ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf168e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058359.1| Oryza sativa (japonica cultivar-group) Os03g0836300 (Os03g0836300) mRNA, complete cds Length = 982 Score = 202 bits (102), Expect = 2e-48 Identities = 159/178 (89%) Strand = Plus / Plus Query: 595 aggttcgaggtggaggtgcggctggacacggtgatgcagtacaaggggcgcaaggccaag 654 |||||||||||||||||| ||||||||||||||||||||||||||| | | ||||| | Sbjct: 621 aggttcgaggtggaggtgaggctggacacggtgatgcagtacaaggcgaggaaggcgcgg 680 Query: 655 tgcccgctggtcgtcatctgcacgctgagcctgcagctcgtcgacccggacgtcgccgcc 714 |||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 681 tgcccgctcgccgtcatctgcccgctgcagctgcagctcgtcgacccggacgtcgccgcc 740 Query: 715 acctccttccagaagaccaagtgcaccatcctccgggccaagatgtccggctgctagc 772 ||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||| Sbjct: 741 accgcgttccagaggaccaagtgcaccgtcctccgggccaagaagtccggatgctagc 798 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| |||| ||||| |||||| || || |||||||| || || || |||| ||||| Sbjct: 394 tgtcgctgcgtaacccgaacctgtaccgcggcatcagctacgaccccgtcgcggtggcct 453 Query: 428 tctccttcaacggcaccctgttcgacgagtccggcacggtggcggc 473 |||||||||||||||| | ||||||||||||| ||| ||| |||| Sbjct: 454 tctccttcaacggcacgcgcttcgacgagtccgccaccgtgccggc 499
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 202 bits (102), Expect = 2e-48 Identities = 159/178 (89%) Strand = Plus / Minus Query: 595 aggttcgaggtggaggtgcggctggacacggtgatgcagtacaaggggcgcaaggccaag 654 |||||||||||||||||| ||||||||||||||||||||||||||| | | ||||| | Sbjct: 25700 aggttcgaggtggaggtgaggctggacacggtgatgcagtacaaggcgaggaaggcgcgg 25641 Query: 655 tgcccgctggtcgtcatctgcacgctgagcctgcagctcgtcgacccggacgtcgccgcc 714 |||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 25640 tgcccgctcgccgtcatctgcccgctgcagctgcagctcgtcgacccggacgtcgccgcc 25581 Query: 715 acctccttccagaagaccaagtgcaccatcctccgggccaagatgtccggctgctagc 772 ||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||| Sbjct: 25580 accgcgttccagaggaccaagtgcaccgtcctccgggccaagaagtccggatgctagc 25523 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Minus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| |||| ||||| |||||| || || |||||||| || || || |||| ||||| Sbjct: 25927 tgtcgctgcgtaacccgaacctgtaccgcggcatcagctacgaccccgtcgcggtggcct 25868 Query: 428 tctccttcaacggcaccctgttcgacgagtccggcacggtggcggc 473 |||||||||||||||| | ||||||||||||| ||| ||| |||| Sbjct: 25867 tctccttcaacggcacgcgcttcgacgagtccgccaccgtgccggc 25822
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 202 bits (102), Expect = 2e-48 Identities = 159/178 (89%) Strand = Plus / Plus Query: 595 aggttcgaggtggaggtgcggctggacacggtgatgcagtacaaggggcgcaaggccaag 654 |||||||||||||||||| ||||||||||||||||||||||||||| | | ||||| | Sbjct: 34927022 aggttcgaggtggaggtgaggctggacacggtgatgcagtacaaggcgaggaaggcgcgg 34927081 Query: 655 tgcccgctggtcgtcatctgcacgctgagcctgcagctcgtcgacccggacgtcgccgcc 714 |||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 34927082 tgcccgctcgccgtcatctgcccgctgcagctgcagctcgtcgacccggacgtcgccgcc 34927141 Query: 715 acctccttccagaagaccaagtgcaccatcctccgggccaagatgtccggctgctagc 772 ||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||| Sbjct: 34927142 accgcgttccagaggaccaagtgcaccgtcctccgggccaagaagtccggatgctagc 34927199 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| |||| ||||| |||||| || || |||||||| || || || |||| ||||| Sbjct: 34926795 tgtcgctgcgtaacccgaacctgtaccgcggcatcagctacgaccccgtcgcggtggcct 34926854 Query: 428 tctccttcaacggcaccctgttcgacgagtccggcacggtggcggc 473 |||||||||||||||| | ||||||||||||| ||| ||| |||| Sbjct: 34926855 tctccttcaacggcacgcgcttcgacgagtccgccaccgtgccggc 34926900
>dbj|AK061174.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C03, full insert sequence Length = 982 Score = 202 bits (102), Expect = 2e-48 Identities = 159/178 (89%) Strand = Plus / Plus Query: 595 aggttcgaggtggaggtgcggctggacacggtgatgcagtacaaggggcgcaaggccaag 654 |||||||||||||||||| ||||||||||||||||||||||||||| | | ||||| | Sbjct: 621 aggttcgaggtggaggtgaggctggacacggtgatgcagtacaaggcgaggaaggcgcgg 680 Query: 655 tgcccgctggtcgtcatctgcacgctgagcctgcagctcgtcgacccggacgtcgccgcc 714 |||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 681 tgcccgctcgccgtcatctgcccgctgcagctgcagctcgtcgacccggacgtcgccgcc 740 Query: 715 acctccttccagaagaccaagtgcaccatcctccgggccaagatgtccggctgctagc 772 ||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||| Sbjct: 741 accgcgttccagaggaccaagtgcaccgtcctccgggccaagaagtccggatgctagc 798 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Plus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| |||| ||||| |||||| || || |||||||| || || || |||| ||||| Sbjct: 394 tgtcgctgcgtaacccgaacctgtaccgcggcatcagctacgaccccgtcgcggtggcct 453 Query: 428 tctccttcaacggcaccctgttcgacgagtccggcacggtggcggc 473 |||||||||||||||| | ||||||||||||| ||| ||| |||| Sbjct: 454 tctccttcaacggcacgcgcttcgacgagtccgccaccgtgccggc 499
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 69.9 bits (35), Expect = 2e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 689 agctcgtcgacccggacgtcgccgccacctccttccagaagaccaagtgcaccatcctcc 748 |||| |||||| |||| |||||||||| | | ||| ||| |||||||||||||||||||| Sbjct: 79395 agcttgtcgactcggaggtcgccgccatcgcgttctagaggaccaagtgcaccatcctcc 79336 Query: 749 gggccaa 755 ||||||| Sbjct: 79335 gggccaa 79329 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| ||||||||||||||||| || | |||||||| || ||| || |||| ||||| Sbjct: 79640 tgtcgctgcgcaaccccaacctgtacccaggcatcagctacgagcccgtcgcggtggcct 79581 Query: 428 tctccttcaacggcaccctgttcgacgagtccg 460 |||||||||| ||||||| |||| |||||||| Sbjct: 79580 tctccttcaatggcacccgcttcgtcgagtccg 79548
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 69.9 bits (35), Expect = 2e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 689 agctcgtcgacccggacgtcgccgccacctccttccagaagaccaagtgcaccatcctcc 748 |||| |||||| |||| |||||||||| | | ||| ||| |||||||||||||||||||| Sbjct: 14166899 agcttgtcgactcggaggtcgccgccatcgcgttctagaggaccaagtgcaccatcctcc 14166958 Query: 749 gggccaa 755 ||||||| Sbjct: 14166959 gggccaa 14166965 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 368 tgtcgatgcgcaaccccaacctgcactacgccatcagcttcgggccggtggcggcggcct 427 ||||| ||||||||||||||||| || | |||||||| || ||| || |||| ||||| Sbjct: 14166654 tgtcgctgcgcaaccccaacctgtacccaggcatcagctacgagcccgtcgcggtggcct 14166713 Query: 428 tctccttcaacggcaccctgttcgacgagtccg 460 |||||||||| ||||||| |||| |||||||| Sbjct: 14166714 tctccttcaatggcacccgcttcgtcgagtccg 14166746
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 52.0 bits (26), Expect = 0.004 Identities = 35/38 (92%) Strand = Plus / Plus Query: 604 gtggaggtgcggctggacacggtgatgcagtacaaggg 641 |||||| ||||||||||||||||| | ||||||||||| Sbjct: 241105 gtggagatgcggctggacacggtgctccagtacaaggg 241142
>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence Length = 235095 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Plus Query: 800 atttccttggatttcccttcctg 822 ||||||||||||||||||||||| Sbjct: 232784 atttccttggatttcccttcctg 232806
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Minus Query: 542 cgaagctgccggcgggcggcgcggcgg 568 |||||||| |||||||||||||||||| Sbjct: 3290550 cgaagctggcggcgggcggcgcggcgg 3290524
>gb|AC126445.5| Mus musculus BAC clone RP23-307P24 from 8, complete sequence Length = 167770 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Minus Query: 800 atttccttggatttcccttcctg 822 ||||||||||||||||||||||| Sbjct: 149541 atttccttggatttcccttcctg 149519
>ref|XM_001113460.1| PREDICTED: Macaca mulatta similar to tripartite motif protein TRIM14 isoform alpha (LOC715418), mRNA Length = 1768 Score = 44.1 bits (22), Expect = 0.90 Identities = 28/30 (93%) Strand = Plus / Minus Query: 759 gtccggctgctagcccctgcgcccgccatt 788 ||||||||||||||| | |||||||||||| Sbjct: 47 gtccggctgctagccgccgcgcccgccatt 18
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Plus Query: 877 catttgttgttggttgattatt 898 |||||||||||||||||||||| Sbjct: 333600 catttgttgttggttgattatt 333621
>dbj|AB227927.1| Aspergillus oryzae cDNA, contig sequence: AoEST4800 Length = 440 Score = 44.1 bits (22), Expect = 0.90 Identities = 31/34 (91%) Strand = Plus / Minus Query: 196 ctcatcgtcctcatcctcgccttcgccgtcatca 229 ||||||||||||||||||| ||||| | |||||| Sbjct: 291 ctcatcgtcctcatcctcgtcttcgtcatcatca 258
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 44.1 bits (22), Expect = 0.90 Identities = 31/34 (91%) Strand = Plus / Minus Query: 196 ctcatcgtcctcatcctcgccttcgccgtcatca 229 ||||||||||||||||||| ||||| | |||||| Sbjct: 2149375 ctcatcgtcctcatcctcgtcttcgtcatcatca 2149342
>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12 Length = 294800 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Plus Query: 548 tgccggcgggcggcgcggcgga 569 |||||||||||||||||||||| Sbjct: 60460 tgccggcgggcggcgcggcgga 60481
>emb|AL606465.21| Human DNA sequence from clone RP11-781D11 on chromosome 1 Contains a translation initiation factor SUI1 (SUI1) pseudogene, the gene for a novel protein (FLJ12666, FLJ44274), the NDUFS5 gene for 15kDA NADH dehydrogenase (ubiquinone) Fe-S protein 5 (NADH-coenzyme Q reductase) and a CpG island, complete sequence Length = 116103 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Plus Query: 875 ctcatttgttgttggttgatta 896 |||||||||||||||||||||| Sbjct: 75339 ctcatttgttgttggttgatta 75360
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 154 atcgccatctgggcggcgatcctgctcgt 182 |||| |||||||||| ||||||||||||| Sbjct: 125685 atcggcatctgggcgccgatcctgctcgt 125657
>dbj|AK240760.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J053045M08, full insert sequence Length = 2533 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcgccgt 224 |||| ||||||||||||||||| ||||||||| Sbjct: 326 cgtcgtcatcgtcctcatcctcctcttcgccgt 358
>ref|NM_001072513.1| Oryza sativa (japonica cultivar-group) Os12g0114100 (Os12g0114100) mRNA, complete cds Length = 2984 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ggtgggcggcgtcgacaaggc 536 ||||||||||||||||||||| Sbjct: 1809 ggtgggcggcgtcgacaaggc 1789
>ref|NM_001063965.1| Oryza sativa (japonica cultivar-group) Os06g0295000 (Os06g0295000) mRNA, complete cds Length = 2568 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcgccgt 224 |||| ||||||||||||||||| ||||||||| Sbjct: 264 cgtcgtcatcgtcctcatcctcctcttcgccgt 296
>ref|NM_001048436.1| Oryza sativa (japonica cultivar-group) Os01g0127100 (Os01g0127100) mRNA, complete cds Length = 1688 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 283 ctgcagctcgtcgacccggac 263
>ref|NM_001048435.1| Oryza sativa (japonica cultivar-group) Os01g0127000 (Os01g0127000) mRNA, partial cds Length = 1669 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 1060 ctgcagctcgtcgacccggac 1080
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 19168411 cgtcgtcatcgtcctcatcctcgtcttcg 19168439
>ref|XM_362835.1| Magnaporthe grisea 70-15 hypothetical protein (MG08602.4) partial mRNA Length = 948 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 197 tcatcgtcctcatcctcgccttcgccgtc 225 |||||||| |||||||| ||||||||||| Sbjct: 719 tcatcgtcttcatcctccccttcgccgtc 691
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 411 gccggtggcggcggccttctccttc 435 |||||||||||||||||||| |||| Sbjct: 748232 gccggtggcggcggccttcttcttc 748256
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 cggtggcggccttcaacctcg 484 ||||||||||||||||||||| Sbjct: 1031984 cggtggcggccttcaacctcg 1032004
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 699 cccggacgtcgccgccacctc 719 ||||||||||||||||||||| Sbjct: 22754 cccggacgtcgccgccacctc 22774
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 ggtgggcggcgtcgacaaggccctc 540 |||||||||||||||| |||||||| Sbjct: 157624 ggtgggcggcgtcgacgaggccctc 157648
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 gtggcggcggccttctccttc 435 ||||||||||||||||||||| Sbjct: 232510 gtggcggcggccttctccttc 232490
>ref|NM_206004.1| Drosophila melanogaster brain tumor CG10719-RC, transcript variant C (brat), mRNA Length = 4619 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 458 cgtcgtcatcgtcctcatcctcgtcttcg 486
>ref|NM_134302.1| Drosophila melanogaster brain tumor CG10719-RB, transcript variant B (brat), mRNA Length = 4933 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 772 cgtcgtcatcgtcctcatcctcgtcttcg 800
>ref|NM_057597.2| Drosophila melanogaster brain tumor CG10719-RA, transcript variant A (brat), mRNA Length = 5274 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 1113 cgtcgtcatcgtcctcatcctcgtcttcg 1141
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 402 cagcttcgggccggtggcggcggcc 426 ||||||| ||||||||||||||||| Sbjct: 42039 cagcttcaggccggtggcggcggcc 42015
>gb|AY129441.1| Drosophila melanogaster LD16270 full insert cDNA Length = 3901 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 442 cgtcgtcatcgtcctcatcctcgtcttcg 470
>gb|AY055852.1| Xanthobacter sp. Py2 sigma-54 dependent transcriptional activator (acxR), acetone carboxylase beta subunit (acxA), acetone carboxylase alpha subunit (acxB), and acetone carboxylase gamma subunit (acxC) genes, complete cds Length = 8161 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 ggtggcggcggccttctcctt 434 ||||||||||||||||||||| Sbjct: 3954 ggtggcggcggccttctcctt 3934
>gb|AF251789.1| Xanthobacter sp. Py2 acetone carboxylase beta subunit (acxA) and acetone carboxylase alpha subunit (acxB) genes, partial cds Length = 2699 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 ggtggcggcggccttctcctt 434 ||||||||||||||||||||| Sbjct: 1536 ggtggcggcggccttctcctt 1516
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 ggtgggcggcgtcgacaaggc 536 ||||||||||||||||||||| Sbjct: 700093 ggtgggcggcgtcgacaaggc 700113 Score = 42.1 bits (21), Expect = 3.6 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 197 tcatcgtcctcatcctcgccttcgccgtcatcaagcc 233 |||||||| |||||||||||| || |||||||||||| Sbjct: 9744956 tcatcgtcttcatcctcgcctccg-cgtcatcaagcc 9744991
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 192 cgtcctcatcgtcctcatcctcgccttcgccgt 224 |||| ||||||||||||||||| ||||||||| Sbjct: 10717577 cgtcgtcatcgtcctcatcctcctcttcgccgt 10717545
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 1490275 ctgcagctcgtcgacccggac 1490255 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 692 tcgtcgacccggacgtcgccgccac 716 ||||||||||| ||||||||||||| Sbjct: 12413885 tcgtcgacccgaacgtcgccgccac 12413909
>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13, complete sequence Length = 189908 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 714 cacctccttccagaagaccaa 734 ||||||||||||||||||||| Sbjct: 2075 cacctccttccagaagaccaa 2095
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 ccaccacggcggcgaccgcca 325 ||||||||||||||||||||| Sbjct: 5948497 ccaccacggcggcgaccgcca 5948517
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 ccggcacggtggcggccttcaacct 482 |||||||||||||||||||| |||| Sbjct: 262935 ccggcacggtggcggccttcgacct 262911
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 ccaccacggcggcgaccgcca 325 ||||||||||||||||||||| Sbjct: 207437 ccaccacggcggcgaccgcca 207457
>gb|AC083876.2|AC083876 Homo sapiens chromosome 7 clone RP11-138E18, complete sequence Length = 172010 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 agagtggaactggaccaagat 155 ||||||||||||||||||||| Sbjct: 20125 agagtggaactggaccaagat 20105
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 ggcggcggccttctccttcaacggc 441 |||||||||||||||||||| |||| Sbjct: 875477 ggcggcggccttctccttcagcggc 875501
>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036B02 Length = 168253 Score = 42.1 bits (21), Expect = 3.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 192 cgtcctcatcgtcctcatcctcgccttcgccgt 224 |||| ||||||||||||||||| ||||||||| Sbjct: 70640 cgtcgtcatcgtcctcatcctcctcttcgccgt 70608
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 55923 ctgcagctcgtcgacccggac 55903
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 692 tcgtcgacccggacgtcgccgccac 716 ||||||||||| ||||||||||||| Sbjct: 99530 tcgtcgacccgaacgtcgccgccac 99554
>gb|AF195873.1|AF195873 Drosophila melanogaster brain tumor (brat) gene, brat-fs3 allele, complete cds Length = 3114 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 266 cgtcgtcatcgtcctcatcctcgtcttcg 294
>gb|AF195872.1|AF195872 Drosophila melanogaster brain tumor (brat) gene, brat-ts1 allele, complete cds Length = 3114 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 266 cgtcgtcatcgtcctcatcctcgtcttcg 294
>gb|AF195871.1|AF195871 Drosophila melanogaster brain tumor (brat) gene, brat-14 allele, complete cds Length = 3114 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 266 cgtcgtcatcgtcctcatcctcgtcttcg 294
>gb|AF195870.1|AF195870 Drosophila melanogaster brain tumor (brat) gene, brat-11 allele, complete cds Length = 3114 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 266 cgtcgtcatcgtcctcatcctcgtcttcg 294
>gb|AF119332.1|AF119332 Drosophila melanogaster brain tumor (brat) mRNA, complete cds Length = 4933 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 772 cgtcgtcatcgtcctcatcctcgtcttcg 800
>dbj|AK106749.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-C07, full insert sequence Length = 1688 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 283 ctgcagctcgtcgacccggac 263
>dbj|AK105526.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G04, full insert sequence Length = 1669 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 1060 ctgcagctcgtcgacccggac 1080
>dbj|AK072172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129I24, full insert sequence Length = 2270 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ggtgggcggcgtcgacaaggc 536 ||||||||||||||||||||| Sbjct: 1047 ggtgggcggcgtcgacaaggc 1027
>dbj|AK067447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M03, full insert sequence Length = 2985 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ggtgggcggcgtcgacaaggc 536 ||||||||||||||||||||| Sbjct: 1810 ggtgggcggcgtcgacaaggc 1790
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 154 atcgccatctgggcggcgatcctgctcgt 182 |||| |||||||||| ||||||||||||| Sbjct: 141640 atcggcatctgggcgccgatcctgctcgt 141612
>gb|AC007176.1|AC007176 Drosophila melanogaster, chromosome 2L, region 37C1-46B2, BAC clones DS04472 and BACR48O01, complete sequence Length = 160005 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 97109 cgtcgtcatcgtcctcatcctcgtcttcg 97137
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 ggtgggcggcgtcgacaaggccctc 540 |||||||||||||||| |||||||| Sbjct: 113994 ggtgggcggcgtcgacgaggccctc 114018
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 ggcggcggccttctccttcaacggc 441 |||||||||||||||||||| |||| Sbjct: 542058 ggcggcggccttctccttcagcggc 542082
>emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa0054I14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148089 Score = 42.1 bits (21), Expect = 3.6 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 197 tcatcgtcctcatcctcgccttcgccgtcatcaagcc 233 |||||||| |||||||||||| || |||||||||||| Sbjct: 70913 tcatcgtcttcatcctcgcctccg-cgtcatcaagcc 70948
>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118211 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ggtgggcggcgtcgacaaggc 536 ||||||||||||||||||||| Sbjct: 79041 ggtgggcggcgtcgacaaggc 79021
>gb|DQ138871.1| Drosophila erecta voucher stock #14021-0224.0 CG10719 gene, partial cds Length = 3087 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>gb|DQ138870.1| Drosophila yakuba strain T33 CG10719 gene, partial cds Length = 3066 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>gb|DQ138869.1| Drosophila yakuba strain Tai18 CG10719 gene, partial cds Length = 3066 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>gb|DQ138868.1| Drosophila simulans strain Ky-b CG10719 gene, partial cds Length = 3075 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>gb|DQ138867.1| Drosophila simulans strain Ky-a CG10719 gene, partial cds Length = 3075 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>gb|DQ138866.1| Drosophila melanogaster strain Ral1 CG10719 gene, partial cds Length = 3072 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 245 cgtcgtcatcgtcctcatcctcgtcttcg 273
>dbj|AB022432.1| Drosophila melanogaster mRNA for transcription factor, complete cds Length = 4508 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 cgtcctcatcgtcctcatcctcgccttcg 220 |||| |||||||||||||||||| ||||| Sbjct: 1068 cgtcgtcatcgtcctcatcctcgtcttcg 1096
>gb|M33159.1|TTHISOR T.thermophilus insertion sequences Is1000A and Is1000B Length = 6434 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 417 ggcggcggccttctccttcaacggc 441 |||||||||||||||||||| |||| Sbjct: 2471 ggcggcggccttctccttcagcggc 2447
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 ctgcagctcgtcgacccggac 705 ||||||||||||||||||||| Sbjct: 139896 ctgcagctcgtcgacccggac 139876 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 137,673,822 Number of extensions: 8524148 Number of successful extensions: 192884 Number of sequences better than 10.0: 72 Number of HSP's gapped: 192882 Number of HSP's successfully gapped: 80 Length of query: 943 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 920 Effective length of database: 18,503,978,556 Effective search space: 17023660271520 Effective search space used: 17023660271520 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
