Strand = Plus / Minus Query: 390 ggcaagatgtttggttttgtccatctttacaacgggcaggaggccgtctc 439 ||||||||||| || ||||| ||||| |||||||| || ||||||||||| Sbjct: 311466 ggcaagatgttcggctttgtgcatctgtacaacggccaagaggccgtctc 311417
>gb|CP000393.1| Trichodesmium erythraeum IMS101, complete genome Length = 7750108 Score = 50.1 bits (25), Expect = 0.015 Identities = 37/41 (90%) Strand = Plus / Minus Query: 378 atgtactaccgtggcaagatgtttggttttgtccatcttta 418 ||||| ||||| ||||| |||||||| |||||||||||||| Sbjct: 7728071 atgtattaccgaggcaaaatgtttggctttgtccatcttta 7728031
>gb|DQ457185.1| Toxoplasma gondii apicoplast pyruvate dehydrogenase E1 alpha subunit (pdhA) mRNA, complete cds; nuclear gene for apicoplast product Length = 1908 Score = 50.1 bits (25), Expect = 0.015 Identities = 37/41 (90%) Strand = Plus / Plus Query: 537 gtcatggccgagctctttggcaaggccactggctgctgccg 577 |||||||||||||| |||||||| |||||||| ||| |||| Sbjct: 991 gtcatggccgagctgtttggcaaagccactgggtgcagccg 1031
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 50.1 bits (25), Expect = 0.015 Identities = 43/49 (87%) Strand = Plus / Plus Query: 376 agatgtactaccgtggcaagatgtttggttttgtccatctttacaacgg 424 ||||||||||| | || ||||||||||||||||| || ||||| ||||| Sbjct: 192344 agatgtactacagaggtaagatgtttggttttgtacacctttataacgg 192392
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 48.1 bits (24), Expect = 0.060 Identities = 48/56 (85%) Strand = Plus / Plus Query: 378 atgtactaccgtggcaagatgtttggttttgtccatctttacaacgggcaggaggc 433 ||||||||| | ||||| ||||||||||||||||| | |||||||| || ||||| Sbjct: 5362086 atgtactacaggggcaaaatgtttggttttgtccacttgtacaacggacaagaggc 5362141
>emb|BX818597.1|CNS0ACON Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZB08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1431 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Plus Query: 657 cctgtcgccactggtgctgccttt 680 |||||||||||||||||||||||| Sbjct: 649 cctgtcgccactggtgctgccttt 672
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 48.1 bits (24), Expect = 0.060 Identities = 39/44 (88%) Strand = Plus / Plus Query: 390 ggcaagatgtttggttttgtccatctttacaacgggcaggaggc 433 ||||| |||||||| ||||||||||| |||||||| || ||||| Sbjct: 1263731 ggcaaaatgtttgggtttgtccatctctacaacggtcaagaggc 1263774
>ref|XM_385630.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein (FG05454.1) partial mRNA Length = 1230 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Plus Query: 583 agggtggttccatgcacatgttc 605 ||||||||||||||||||||||| Sbjct: 497 agggtggttccatgcacatgttc 519
>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence Length = 170363 Score = 46.1 bits (23), Expect = 0.24 Identities = 26/27 (96%) Strand = Plus / Minus Query: 928 ttaaatacctcaccaagattttttttc 954 |||||||||||||||| |||||||||| Sbjct: 288 ttaaatacctcaccaaaattttttttc 262
>emb|AL157836.11| Human DNA sequence from clone RP11-477D14 on chromosome 10, complete sequence Length = 175382 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Minus Query: 744 gcattctcctctcttatgagcac 766 ||||||||||||||||||||||| Sbjct: 10524 gcattctcctctcttatgagcac 10502
>gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, complete sequence Length = 168285 Score = 46.1 bits (23), Expect = 0.24 Identities = 26/27 (96%) Strand = Plus / Plus Query: 928 ttaaatacctcaccaagattttttttc 954 |||||||||||||||| |||||||||| Sbjct: 87925 ttaaatacctcaccaaaattttttttc 87951
>gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6, complete sequence Length = 106514 Score = 46.1 bits (23), Expect = 0.24 Identities = 26/27 (96%) Strand = Plus / Minus Query: 928 ttaaatacctcaccaagattttttttc 954 |||||||||||||||| |||||||||| Sbjct: 15907 ttaaatacctcaccaaaattttttttc 15881
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 46.1 bits (23), Expect = 0.24 Identities = 32/35 (91%) Strand = Plus / Plus Query: 378 atgtactaccgtggcaagatgtttggttttgtcca 412 ||||||||| | ||||| ||||||||||||||||| Sbjct: 3303831 atgtactacagaggcaaaatgtttggttttgtcca 3303865
>ref|XM_952029.1| Neurospora crassa OR74A hypothetical protein (NCU06482.1) partial mRNA Length = 1254 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Plus Query: 583 agggtggttccatgcacatgttc 605 ||||||||||||||||||||||| Sbjct: 518 agggtggttccatgcacatgttc 540
>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome Length = 4744448 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 tcaccgtctcctccgacgtcctcaag 275 ||||||||||||||||||| |||||| Sbjct: 4740997 tcaccgtctcctccgacgtgctcaag 4740972
>emb|CT834132.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA223H14, full insert sequence Length = 2201 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Plus Query: 247 tcctcaccgtctcctccgacgtcctc 272 |||||||||||| ||||||||||||| Sbjct: 1563 tcctcaccgtctactccgacgtcctc 1588
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 caaggccgcgcccgccgccgcc 293 |||||||||||||||||||||| Sbjct: 4397902 caaggccgcgcccgccgccgcc 4397923
>ref|NM_001052442.1| Oryza sativa (japonica cultivar-group) Os02g0151300 (Os02g0151300) mRNA, complete cds Length = 2062 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Plus Query: 247 tcctcaccgtctcctccgacgtcctc 272 |||||||||||| ||||||||||||| Sbjct: 1440 tcctcaccgtctactccgacgtcctc 1465
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 caaggccgcgcccgccgccgcc 293 |||||||||||||||||||||| Sbjct: 1251110 caaggccgcgcccgccgccgcc 1251089
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 gctccgtcctcaccgtctcctc 262 |||||||||||||||||||||| Sbjct: 12548 gctccgtcctcaccgtctcctc 12569
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 44.1 bits (22), Expect = 0.93 Identities = 43/50 (86%) Strand = Plus / Plus Query: 360 gaggacatgtgcgcgcagatgtactaccgtggcaagatgtttggttttgt 409 ||||| |||||||| |||||||| || | ||||| |||||||||||||| Sbjct: 104200 gaggatatgtgcgctcagatgtattatagaggcaaaatgtttggttttgt 104249
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Minus Query: 247 tcctcaccgtctcctccgacgtcctc 272 |||||||||||| ||||||||||||| Sbjct: 2825108 tcctcaccgtctactccgacgtcctc 2825083
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Minus Query: 247 tcctcaccgtctcctccgacgtcctc 272 |||||||||||| ||||||||||||| Sbjct: 93336 tcctcaccgtctactccgacgtcctc 93311
>dbj|AP005209.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138E9, complete sequence Length = 161797 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 592 ccatgcacatgttctctgaacc 613 |||||||||||||||||||||| Sbjct: 62533 ccatgcacatgttctctgaacc 62554
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 537 gtcatggccgagctctttggcaaggccac 565 ||||||||||| ||||| ||||||||||| Sbjct: 2678430 gtcatggccgaactcttcggcaaggccac 2678402
>ref|XM_500110.1| Yarrowia lipolytica CLIB122, YALI0A15950g predicted mRNA Length = 2568 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 141 gtggcgccggtggcagccagatccgccgc 169 ||||||||||| ||||||||||| ||||| Sbjct: 470 gtggcgccggttgcagccagatcagccgc 442
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gcgccggtggcagccagatcc 164 ||||||||||||||||||||| Sbjct: 2087998 gcgccggtggcagccagatcc 2087978
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 caggaggccgtctccatcggc 446 ||||||||||||||||||||| Sbjct: 3489405 caggaggccgtctccatcggc 3489385
>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence Length = 129504 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 912 ttgcactgttaaggtgttaaa 932 ||||||||||||||||||||| Sbjct: 27360 ttgcactgttaaggtgttaaa 27340
>dbj|AK085833.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830015D12 product:unclassifiable, full insert sequence Length = 1927 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 833 tttgtgtgtgttaataacagc 853 ||||||||||||||||||||| Sbjct: 942 tttgtgtgtgttaataacagc 962
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cctccgccccggccgctcctc 48 ||||||||||||||||||||| Sbjct: 15112207 cctccgccccggccgctcctc 15112227
>emb|AL354699.11| Human DNA sequence from clone RP11-349E20 on chromosome 1, complete sequence Length = 81483 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 784 aaacccaagcttgcttaattt 804 ||||||||||||||||||||| Sbjct: 31945 aaacccaagcttgcttaattt 31965
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 583 agggtggttccatgcacatgt 603 ||||||||||||||||||||| Sbjct: 931156 agggtggttccatgcacatgt 931176
>emb|X95444.1|SLRHOGENE S.lividans Rho gene Length = 2986 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 caaggccgcgcccgccgccgc 292 ||||||||||||||||||||| Sbjct: 638 caaggccgcgcccgccgccgc 658
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cctcggctccgtcctcaccgt 256 ||||||||||||||||||||| Sbjct: 278472 cctcggctccgtcctcaccgt 278492
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 caaggccgcgcccgccgccgc 292 ||||||||||||||||||||| Sbjct: 145512 caaggccgcgcccgccgccgc 145532
>emb|AL591176.8| Zebrafish DNA sequence from clone BUSM1-160C18 in linkage group 8 Contains part of nine novel genes for proteins similar to MHC class II proteins, the putative novel transposon CR1DR1 and two CpG islands, complete sequence Length = 100379 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 767 ttttgtccggaacaaagaaac 787 ||||||||||||||||||||| Sbjct: 29480 ttttgtccggaacaaagaaac 29460
>gb|AC151269.3| Mus musculus BAC clone RP24-271C20 from chromosome 17, complete sequence Length = 127948 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 833 tttgtgtgtgttaataacagc 853 ||||||||||||||||||||| Sbjct: 88173 tttgtgtgtgttaataacagc 88193
>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome Length = 164921 Score = 42.1 bits (21), Expect = 3.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 378 atgtactaccgtggcaagatgtttggttttgtccatcttta 418 |||||||| ||||| || |||||||||||||| || ||||| Sbjct: 153031 atgtactatcgtggaaaaatgtttggttttgtacaccttta 152991
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 42.1 bits (21), Expect = 3.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 528 gcccgtgaagtcatggccgagctctttggcaaggccactggctgc 572 |||||||| || ||||| || |||||||||||||| || |||||| Sbjct: 1206742 gcccgtgaggtgatggctgaactctttggcaaggcgacaggctgc 1206786
>dbj|AP006631.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT12F12, TM0028b, complete sequence Length = 34228 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 421 acgggcaggaggccgtctccatcgg 445 ||||||||||||||||| ||||||| Sbjct: 14702 acgggcaggaggccgtcgccatcgg 14678
>emb|BX663607.13| Zebrafish DNA sequence from clone DKEY-30P18 in linkage group 6, complete sequence Length = 216068 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 912 ttgcactgttaaggtgttaaa 932 ||||||||||||||||||||| Sbjct: 196882 ttgcactgttaaggtgttaaa 196862
>ref|NM_211831.1| Eremothecium gossypii AGR103Wp (AGR103W), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 583 agggtggttccatgcacatgt 603 ||||||||||||||||||||| Sbjct: 470 agggtggttccatgcacatgt 490
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 ggccgcgcccgccgccgcctacccg 299 |||||||||||||||||||| |||| Sbjct: 2500986 ggccgcgcccgccgccgcctccccg 2501010
>gb|AF091095.1|AF091095 Homo sapiens NNX3 (C19orf2) mRNA, complete cds Length = 2204 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 aggccgcgcccgccgccgcct 294 ||||||||||||||||||||| Sbjct: 27 aggccgcgcccgccgccgcct 7
>emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153687 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 cctccgccccggccgctcctc 48 ||||||||||||||||||||| Sbjct: 143716 cctccgccccggccgctcctc 143696
>emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113071 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cctccgccccggccgctcctc 48 ||||||||||||||||||||| Sbjct: 51624 cctccgccccggccgctcctc 51644
>emb|CT030727.4| Mouse DNA sequence from clone RP23-273I12 on chromosome 17, complete sequence Length = 230658 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 833 tttgtgtgtgttaataacagc 853 ||||||||||||||||||||| Sbjct: 151664 tttgtgtgtgttaataacagc 151644
>gb|AC131750.3| Mus musculus BAC clone RP23-34F5 from 1, complete sequence Length = 190325 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 653 catccctgtcgccactggtgctgcc 677 |||||||||| |||||||||||||| Sbjct: 114908 catccctgtctccactggtgctgcc 114932
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 141 gtggcgccggtggcagccagatccgccgc 169 ||||||||||| ||||||||||| ||||| Sbjct: 1626588 gtggcgccggttgcagccagatcagccgc 1626560 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 174,265,478 Number of extensions: 10373829 Number of successful extensions: 275366 Number of sequences better than 10.0: 78 Number of HSP's gapped: 275366 Number of HSP's successfully gapped: 102 Length of query: 977 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 954 Effective length of database: 18,503,978,556 Effective search space: 17652795542424 Effective search space used: 17652795542424 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
