ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf13k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK120407:Os03g0699300 827 0.0
2AK066881:Os03g0174500 731 0.0
3AK107684: 488 e-138
4AK060483:Os07g0497000 31 2.1
5AK110255: 31 2.1
6AK120018:Os05g0372300 31 2.1
7AK064720:Os04g0386300 31 2.1
8Os04g0588200:Os04g0588200 31 2.8
9Os02g0612000:Os02g0612000 31 2.8
10AK111048:Os03g0438900 31 2.8
11Os05g0545900:Os05g0545900 31 2.8
12AK098860:Os01g0242600 30 3.6
13AK067756:Os01g0242600 30 3.6
14AK105412:Os01g0661000 30 4.7
15AK101958:Os01g0661000 30 4.7
16AK101251:Os07g0675100 30 4.7
17Os02g0663300:Os02g0663300 30 4.7
18Os06g0587500:Os06g0587500 30 6.2
19AY224480:Os12g0210800 30 6.2
20AK109007:Os03g0841600 30 6.2
21AK072548:Os12g0210800 30 6.2
22AK110283: 29 8.1
23AK102832:Os01g0750600 29 8.1
24AK064397:Os01g0750600 29 8.1

>AK120407:Os03g0699300 |
          Length = 489
 Score =  827 bits (2137), Expect = 0.0
 Identities = 401/431 (93%), Positives = 420/431 (97%)
 Frame = +2

Query: 200  GRLECLSQVAGVLGTQWGDEGKGKLVDILAQRFDVVARCQGGANAGHTIYNSEGKKFSLH 379
            GRLE LSQVAGVLGTQWGDEGKGKLVDILAQRFD+VARCQGGANAGHTIYNSEGKKFSLH
Sbjct: 59   GRLESLSQVAGVLGTQWGDEGKGKLVDILAQRFDIVARCQGGANAGHTIYNSEGKKFSLH 118

Query: 380  LVPSGILNENTQCVIGNGAVVHLPGFFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQVV 559
            LVPSGILNE T CV+GNGAVVHLPGFFKEIDGLESNG+SC+GRILVSDRAHLLFDFHQ V
Sbjct: 119  LVPSGILNEKTMCVVGNGAVVHLPGFFKEIDGLESNGISCEGRILVSDRAHLLFDFHQTV 178

Query: 560  DGLREVELGNSFIGTTKRGIGPCYSNKVIRNGLRVSDLRHMDTFGAKLNTLLKDAAMRFK 739
            DGLREVELGNS IGTTKRGIGPCYSNKVIRNGLRVSDLRHMDTFGAKLNTLL+DAA+RF+
Sbjct: 179  DGLREVELGNSLIGTTKRGIGPCYSNKVIRNGLRVSDLRHMDTFGAKLNTLLRDAALRFE 238

Query: 740  GFEYSSKTLKEEVEKYEKFAERLGPYITDTVHFMNESILQKKKILVEGGQATMLDIDFGT 919
            GFEYS+KTLKEEVEKYEKFAERLGPYITDTVHFMN+SILQ KKILVEGGQATMLDIDFGT
Sbjct: 239  GFEYSTKTLKEEVEKYEKFAERLGPYITDTVHFMNQSILQNKKILVEGGQATMLDIDFGT 298

Query: 920  YPFVTSSSPSAGGICTGLGIAPRTLGDIIGVVKAYTTRVGSGPFPTELLGKTGDLLRASG 1099
            YPFVTSSSPSAGGICTGLGIAPR++GD+IGVVKAYTTRVGSGPFPTELLGKTGDLLRASG
Sbjct: 299  YPFVTSSSPSAGGICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGDLLRASG 358

Query: 1100 MEFGTTTGRPRRCGWLDIVALRYCCQINGFSSLNLTKLDVLTGLKEIKLGTSYCTEDGKA 1279
            MEFGTTTGRPRRCGWLDIVAL+YCCQINGFSSLNLTKLDVLTGLKE+KLG +YCTEDGK 
Sbjct: 359  MEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLTGLKEVKLGIAYCTEDGKE 418

Query: 1280 IESFPADLDILEQTKVKYEALPGWEEDISSVRDYDDLPETARLYVERIEELVGIPVHYIG 1459
            IESFPADLD+LE+ KVKYE LPGWE+DISSVR+Y DLPETARLYVERIEELVGIPVHYIG
Sbjct: 419  IESFPADLDLLEKIKVKYEVLPGWEDDISSVRNYSDLPETARLYVERIEELVGIPVHYIG 478

Query: 1460 VGPGRDALIYK 1492
            VGPGRDALIYK
Sbjct: 479  VGPGRDALIYK 489



to top

>AK066881:Os03g0174500 |
          Length = 488

 Score =  731 bits (1887), Expect = 0.0
 Identities = 350/430 (81%), Positives = 385/430 (89%)
 Frame = +2

Query: 203  RLECLSQVAGVLGTQWGDEGKGKLVDILAQRFDVVARCQGGANAGHTIYNSEGKKFSLHL 382
            R+  LSQV+GVLG+QWGDEGKGKLVD+LA RFD+VARCQGGANAGHTIYNSEGKKF+LHL
Sbjct: 59   RVSALSQVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHL 118

Query: 383  VPSGILNENTQCVIGNGAVVHLPGFFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQVVD 562
            VPSGIL+E T CV+GNGAV+H+PGFF EIDGLESNGV+C GRILVSDRAHLLFD HQ VD
Sbjct: 119  VPSGILHEGTLCVVGNGAVIHVPGFFNEIDGLESNGVNCNGRILVSDRAHLLFDLHQAVD 178

Query: 563  GLREVELGNSFIGTTKRGIGPCYSNKVIRNGLRVSDLRHMDTFGAKLNTLLKDAAMRFKG 742
            GLRE EL NSFIGTTKRGIGPCYS+KV RNGLRV DLRHMDTFG KL+ L KDA  RF+G
Sbjct: 179  GLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFKDATSRFEG 238

Query: 743  FEYSSKTLKEEVEKYEKFAERLGPYITDTVHFMNESILQKKKILVEGGQATMLDIDFGTY 922
            FEYS   L+EEVE+Y++FAERL P+I DTVH +NESI QKKKILVEGGQATMLDIDFGTY
Sbjct: 239  FEYSKSMLREEVERYKRFAERLEPFIADTVHLLNESIQQKKKILVEGGQATMLDIDFGTY 298

Query: 923  PFVTSSSPSAGGICTGLGIAPRTLGDIIGVVKAYTTRVGSGPFPTELLGKTGDLLRASGM 1102
            PFVTSSSPSAGGICTGLGIAPR +GD+IGVVKAYTTRVGSGPFPTEL G+ GDLLR SGM
Sbjct: 299  PFVTSSSPSAGGICTGLGIAPRCIGDLIGVVKAYTTRVGSGPFPTELFGEEGDLLRKSGM 358

Query: 1103 EFGTTTGRPRRCGWLDIVALRYCCQINGFSSLNLTKLDVLTGLKEIKLGTSYCTEDGKAI 1282
            EFGTTTGRPRRCGWLDIVAL+YCC+INGFSSLNLTKLDVL+GL E+KLG SY   DG+ +
Sbjct: 359  EFGTTTGRPRRCGWLDIVALKYCCEINGFSSLNLTKLDVLSGLPEVKLGVSYNQPDGQKL 418

Query: 1283 ESFPADLDILEQTKVKYEALPGWEEDISSVRDYDDLPETARLYVERIEELVGIPVHYIGV 1462
            +SFP DLD LEQ +VKYE LPGW+ DISSVR Y +LP  A+ YVERIEELVG+PVHYIGV
Sbjct: 419  QSFPGDLDTLEQVQVKYEVLPGWQSDISSVRSYSELPLAAQRYVERIEELVGVPVHYIGV 478

Query: 1463 GPGRDALIYK 1492
            GPGRDALIYK
Sbjct: 479  GPGRDALIYK 488



to top

>AK107684: |
          Length = 438

 Score =  488 bits (1255), Expect = e-138
 Identities = 233/423 (55%), Positives = 309/423 (73%), Gaps = 3/423 (0%)
 Frame = +2

Query: 233  VLGTQWGDEGKGKLVDILAQRFDVVARCQGGANAGHTIY---NSEGKKFSLHLVPSGILN 403
            +LG+QWGDEGKGKL D+L+ + DV ARC GG NAGHTI    N    KF  HL+PSG++N
Sbjct: 19   LLGSQWGDEGKGKLADVLSGQMDVCARCAGGNNAGHTIVADVNGVKTKFDFHLLPSGLVN 78

Query: 404  ENTQCVIGNGAVVHLPGFFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQVVDGLREVEL 583
                  IG+G VVH+P FF E+D ++  G++C GR+ +SDRAHL+FDFHQVVDGL+EVEL
Sbjct: 79   PRCAGFIGSGVVVHVPSFFAELDNIQKKGLNCDGRLFISDRAHLVFDFHQVVDGLKEVEL 138

Query: 584  GNSFIGTTKRGIGPCYSNKVIRNGLRVSDLRHMDTFGAKLNTLLKDAAMRFKGFEYSSKT 763
            G S IGTTK+GIGP YS+K  R+GLRV  L   + F +K   L++    R+  FEY ++ 
Sbjct: 139  GGSSIGTTKKGIGPAYSSKASRSGLRVHHLYDQELFASKFRKLVEGRFKRYGHFEYDTEG 198

Query: 764  LKEEVEKYEKFAERLGPYITDTVHFMNESILQKKKILVEGGQATMLDIDFGTYPFVTSSS 943
               E+ +Y  FAERL P+I D V F++ ++ Q +K+LVEG  A  LDIDFGTYPFVTSSS
Sbjct: 199  ---EIARYRAFAERLRPHIVDGVSFIHTALAQNRKVLVEGANALFLDIDFGTYPFVTSSS 255

Query: 944  PSAGGICTGLGIAPRTLGDIIGVVKAYTTRVGSGPFPTELLGKTGDLLRASGMEFGTTTG 1123
             S GG+ TGLGI P  +G++IGV+KAYTTRVG GPFPTEL  + G  L+  G E+GTTTG
Sbjct: 256  TSIGGVLTGLGIPPTAIGNVIGVMKAYTTRVGMGPFPTELHEEIGHHLQEVGAEYGTTTG 315

Query: 1124 RPRRCGWLDIVALRYCCQINGFSSLNLTKLDVLTGLKEIKLGTSYCTEDGKAIESFPADL 1303
            R RRCGWLD++ +RY C ING++SLNLTKLDVL  LKE+K    Y   DGK + SFPADL
Sbjct: 316  RRRRCGWLDLIMMRYSCLINGYTSLNLTKLDVLDQLKELKAAVGYVV-DGKELPSFPADL 374

Query: 1304 DILEQTKVKYEALPGWEEDISSVRDYDDLPETARLYVERIEELVGIPVHYIGVGPGRDAL 1483
            ++L + +V+Y+ LPGW++DIS  + +++LPE  R YVE +E+ +G+ + +IGVGP R+++
Sbjct: 375  EVLAKVEVQYKTLPGWQQDISKAQTWEELPENCRAYVEFLEQFLGVKIEWIGVGPARESM 434

Query: 1484 IYK 1492
            I++
Sbjct: 435  IHR 437



to top

>AK060483:Os07g0497000 |
          Length = 350

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = -2

Query: 1430 TLLSSPRTDERSPGDRRSPAPRKCPPPTQAAPRI*PSFAPRCRGLPGTIRSLCHLRC 1260
            T LS P  +  + GD  S  P K P   Q A R  PS  P C  LP T+ ++    C
Sbjct: 37   TKLSDPLAE--NSGDFESSKPNKLPHWLQEAVRAPPSKPPECE-LPATVSAIAQSVC 90



to top

>AK110255: |
          Length = 697

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +1

Query: 1264 RRWQSDRIVPGR------PRHLGANEGQIRGAAWVGGGHFLGAGLRRSP 1392
            R+W +  + P        P  L A  G + GAAWV G   +GA   R P
Sbjct: 422  RQWSTPFLAPNAGITAMPPTSLSARPGGLPGAAWVAGPPSVGAASTRHP 470



to top

>AK120018:Os05g0372300 |
          Length = 519

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 1021 LHNQGWIWPIPNGAVGQDRRFAPCIWNGVWDHNRSAQALWLARYSRAQILLPNQWLLIPK 1200
            L+ + W  P+P G      R  P +WN V DH +    +W     R         ++IP 
Sbjct: 68   LNREAWSRPLPLGCHRIAPRVLPLLWNAVRDHGK-LSFIWFGPVPR---------VMIPD 117

Query: 1201 PDKTR 1215
            P+  R
Sbjct: 118  PELVR 122



to top

>AK064720:Os04g0386300 |
          Length = 169

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1195 PKPDKTRRADRAEGDQAGHFILHRRWQSDRIVPGRPRHLGANEGQIRGAA---WVGGGHF 1365
            P P +  RA  A G +AG               G P   G     +RGA      GG   
Sbjct: 41   PPPPRRHRAAAAGGGRAG----------GEAADGGPDEAGVGAPGVRGAGEGDGAGGAGA 90

Query: 1366 LGAGLRRSPGD 1398
             GAG+R  PGD
Sbjct: 91   RGAGVRARPGD 101



to top

>Os04g0588200:Os04g0588200 |
          Length = 1323

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 1421 SSPRTDERSPGDRRSPAPRKCPPPTQAAP 1335
            +SPR   R+P  RR  APR  P PT   P
Sbjct: 143  ASPRPPPRTPSARRPTAPRSLPLPTYLPP 171



to top

>Os02g0612000:Os02g0612000 |
          Length = 332

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 644 IRNGLRVSDLRHMDTFGAKLNTLLKDAAMRFKGFEYSSKTLKEEVEKYEKFAERL 808
           I N L V D+   +T G   + +L +A MR +  EY    + +E  K  K  ERL
Sbjct: 233 ILNSLGVEDV---ETVGKPFDPMLHEAIMREESVEYEEGVILQEFRKGFKLGERL 284



to top

>AK111048:Os03g0438900 |
          Length = 146

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 1385 RRSPAPRKCPPPTQAAPRI*PSFAPRCRGLPGTIRSLCHLR 1263
            RR P+  + PP    A  + PS APRC    GT RS C  R
Sbjct: 65   RRRPSTHELPPSPLRAHPVPPSPAPRC----GTRRSRCRWR 101



to top

>Os05g0545900:Os05g0545900 |
          Length = 339

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 375 SENFFPSELYMVCPALAPPWQRATTSKRWARMSTSLPFPSSPHCVPSTPATW 220
           S  F P+     C A   P ++  T  RW R+  +LP P    C+   P TW
Sbjct: 50  SSTFLPAAAGSACEA---PARKKRTPGRWRRIPRTLPHP----CLRKRPMTW 94



to top

>AK098860:Os01g0242600 |
          Length = 714

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1

Query: 1240 QAGHFILHRRWQSDRIVPGRPRHLGANEGQIRGAAWVGGGHFLGAG 1377
            +A HF L  R + DR + GRP   GA   + RG A VG G  + AG
Sbjct: 2    RARHFRLALRGKRDRRLAGRP---GARGFRFRGGAAVGWGGEMDAG 44



to top

>AK067756:Os01g0242600 |
          Length = 736

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1

Query: 1240 QAGHFILHRRWQSDRIVPGRPRHLGANEGQIRGAAWVGGGHFLGAG 1377
            +A HF L  R + DR + GRP   GA   + RG A VG G  + AG
Sbjct: 24   RARHFRLALRGKRDRRLAGRP---GARGFRFRGGAAVGWGGEMDAG 66



to top

>AK105412:Os01g0661000 |
          Length = 405

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 1394 PGDRRSPAPRKCPPPT----QAAPRI*PSFAPRCRGLPGTIRSL 1275
            P D R+P PR  PPP     Q AP   P   P     PG+  S+
Sbjct: 91   PHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESM 134



to top

>AK101958:Os01g0661000 |
          Length = 405

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 1394 PGDRRSPAPRKCPPPT----QAAPRI*PSFAPRCRGLPGTIRSL 1275
            P D R+P PR  PPP     Q AP   P   P     PG+  S+
Sbjct: 91   PHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESM 134



to top

>AK101251:Os07g0675100 |
          Length = 579

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 1055 TELLGKTGDLLRASGMEFGTTTGRPRRCGWLDIVALRYCCQINGFSSLNLTKLDVL-TGL 1231
            +E++G+    +RAS     +   RPR+    D +AL  C ++ G +      LD+L T  
Sbjct: 101  SEVVGRAASAVRASSSNCTSYLQRPRQLRTRDRLALSDCLELFGHT------LDLLGTAA 154

Query: 1232 KEIKLGTSYCTEDGKAIES 1288
             E+  G S   E    +++
Sbjct: 155  AELSAGNSTAEESAAGVQT 173



to top

>Os02g0663300:Os02g0663300 |
          Length = 2825

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -1

Query: 393  PDGTRCSENFFPSELYMVCPALAP------PWQRATTSKRW-ARMSTSLPFPSSPHCVPS 235
            PDG R  E  F     + C AL+P         R TT   W  R   SL   S+P   PS
Sbjct: 2552 PDGARTIETAFGHLAPVTCVALSPDSNYLVTGSRDTTVILWRIRQIGSLRKKSTPEPPPS 2611

Query: 234  TPAT 223
            TP T
Sbjct: 2612 TPTT 2615



to top

>Os06g0587500:Os06g0587500 |
          Length = 1346

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 1379 SPAPRKCPPPTQAAPRI*PSFAPRCRGLPGTIRSLCHLR 1263
            S APR C P   A+ R  PS    C  L  +I  L H R
Sbjct: 1179 SAAPRACSPAVAASSRARPSLPAACFALQRSIYLLVHRR 1217



to top

>AY224480:Os12g0210800 |
          Length = 291

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 308 ARCQGGANAGHTIYNSEGKKFSLHLVPSGILNENTQCVIGNGAVVHLPGFFKEI 469
           A C   A+  H +    GKK     V SG L E   C+      V + G F E+
Sbjct: 189 ANCPVVADVTHALQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIFMEV 242



to top

>AK109007:Os03g0841600 |
          Length = 389

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -2

Query: 1436 QPTLLSSPRTDERSPGDRRSPA---PRKCPPPTQAAPRI*PSFAPRCRGLP 1293
            QP     P      PG RR+P    PR+ PP    AP + P  A R R  P
Sbjct: 66   QPVHHVPPPAGAAQPGRRRAPGQARPRRAPPGQPRAPGVPPLAARRRRRPP 116



to top

>AK072548:Os12g0210800 |
          Length = 317

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 308 ARCQGGANAGHTIYNSEGKKFSLHLVPSGILNENTQCVIGNGAVVHLPGFFKEI 469
           A C   A+  H +    GKK     V SG L E   C+      V + G F E+
Sbjct: 215 ANCPVVADVTHALQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIFMEV 268



to top

>AK110283: |
          Length = 501

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -1

Query: 1116 VVPNSIPDARSKSPVLP-NSSVGNGPDPTLVV*AFTTPMISPRVLGAMPRPVQIPPAEGL 940
            V PN    A   SP+ P  ++    P PT    A  T  + P      P P  +PPA  +
Sbjct: 335  VPPNKPIPAPPSSPLPPIPTTPAPTPTPTATPTATPTTTVPPAPTVVPPAPTVVPPAPSV 394

Query: 939  EEVTNGYVPKSMSNMVA*PP 880
                   VP + +  V  PP
Sbjct: 395  VPPAPTMVPPAPTAKVPPPP 414



to top

>AK102832:Os01g0750600 |
          Length = 682

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
 Frame = -1

Query: 1122 PVVVPNSIPDARSKSPVLPNSSVGNGPDPTLVV*AFTTPMISPRVLGAMPRPVQIPPAEG 943
            PV  P   P      P +P S     P PT V     TP   P V  + P PV  PP   
Sbjct: 67   PVTPPPVTPPTPVAPPPVPPSPPPPTPTPTPV-----TPSPPPPVTPSPPPPVASPPPPD 121

Query: 942  LEEV-----TNGYVPKSMSNMVA*PPSTNI 868
            +             P S SN+ A PP   I
Sbjct: 122  VPTAPPPSNNPPSPPPSPSNVPASPPPPRI 151



to top

>AK064397:Os01g0750600 |
          Length = 682

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
 Frame = -1

Query: 1122 PVVVPNSIPDARSKSPVLPNSSVGNGPDPTLVV*AFTTPMISPRVLGAMPRPVQIPPAEG 943
            PV  P   P      P +P S     P PT V     TP   P V  + P PV  PP   
Sbjct: 67   PVTPPPVTPPTPVAPPPVPPSPPPPTPTPTPV-----TPSPPPPVTPSPPPPVASPPPPD 121

Query: 942  LEEV-----TNGYVPKSMSNMVA*PPSTNI 868
            +             P S SN+ A PP   I
Sbjct: 122  VPTAPPPSNNPPSPPPSPSNVPASPPPPRI 151


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 46,498,390
Number of extensions: 1246021
Number of successful extensions: 5210
Number of sequences better than 10.0: 24
Number of HSP's gapped: 5168
Number of HSP's successfully gapped: 24
Length of query: 522
Length of database: 15,399,855
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,195,550
Effective search space: 4668544350
Effective search space used: 4668544350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top