>O60641:AP180_HUMAN Clathrin coat assembly protein AP180 - Homo sapiens (Human)|
          Length = 907
 Score = 38.5 bits (88), Expect = 0.15
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 678 EPRNPTT----ATRPSRHSTTALIQACPAARRLRANSDALPPQVAPAASKGTAWPWAPSP 511
           EP  PTT    AT  +  STT  + A  A   L  ++ A  P  APAAS+G A P  P+P
Sbjct: 407 EPTPPTTTAEIATASASASTTTTVTAVTAEVDLFGDAFAASPGEAPAASEGAAAPATPTP 466

Query: 510 SSRA 499
            + A
Sbjct: 467 VAAA 470

>Q61548:AP180_MOUSE Clathrin coat assembly protein AP180 - Mus musculus (Mouse)|
          Length = 901

 Score = 38.1 bits (87), Expect = 0.20
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 678 EPRNPTTATRPSRHS--TTALIQACPAARRLRANSDALPPQVAPAASKGTAWPWAPSPSS 505
           EP  PTT T P+  S  TT  + A      L  ++ A  P  APAAS+G   P  P+P +
Sbjct: 405 EPSPPTTTTEPASASASTTTAVTAVTTEVDLFGDAFAASPGEAPAASEGATAPATPAPVA 464

Query: 504 RA 499
            A
Sbjct: 465 AA 466

>Q05140:AP180_RAT Clathrin coat assembly protein AP180 - Rattus norvegicus (Rat)|
          Length = 915

 Score = 37.4 bits (85), Expect = 0.34
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 678 EPRNPTTATRPSRHSTTALIQACPAARRLRANSDALP--PQVAPAASKGTAWPWAPSPSS 505
           EP  PTT T P+  S +A      A   +    DA    P  APAAS+G   P  P+P +
Sbjct: 405 EPSPPTTTTEPASASASATTAVTAATTEVDLFGDAFAASPGEAPAASEGATAPATPAPVA 464

Query: 504 RA 499
            A
Sbjct: 465 AA 466

>Q29435:MUC1_HYLLA Mucin-1 precursor - Hylobates lar (Common gibbon)|
          Length = 475

 Score = 36.2 bits (82), Expect = 0.75
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 5   RPTLPAESRPVDRSIETTTSLSGRAPT--HRHTQSARRLPPSSKQEPRRRPGHHHD 166
           RPTL + + PV      + S SG A T  H  T +     P+SK  P   P HH D
Sbjct: 165 RPTLGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSD 220

>O92531:POLG_HCVVO Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 6k (isolate VN405) (HCV)
          Length = 3016

 Score = 34.3 bits (77), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 1708 FSFQCIHAVCPVNFTCHNVNFRTGRISHCFEEHCSFAR 1595
            + ++  H  C VN+T H V    G I H FE  C++ R
Sbjct: 613  YPYRLWHYPCTVNYTIHKVRMFVGGIEHRFEAACNWTR 650

>Q5I2N3:POLG_HCV6A Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 6a (isolate 6a33) (HCV)
          Length = 3019

 Score = 34.3 bits (77), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 1708 FSFQCIHAVCPVNFTCHNVNFRTGRISHCFEEHCSFAR 1595
            + ++  H  C VNFT H V    G I H F+  C++ R
Sbjct: 616  YPYRLWHYPCTVNFTVHKVRMFVGGIEHRFDAACNWTR 653

>P15941:MUC1_HUMAN Mucin-1 precursor - Homo sapiens (Human)|
          Length = 1255

 Score = 34.3 bits (77), Expect = 2.9
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 5    RPTLPAESRPVDRSIETTTSLSGRAPT--HRHTQSARRLPPSSKQEPRRRPGHHHD 166
            RP L + + PV      + S SG A T  H  T +     P+SK  P   P HH D
Sbjct: 945  RPALGSTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSD 1000

>Q9M0E6:FBK90_ARATH F-box/Kelch-repeat protein At4g29370 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 378

 Score = 34.3 bits (77), Expect = 2.9
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
 Frame = +2

Query: 1595 PREAAVFLKAMGYPSSTKIYIVAGEIY---GAHSMDALKAEYPNIYTHYSLATVDELEPL 1765
            P  A   +K M   +  KI +V G+IY   GA  MD +   Y      +S A  DE   L
Sbjct: 200  PLPANPDVKVMTEDNVRKIDVVGGKIYVKTGAEFMDWI---YDVKRGKWSAA--DEYMSL 254

Query: 1766 ELYQNRLAAVDYIVALQSDVFVYTYD--GNMARAVQGHRRFEGFRKTINPDRLKFVELID 1939
             L+ N    ++ ++   S      YD    M R V+G +  + +    N +R + VEL++
Sbjct: 255  -LWSNSWCVIENVMYCYSCSRYRWYDLEARMWREVKGLKYLKRYSSASNDNRNRMVELVN 313

Query: 1940 KLDEGSMTWDEFQSEVRKHHED 2005
               + ++ WD F+   R  +++
Sbjct: 314  FGGKLAILWDRFERPGRSENKN 335

>A0AUT1:TCHP_XENLA Trichoplein keratin filament-binding protein - Xenopus laevis|
            (African clawed frog)
          Length = 499

 Score = 33.9 bits (76), Expect = 3.7
 Identities = 25/108 (23%), Positives = 51/108 (47%)
 Frame = +2

Query: 1298 LAPSLQRLRCRANYKALQYRKEIEELGNNLVERLKRGSDHYIALHLRYEKDMLAFTGCNH 1477
            L   L+ LRC   +     R+  EEL +   ER K+ ++    L+ +++K+ +       
Sbjct: 99   LEEELKELRCNKEHNVSDMRQRTEELKSAREERQKQLAEE--LLYEQWKKNNVKLREVES 156

Query: 1478 NLTLHEADELTDMRLKVRHWKEKEINSEEKRLQGGCPMTPREAAVFLK 1621
            +L      +    ++  R+ +++E + E+KRL+    +  REA   +K
Sbjct: 157  SLFKKHVVDAWGEQITARNQEKEEEDMEKKRLENEYELARREAIERMK 204

>Q7ZX42:CDK9B_XENLA Cell division protein kinase 9-B - Xenopus laevis (African clawed|
            frog)
          Length = 376

 Score = 33.9 bits (76), Expect = 3.7
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
 Frame = +2

Query: 782  VMGWTEENLTALTRRPPDPPIPEIWTKPDSGGYSQCIERPKNQRRTDNATVGYLIVDANG 961
            + G TE++   L  +      PE+W   D     Q +E PK Q+R     +   + D   
Sbjct: 233  MQGNTEQHQLTLISQLCGSITPEVWPNVDKYELYQKLELPKGQKRKVKERLKAYVKDV-- 290

Query: 962  GLNQMRMGISDMVAVAKIMNATLVIPTLDHQSFWTD--PSDFKGI 1090
                  + + D + +      T     L+H  FW+D  PSD K +
Sbjct: 291  ----CALDLIDKLLILDPAQRTDSDEALNHDFFWSDPMPSDLKNM 331

>P11638:QA1F_NEUCR Quinic acid utilization activator - Neurospora crassa|
          Length = 816

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -3

Query: 666 PTTAT---RPSRHSTTALIQACPAARRLRANSDALPPQVAPAASKGTAWPWAPSPSSR 502
           PTT T    P+R     + +AC   R  R   D + P   P  S+G +  +  SP  R
Sbjct: 55  PTTTTLLVEPARSKRQRVSRACDQCRAAREKCDGIQPACFPCVSQGRSCTYQASPKKR 112

>Q9QAX1:POLG_HCVVA Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 2k (isolate VAT96) (HCV)
          Length = 3033

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 1708 FSFQCIHAVCPVNFTCHNVNFRTGRISHCFEEHCSFAR 1595
            + ++  H  C +NFT H +    G + H  E  C+F R
Sbjct: 615  YPYRLWHYPCTINFTIHKIRMFIGGVEHRLEAACNFTR 652

>P24658:L_CDVO Large structural protein - Canine distemper virus (strain|
            Onderstepoort) (CDV)
          Length = 2184

 Score = 33.1 bits (74), Expect = 6.4
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
 Frame = +2

Query: 1268 HTDSRIVNNGLAPSLQRLRCRANYKALQYRKEIEELGNNLVERLKRGSDHYIALH----- 1432
            H DS IV N L   L+  R R NY+ L        L  N+ ER+  G  + + ++     
Sbjct: 15   HLDSPIVTNKLVSILEYARIRHNYQLLD-----TTLVRNIKERISEGFSNQMIINCIEIG 69

Query: 1433 -------LRYEK-DMLAFTGCNHNLTLHEADELTDMRLK 1525
                   L Y K + + +  CN  L  H  D +  +RL+
Sbjct: 70   SIINQTLLSYPKHNHVIYPNCN-KLLFHAQDRVISLRLR 107

>Q8WXH0:SYNE2_HUMAN Nesprin-2 - Homo sapiens (Human)|
          Length = 6885

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
 Frame = +2

Query: 1331 ANYKAL-QYRKEIEELGNNLVERLKRGSDHYIALHLRYEKDMLAFTGCNHNLTLH----- 1492
            +N K+L +Y K +EEL NN+ E +K      ++L  +       +   +H L+L+     
Sbjct: 888  SNTKSLAKYLKAVEELKNNVTEDIK------MSLEEKSRDVCAKWESLHHELSLYVQQLK 941

Query: 1493 ---EADELTDMRLKVRHWKEKEINSEEKRLQGG 1582
               E  +L+D  LK+    EK+IN E+K ++ G
Sbjct: 942  IDIEKGKLSDNILKL----EKQINKEKKLIRRG 970

>O92532:POLG_HCVVP Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 6h (isolate VN004) (HCV)
          Length = 3015

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 1708 FSFQCIHAVCPVNFTCHNVNFRTGRISHCFEEHCSFAR 1595
            + ++  H  C VNFT H V    G + H F   C++ R
Sbjct: 612  YPYRLWHYPCTVNFTIHKVRVFVGGVEHRFNAACNWTR 649

>O39927:POLG_HCVEU Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus|
            genotype 6a (isolate EUHK2) (HCV)
          Length = 3018

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 1708 FSFQCIHAVCPVNFTCHNVNFRTGRISHCFEEHCSFAR 1595
            ++++  H  C VNFT H V    G   H F+  C++ R
Sbjct: 615  YAYRLWHYPCTVNFTLHKVRMFVGGTEHRFDVACNWTR 652

>Q50DM6:GPR56_GORGO G-protein coupled receptor 56 precursor - Gorilla gorilla gorilla|
            (Lowland gorilla)
          Length = 687

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
 Frame = -3

Query: 2190 VTPAAKLAAVRLKTEPFPSETNLFHFTL*TFWHRHPG----------IGFE*KYSS--CL 2047
            +T  A   A R  ++ FP    L+HF L  +W+RH G               K SS  C 
Sbjct: 65   LTVHAPFPAARPASQSFPDPRGLYHFCL--YWNRHAGRLHLLYGKHDFLLSDKASSLLCF 122

Query: 2046 GLSPGNLLYGPPSLSS*CFLTSLWNSSQVIEP 1951
                 +L  GPP L++   +TS W+   V  P
Sbjct: 123  QHQEESLAQGPPLLAT--SVTSWWSPQNVSLP 152


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 424,353,579
Number of extensions: 9095870
Number of successful extensions: 26088
Number of sequences better than 10.0: 17
Number of HSP's gapped: 26035
Number of HSP's successfully gapped: 17
Length of query: 915
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 793
Effective length of database: 67,222,449
Effective search space: 53307402057
Effective search space used: 53307402057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)