ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf61e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P80680:FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable cha... 135 2e-31
2P38365:FTRV_SPIOL Ferredoxin-thioredoxin reductase, variable cha... 79 2e-14
3Q55781:FTRV_SYNY3 Ferredoxin-thioredoxin reductase, variable cha... 47 9e-05
4P24018:FTRV_SYNP6 Ferredoxin-thioredoxin reductase, variable cha... 41 0.008

>P80680:FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable chain - Zea mays (Maize)|
          Length = 97
 Score =  135 bits (341), Expect = 2e-31
 Identities = 62/74 (83%), Positives = 69/74 (93%)
 Frame = +2

Query: 374 APKVGRRVRVTAPLRVYHVVKAPDLDIQGMEGVIKQYVGVWKGKRITANFPFKVEFQLTV 553
           APK+GRRVRVTAPLRVYHV+KAPDLDIQGMEGV+KQYV VWKGKR+TANFPFKVEF+L V
Sbjct: 15  APKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAV 74

Query: 554 DTQPKPVKLFVHLR 595
           + QPKPV+ F HLR
Sbjct: 75  EGQPKPVRFFAHLR 88



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>P38365:FTRV_SPIOL Ferredoxin-thioredoxin reductase, variable chain, chloroplast|
           precursor - Spinacia oleracea (Spinach)
          Length = 174

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
 Frame = +2

Query: 380 KVGRRVRVTAPLRVYHVVKAPDLDIQ-GMEGVIKQYVGVWKGKRITANFPFKVEFQLTVD 556
           KVG +V+V +PL+VYHV K P++++   M GVIKQYVG WKGK I+ N+PFKVE+++ V 
Sbjct: 94  KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVP 153

Query: 557 TQPKPVKLFVHLR 595
            +   VKL VHL+
Sbjct: 154 DRGS-VKLVVHLK 165



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>Q55781:FTRV_SYNY3 Ferredoxin-thioredoxin reductase, variable chain - Synechocystis|
           sp. (strain PCC 6803)
          Length = 75

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = +2

Query: 383 VGRRVRVTAPLRVYHVV--KAPDLDIQGMEGVIKQYVGVWKGKRITANFPFKVEFQ 544
           VG RVRVT+ + VYH    K    D+QGMEG +   +  W+G+ I+AN P  V+F+
Sbjct: 3   VGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKFE 58



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>P24018:FTRV_SYNP6 Ferredoxin-thioredoxin reductase, variable chain - Synechococcus|
           sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
           (Anacystis nidulans)
          Length = 73

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +2

Query: 383 VGRRVRVTAPLRVYHVVKAPD-----LDIQGMEGVIKQYVGVWKGKRITANFPFKVEF 541
           VG RVRV   + VYH    PD      D++  EG I   +  W GK I+ANFP+ V F
Sbjct: 3   VGDRVRVKESVVVYH---HPDHRNQAFDLKDAEGEIAAILTEWNGKPISANFPYLVSF 57


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 101,445,933
Number of extensions: 1781899
Number of successful extensions: 4827
Number of sequences better than 10.0: 4
Number of HSP's gapped: 4823
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 212
Effective length of database: 69,691,104
Effective search space: 14774514048
Effective search space used: 14774514048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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