ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf7c11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT831691.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI030G18, full insert sequence Length = 934 Score = 317 bits (160), Expect = 4e-83 Identities = 358/424 (84%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 116 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 175 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 176 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 235 Query: 274 cccgcgccaaggccgaccggctcgccgccgacgtcctctccttcttcaccggctccaaag 333 |||||||||||||||||| |||||||| | ||||||| | ||| || |||||| | Sbjct: 236 cccgcgccaaggccgaccagctcgccgaatccatcctctcgtggttcgccaactccaagg 295 Query: 334 gtccatattattatgatgacttggaggagatgatgtttgacagcatatccgaattcttca 393 || | |||||||||| || |||| ||| ||||||| ||||| | ||||||| ||||| Sbjct: 296 gtaaacattattatgaagatttggtggatatgatgtatgacacagtgtccgaatccttca 355 Query: 394 atgctgactttgaggatggaagtgttggggaggttgctgaacaagtattgattatgcatg 453 |||| |||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||| Sbjct: 356 atgcggactttgaggatggtagtgttgaagaggtcgctgaacaattgttgattatgcatg 415 Query: 454 aagaatgcctgcaaaacaactattcgtcgattgacaagctaaggaacacacgcactcaag 513 ||||||||||||||| ||||||||| || |||| ||||| |||||| |||| |||||| Sbjct: 416 aagaatgcctgcaaagcaactattcttcagttgagaagcttaggaactcacgtgctcaag 475 Query: 514 gagctgctgtttcccaaagtagaatgatggtaactgatgacgacgatgatagctcagatg 573 | |||||||||||| ||||||| |||||| ||||| |||||||||||||| |||| Sbjct: 476 ggaatgctgtttcccagagtagaaagatggtggttgatggagacgatgatagctcggatg 535 Query: 574 acga 577 |||| Sbjct: 536 acga 539
>ref|NM_001068732.1| Oryza sativa (japonica cultivar-group) Os08g0508600 (Os08g0508600) mRNA, complete cds Length = 849 Score = 317 bits (160), Expect = 4e-83 Identities = 358/424 (84%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 99 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 158 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 159 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 218 Query: 274 cccgcgccaaggccgaccggctcgccgccgacgtcctctccttcttcaccggctccaaag 333 |||||||||||||||||| |||||||| | ||||||| | ||| || |||||| | Sbjct: 219 cccgcgccaaggccgaccagctcgccgaatccatcctctcgtggttcgccaactccaagg 278 Query: 334 gtccatattattatgatgacttggaggagatgatgtttgacagcatatccgaattcttca 393 || | |||||||||| || |||| ||| ||||||| ||||| | ||| ||| ||||| Sbjct: 279 gtaaacattattatgaagatttggtggatatgatgtatgacacagtgtccaaatccttca 338 Query: 394 atgctgactttgaggatggaagtgttggggaggttgctgaacaagtattgattatgcatg 453 |||| |||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||| Sbjct: 339 atgcggactttgaggatggtagtgttgaagaggtcgctgaacaattgttgattatgcatg 398 Query: 454 aagaatgcctgcaaaacaactattcgtcgattgacaagctaaggaacacacgcactcaag 513 ||||||||||||||| ||||||||| || |||| ||||| |||||| |||| |||||| Sbjct: 399 aagaatgcctgcaaagcaactattcttcagttgagaagcttaggaactcacgtgctcaag 458 Query: 514 gagctgctgtttcccaaagtagaatgatggtaactgatgacgacgatgatagctcagatg 573 | |||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| Sbjct: 459 ggaatgctgtttcccagagtagaaagatggtggttgatggagacgatgatagctcagatg 518 Query: 574 acga 577 |||| Sbjct: 519 acga 522
>dbj|AK105183.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A06, full insert sequence Length = 849 Score = 317 bits (160), Expect = 4e-83 Identities = 358/424 (84%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 99 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 158 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 159 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 218 Query: 274 cccgcgccaaggccgaccggctcgccgccgacgtcctctccttcttcaccggctccaaag 333 |||||||||||||||||| |||||||| | ||||||| | ||| || |||||| | Sbjct: 219 cccgcgccaaggccgaccagctcgccgaatccatcctctcgtggttcgccaactccaagg 278 Query: 334 gtccatattattatgatgacttggaggagatgatgtttgacagcatatccgaattcttca 393 || | |||||||||| || |||| ||| ||||||| ||||| | ||| ||| ||||| Sbjct: 279 gtaaacattattatgaagatttggtggatatgatgtatgacacagtgtccaaatccttca 338 Query: 394 atgctgactttgaggatggaagtgttggggaggttgctgaacaagtattgattatgcatg 453 |||| |||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||| Sbjct: 339 atgcggactttgaggatggtagtgttgaagaggtcgctgaacaattgttgattatgcatg 398 Query: 454 aagaatgcctgcaaaacaactattcgtcgattgacaagctaaggaacacacgcactcaag 513 ||||||||||||||| ||||||||| || |||| ||||| |||||| |||| |||||| Sbjct: 399 aagaatgcctgcaaagcaactattcttcagttgagaagcttaggaactcacgtgctcaag 458 Query: 514 gagctgctgtttcccaaagtagaatgatggtaactgatgacgacgatgatagctcagatg 573 | |||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| Sbjct: 459 ggaatgctgtttcccagagtagaaagatggtggttgatggagacgatgatagctcagatg 518 Query: 574 acga 577 |||| Sbjct: 519 acga 522
>dbj|AK099585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042E18, full insert sequence Length = 956 Score = 264 bits (133), Expect = 6e-67 Identities = 317/378 (83%), Gaps = 4/378 (1%) Strand = Plus / Plus Query: 204 atcgggctggtgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggc 263 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 242 atcgggctggtgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggc 301 Query: 264 ggccgcgaatcccgcgccaaggccgaccggctcgccgccgacgtcctctccttcttcacc 323 |||||||| ||||||||||||||||||| |||||||| | ||||||| | ||| || Sbjct: 302 ggccgcgactcccgcgccaaggccgaccagctcgccgaatccatcctctcgtggttcgcc 361 Query: 324 ggctccaaaggtccatattattatgatgacttggaggagatgatgtttgacagcatatcc 383 |||||| ||| | |||||||||| || |||| ||| ||||||| ||||| | ||| Sbjct: 362 aactccaagggtaaacattattatgaagatttggtggatatgatgtatgacacagtgtcc 421 Query: 384 gaattcttcaatgctgactttgaggatggaagtgttg----gggaggttgctgaacaagt 439 ||| ||||||||| |||||||||||||| ||||||| | |||| ||||||||| | Sbjct: 422 aaatccttcaatgcggactttgaggatggtagtgttgaagagacaggtcgctgaacaatt 481 Query: 440 attgattatgcatgaagaatgcctgcaaaacaactattcgtcgattgacaagctaaggaa 499 |||||||||||||||||||||||||||| ||||||||| || |||| ||||| ||||| Sbjct: 482 gttgattatgcatgaagaatgcctgcaaagcaactattcttcagttgagaagcttaggaa 541 Query: 500 cacacgcactcaaggagctgctgtttcccaaagtagaatgatggtaactgatgacgacga 559 | |||| ||||||| |||||||||||| ||||||| |||||| ||||| ||||| Sbjct: 542 ctcacgtgctcaagggaatgctgtttcccagagtagaaagatggtggttgatggagacga 601 Query: 560 tgatagctcagatgacga 577 |||||||||||||||||| Sbjct: 602 tgatagctcagatgacga 619
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 180 bits (91), Expect = 7e-42 Identities = 133/147 (90%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 25199633 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 25199692 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 25199693 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 25199752 Query: 274 cccgcgccaaggccgaccggctcgccg 300 |||||||||||||||||| |||||||| Sbjct: 25199753 cccgcgccaaggccgaccagctcgccg 25199779 Score = 99.6 bits (50), Expect = 2e-17 Identities = 98/114 (85%) Strand = Plus / Plus Query: 424 aggttgctgaacaagtattgattatgcatgaagaatgcctgcaaaacaactattcgtcga 483 |||| ||||||||| | |||||||||||||||||||||||||||| ||||||||| || Sbjct: 25201420 aggtcgctgaacaattgttgattatgcatgaagaatgcctgcaaagcaactattcttcag 25201479 Query: 484 ttgacaagctaaggaacacacgcactcaaggagctgctgtttcccaaagtagaa 537 |||| ||||| |||||| |||| ||||||| |||||||||||| ||||||| Sbjct: 25201480 ttgagaagcttaggaactcacgtgctcaagggaatgctgtttcccagagtagaa 25201533 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 340 attattatgatgacttggaggagatgatgtttgacagcatatccgaattcttcaatgctg 399 |||||||||| || |||| ||| ||||||| ||||| | ||| ||| ||||||||| | Sbjct: 25200315 attattatgaagatttggtggatatgatgtatgacacagtgtccaaatccttcaatgcgg 25200374 Query: 400 actttgaggatggaagtgttg 420 ||||||||||||| ||||||| Sbjct: 25200375 actttgaggatggtagtgttg 25200395 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 555 gacgatgatagctcagatgacga 577 ||||||||||||||||||||||| Sbjct: 25202386 gacgatgatagctcagatgacga 25202408
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 180 bits (91), Expect = 7e-42 Identities = 133/147 (90%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 64756 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 64815 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 64816 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 64875 Query: 274 cccgcgccaaggccgaccggctcgccg 300 |||||||||||||||||| |||||||| Sbjct: 64876 cccgcgccaaggccgaccagctcgccg 64902 Score = 99.6 bits (50), Expect = 2e-17 Identities = 98/114 (85%) Strand = Plus / Plus Query: 424 aggttgctgaacaagtattgattatgcatgaagaatgcctgcaaaacaactattcgtcga 483 |||| ||||||||| | |||||||||||||||||||||||||||| ||||||||| || Sbjct: 66543 aggtcgctgaacaattgttgattatgcatgaagaatgcctgcaaagcaactattcttcag 66602 Query: 484 ttgacaagctaaggaacacacgcactcaaggagctgctgtttcccaaagtagaa 537 |||| ||||| |||||| |||| ||||||| |||||||||||| ||||||| Sbjct: 66603 ttgagaagcttaggaactcacgtgctcaagggaatgctgtttcccagagtagaa 66656 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 340 attattatgatgacttggaggagatgatgtttgacagcatatccgaattcttcaatgctg 399 |||||||||| || |||| ||| ||||||| ||||| | ||| ||| ||||||||| | Sbjct: 65438 attattatgaagatttggtggatatgatgtatgacacagtgtccaaatccttcaatgcgg 65497 Query: 400 actttgaggatggaagtgttg 420 ||||||||||||| ||||||| Sbjct: 65498 actttgaggatggtagtgttg 65518 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 555 gacgatgatagctcagatgacga 577 ||||||||||||||||||||||| Sbjct: 67509 gacgatgatagctcagatgacga 67531
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0064I19 Length = 111644 Score = 180 bits (91), Expect = 7e-42 Identities = 133/147 (90%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgccgcaggcggccgcggccctccaggagggcatcgggctgg 213 |||||||||||| ||||||| | |||||||| || |||||| ||||| |||||||||| Sbjct: 103808 gcggcggcggggcgctctcggcccaggcggcggctgccctcggcgaggggatcgggctgg 103867 Query: 214 tgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggccgcgaat 273 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 103868 tgttcgggcgctggacggcgctgcagatggcggtggagaaccagtggggcggccgcgact 103927 Query: 274 cccgcgccaaggccgaccggctcgccg 300 |||||||||||||||||| |||||||| Sbjct: 103928 cccgcgccaaggccgaccagctcgccg 103954 Score = 99.6 bits (50), Expect = 2e-17 Identities = 98/114 (85%) Strand = Plus / Plus Query: 424 aggttgctgaacaagtattgattatgcatgaagaatgcctgcaaaacaactattcgtcga 483 |||| ||||||||| | |||||||||||||||||||||||||||| ||||||||| || Sbjct: 105595 aggtcgctgaacaattgttgattatgcatgaagaatgcctgcaaagcaactattcttcag 105654 Query: 484 ttgacaagctaaggaacacacgcactcaaggagctgctgtttcccaaagtagaa 537 |||| ||||| |||||| |||| ||||||| |||||||||||| ||||||| Sbjct: 105655 ttgagaagcttaggaactcacgtgctcaagggaatgctgtttcccagagtagaa 105708 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 340 attattatgatgacttggaggagatgatgtttgacagcatatccgaattcttcaatgctg 399 |||||||||| || |||| ||| ||||||| ||||| | ||| ||| ||||||||| | Sbjct: 104490 attattatgaagatttggtggatatgatgtatgacacagtgtccaaatccttcaatgcgg 104549 Query: 400 actttgaggatggaagtgttg 420 ||||||||||||| ||||||| Sbjct: 104550 actttgaggatggtagtgttg 104570 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 555 gacgatgatagctcagatgacga 577 ||||||||||||||||||||||| Sbjct: 106561 gacgatgatagctcagatgacga 106583
>gb|AY107904.1| Zea mays PCO096404 mRNA sequence Length = 910 Score = 143 bits (72), Expect = 1e-30 Identities = 81/84 (96%) Strand = Plus / Plus Query: 208 ggctggtgttcgggcggtggacggcgctgcagatggcggtggagaacgggtggggcggcc 267 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 189 ggctggtgttcgggcggtggacggcgctgcagatggcggtggagaaccagtggggcggcc 248 Query: 268 gcgaatcccgcgccaaggccgacc 291 |||| ||||||||||||||||||| Sbjct: 249 gcgactcccgcgccaaggccgacc 272 Score = 101 bits (51), Expect = 5e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 333 ggtccatattattatgatgacttggaggagatgatgtttgacagcatatccgaattcttc 392 ||||||||||||| || ||||||| || ||||||| ||||| || || |||| || Sbjct: 314 ggtccatattatttcgaagacttggtcgatatgatgtatgacaaaatttctgaatctttt 373 Query: 393 aatgctgactttgaggatggaagtgttggggaggttgctgaacaagtattgattatgcat 452 ||||| ||||||||||| ||| ||| ||||||||||||||| | ||||| || ||| Sbjct: 374 aatgcctactttgaggataatagtattgaggaggttgctgaacagtttttgatcatacat 433 Query: 453 gaagaatgcctgcaaaacaactattcgtcgattgacaagctaaggaa 499 ||||||||||||||||||||||||||||| || || ||||||||||| Sbjct: 434 gaagaatgcctgcaaaacaactattcgtctatagagaagctaaggaa 480 Score = 46.1 bits (23), Expect = 0.25 Identities = 44/51 (86%) Strand = Plus / Plus Query: 632 gccaaagcctcccaagcctgcccctgatgctgatgggtggactgttgtgcc 682 ||||| ||| ||||||||| | || || || |||||||||||||||||||| Sbjct: 625 gccaaggccccccaagcctactccagacgccgatgggtggactgttgtgcc 675
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Plus Query: 278 cgccaaggccgaccggctcgccgccgacgtc 308 ||||||| ||||| ||||||||||||||||| Sbjct: 203286 cgccaagaccgacgggctcgccgccgacgtc 203316
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 591 gatgatgacgacggcgatgaatc 613 ||||||||||||||||||||||| Sbjct: 129678 gatgatgacgacggcgatgaatc 129700
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 591 gatgatgacgacggcgatgaatc 613 ||||||||||||||||||||||| Sbjct: 58239 gatgatgacgacggcgatgaatc 58261 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 591 gatgatgacgacggcgatgaatc 613 ||||||||||||||||||||||| Sbjct: 210632 gatgatgacgacggcgatgaatc 210654
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 286 ccgaccggctcgccgccgacgtcctctccttcttc 320 |||||||||||||||||||| | ||| |||||||| Sbjct: 3980183 ccgaccggctcgccgccgacatgctcgccttcttc 3980149
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 284 ggccgaccggctcgccgccgacg 306 ||||||||||||||||||||||| Sbjct: 65603 ggccgaccggctcgccgccgacg 65625
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 591 gatgatgacgacggcgatgaatc 613 ||||||||||||||||||||||| Sbjct: 136402 gatgatgacgacggcgatgaatc 136380
>ref|XM_570396.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND00750) partial mRNA Length = 1431 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Plus Query: 278 cgccaaggccgaccggctcgccgccgacgtc 308 ||||||| ||||| ||||||||||||||||| Sbjct: 456 cgccaagaccgacgggctcgccgccgacgtc 486
>emb|AJ334832.1|HSA334832 Homo sapiens genomic sequence surrounding NotI site, clone NB1-047R Length = 673 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 293 gctcgccgccgacgtcctctcct 315 ||||||||||||||||||||||| Sbjct: 260 gctcgccgccgacgtcctctcct 282
>ref|NM_001050511.1| Oryza sativa (japonica cultivar-group) Os01g0698900 (Os01g0698900) mRNA, complete cds Length = 1149 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 590 ggatgatgacgacggcgatgaa 611 |||||||||||||||||||||| Sbjct: 492 ggatgatgacgacggcgatgaa 513
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 590 ggatgatgacgacggcgatgaa 611 |||||||||||||||||||||| Sbjct: 12569509 ggatgatgacgacggcgatgaa 12569488
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 590 ggatgatgacgacggcgatgaa 611 |||||||||||||||||||||| Sbjct: 28908205 ggatgatgacgacggcgatgaa 28908226
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454A11 Length = 152240 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 590 ggatgatgacgacggcgatgaa 611 |||||||||||||||||||||| Sbjct: 20828 ggatgatgacgacggcgatgaa 20849
>dbj|AP005438.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1723_B06 Length = 136853 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 590 ggatgatgacgacggcgatgaa 611 |||||||||||||||||||||| Sbjct: 54202 ggatgatgacgacggcgatgaa 54181
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 gccgaccggctcgccgccgacg 306 |||||||||||||||||||||| Sbjct: 27359 gccgaccggctcgccgccgacg 27380
>ref|XM_001232341.1| PREDICTED: Gallus gallus hypothetical protein LOC769130 (LOC769130), mRNA Length = 1413 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cgccgcgcctcgctcccgtcc 77 ||||||||||||||||||||| Sbjct: 687 cgccgcgcctcgctcccgtcc 667
>ref|NM_001061213.1| Oryza sativa (japonica cultivar-group) Os05g0153300 (Os05g0153300) mRNA, complete cds Length = 1638 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gcggcggcggggggctctcgc 174 ||||||||||||||||||||| Sbjct: 995 gcggcggcggggggctctcgc 975
>gb|CP000377.1| Silicibacter sp. TM1040, complete genome Length = 3200938 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 ggcgctgcagatggcggtgga 250 ||||||||||||||||||||| Sbjct: 1511359 ggcgctgcagatggcggtgga 1511379
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgc 174 ||||||||||||||||||||| Sbjct: 104216 gcggcggcggggggctctcgc 104236
>ref|XM_653932.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1420.2), mRNA Length = 2466 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gatgacttggaggagatgatg 368 ||||||||||||||||||||| Sbjct: 1630 gatgacttggaggagatgatg 1650
>ref|XM_652829.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0317.2), mRNA Length = 3777 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 548 tgatgacgacgatgatagctcagat 572 ||||||||||||||||||| ||||| Sbjct: 2841 tgatgacgacgatgatagcacagat 2865
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 caaggccgaccggctcgccgc 301 ||||||||||||||||||||| Sbjct: 255257 caaggccgaccggctcgccgc 255277
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent ansamitocin biosynthetic gene cluster I, partial sequence Length = 82746 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 283 aggccgaccggctcgccgccgacgt 307 |||||| |||||||||||||||||| Sbjct: 80705 aggccgcccggctcgccgccgacgt 80681
>gb|AC096739.3| Homo sapiens BAC clone RP11-213G21 from 4, complete sequence Length = 96482 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 tgctgactttgaggatggaag 415 ||||||||||||||||||||| Sbjct: 88838 tgctgactttgaggatggaag 88818
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 gctcgaacgcctccacgccgc 34 ||||||||||||||||||||| Sbjct: 21800752 gctcgaacgcctccacgccgc 21800732
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gcggcggcggggggctctcgc 174 ||||||||||||||||||||| Sbjct: 3010200 gcggcggcggggggctctcgc 3010220
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 274 cccgcgccaaggccgaccggctcgccgccgacg 306 |||||||||||||||| | ||| |||||||||| Sbjct: 1885909 cccgcgccaaggccgagccgctggccgccgacg 1885877 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 gccgaccggctcgccgccgac 305 ||||||||||||||||||||| Sbjct: 4440717 gccgaccggctcgccgccgac 4440697
>gb|AC019198.12| Homo sapiens BAC clone RP11-369J6 from 2, complete sequence Length = 151057 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 cttggaggagatgatgtttga 373 ||||||||||||||||||||| Sbjct: 38333 cttggaggagatgatgtttga 38313
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ggccgaccggctcgccgccga 304 ||||||||||||||||||||| Sbjct: 4636170 ggccgaccggctcgccgccga 4636150
>dbj|AK173502.1| Ciona intestinalis cDNA, clone:citb005a02, full insert sequence Length = 908 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aatgcctgcaaaacaactatt 477 ||||||||||||||||||||| Sbjct: 319 aatgcctgcaaaacaactatt 339
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 gctcgaacgcctccacgccgc 34 ||||||||||||||||||||| Sbjct: 11799 gctcgaacgcctccacgccgc 11819
>emb|BX088546.7| Mouse DNA sequence from clone RP23-96D6 on chromosome X, complete sequence Length = 109456 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 980 taaaatatcattttgaactga 1000 ||||||||||||||||||||| Sbjct: 62873 taaaatatcattttgaactga 62853 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 178,618,683 Number of extensions: 10179907 Number of successful extensions: 234681 Number of sequences better than 10.0: 39 Number of HSP's gapped: 234680 Number of HSP's successfully gapped: 57 Length of query: 1034 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1011 Effective length of database: 18,503,978,556 Effective search space: 18707522320116 Effective search space used: 18707522320116 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
