ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P09062:ODB2_PSEPU Lipoamide acyltransferase component of branche... 32 4.1
2Q7VDF1:HIS6_PROMA Imidazole glycerol phosphate synthase subunit ... 32 5.3

>P09062:ODB2_PSEPU Lipoamide acyltransferase component of branched-chain alpha-keto|
           acid dehydrogenase complex - Pseudomonas putida
          Length = 423
 Score = 32.0 bits (71), Expect = 4.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 8   EKSLTPPTRSAFGKYRAIDAVFRRRPQSPLAAPAVHKRAPDEG 136
           +K + P    A   + A   V R+    PLA+PAV KRA D G
Sbjct: 108 QKDVKPAAYQASASHEAAPIVPRQPGDKPLASPAVRKRALDAG 150



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>Q7VDF1:HIS6_PROMA Imidazole glycerol phosphate synthase subunit hisF -|
           Prochlorococcus marinus
          Length = 257

 Score = 31.6 bits (70), Expect = 5.3
 Identities = 31/95 (32%), Positives = 41/95 (43%)
 Frame = +3

Query: 390 PMLTSALHKEIGSGVVKLALESDTRSARRRLVEEYVWAVFCNGRKAGYSIRRKDASDDEL 569
           P L S    + GS  + +A++     A+RRL E   W VF NG        RK+   D L
Sbjct: 110 PGLVSRGACQFGSQCIVVAID-----AKRRLEESSGWDVFVNG-------GRKNTGLDAL 157

Query: 570 HVMRLLRGVSMGAGVLPAAPEKDGGVPAGPDGELT 674
              R  + V +GAG +        G   G D ELT
Sbjct: 158 SWAR--KVVELGAGEILLTSMDGDGTQKGYDLELT 190


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 115,419,394
Number of extensions: 2148950
Number of successful extensions: 7111
Number of sequences better than 10.0: 2
Number of HSP's gapped: 7110
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 221
Effective length of database: 69,416,809
Effective search space: 15341114789
Effective search space used: 15341114789
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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