ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf46g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9NQC3:RTN4_HUMAN Reticulon-4 - Homo sapiens (Human) 47 1e-04
2Q99P72:RTN4_MOUSE Reticulon-4 - Mus musculus (Mouse) 46 2e-04
3Q9JK11:RTN4_RAT Reticulon-4 - Rattus norvegicus (Rat) 46 3e-04
4Q28D16:RTN3_XENTR Reticulon-3 - Xenopus tropicalis (Western claw... 45 6e-04
5Q5J6M8:RTN3A_XENLA Reticulon-3-A - Xenopus laevis (African clawe... 44 8e-04
6Q64548:RTN1_RAT Reticulon-1 - Rattus norvegicus (Rat) 43 0.002
7Q5IS59:RTN1_PANTR Reticulon-1 - Pan troglodytes (Chimpanzee) 43 0.002
8Q8K0T0:RTN1_MOUSE Reticulon-1 - Mus musculus (Mouse) 43 0.002
9Q68EW1:RTN3B_XENLA Reticulon-3-B - Xenopus laevis (African clawe... 42 0.003
10Q16799:RTN1_HUMAN Reticulon-1 - Homo sapiens (Human) 42 0.003
11Q6RJR6:RTN3_RAT Reticulon-3 - Rattus norvegicus (Rat) 42 0.004
12O70622:RTN2_MOUSE Reticulon-2 - Mus musculus (Mouse) 42 0.004
13Q9ES97:RTN3_MOUSE Reticulon-3 - Mus musculus (Mouse) 42 0.005
14Q5RBL9:RTN3_PONPY Reticulon-3 - Pongo pygmaeus (Orangutan) 41 0.007
15O95197:RTN3_HUMAN Reticulon-3 - Homo sapiens (Human) 41 0.007
16Q08D83:RTN3_BOVIN Reticulon-3 - Bos taurus (Bovine) 41 0.007
17Q04947:RTN1_YEAST Reticulon-like protein 1 - Saccharomyces cerev... 41 0.009
18O75298:RTN2_HUMAN Reticulon-2 - Homo sapiens (Human) 40 0.011
19P13698:PDGFA_XENLA Platelet-derived growth factor A chain precur... 34 0.81
20Q13519:PNOC_HUMAN Nociceptin precursor [Contains: Neuropeptide 1... 33 1.4
21Q8AVK2:LN28B_XENLA Lin-28 homolog B - Xenopus laevis (African cl... 33 1.8
22Q83S00:FTSK_SHIFL DNA translocase ftsK - Shigella flexneri 32 4.0
23P46889:FTSK_ECOLI DNA translocase ftsK - Escherichia coli 32 4.0
24Q8X5H9:FTSK_ECO57 DNA translocase ftsK - Escherichia coli O157:H7 32 4.0
25P28576:PDGFA_RAT Platelet-derived growth factor A chain precurso... 32 4.0
26P34007:PDGFA_RABIT Platelet-derived growth factor A chain precur... 32 4.0
27P20033:PDGFA_MOUSE Platelet-derived growth factor A chain precur... 32 4.0
28P04085:PDGFA_HUMAN Platelet-derived growth factor A chain precur... 32 4.0
29Q8FJC7:FTSK_ECOL6 DNA translocase ftsK - Escherichia coli O6 32 5.2
30Q12443:RTN2_YEAST Reticulon-like protein 2 - Saccharomyces cerev... 31 8.9
31Q2KJ15:PDGFA_BOVIN Platelet-derived growth factor A chain precur... 31 8.9

>Q9NQC3:RTN4_HUMAN Reticulon-4 - Homo sapiens (Human)|
          Length = 1192
 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 47/82 (57%)
 Frame = +1

Query: 403  VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
            + RL+ +   +D+   +   V +++ + V   F+ LTLL L ++   +VP +YER++ ++
Sbjct: 1106 LRRLFLV---DDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQI 1162

Query: 583  DHLVAAGARDVRTHFAKMDSGV 648
            DH +    ++V+   AK+ + +
Sbjct: 1163 DHYLGLANKNVKDAMAKIQAKI 1184



to top

>Q99P72:RTN4_MOUSE Reticulon-4 - Mus musculus (Mouse)|
          Length = 1162

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 46/82 (56%)
 Frame = +1

Query: 403  VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
            + RL+ +   +D+   +   V +++ + V   F+ LTLL L ++   ++P +YER++ ++
Sbjct: 1076 LRRLFLV---DDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQI 1132

Query: 583  DHLVAAGARDVRTHFAKMDSGV 648
            DH +    + V+   AK+ + +
Sbjct: 1133 DHYLGLANKSVKDAMAKIQAKI 1154



to top

>Q9JK11:RTN4_RAT Reticulon-4 - Rattus norvegicus (Rat)|
          Length = 1163

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 20/82 (24%), Positives = 46/82 (56%)
 Frame = +1

Query: 403  VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
            + RL+ +   +D+   +   V +++ + V   F+ LTLL L ++   ++P +YER++ ++
Sbjct: 1077 LRRLFLV---DDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQVQI 1133

Query: 583  DHLVAAGARDVRTHFAKMDSGV 648
            DH +    + V+   AK+ + +
Sbjct: 1134 DHYLGLANKSVKDAMAKIQAKI 1155



to top

>Q28D16:RTN3_XENTR Reticulon-3 - Xenopus tropicalis (Western clawed frog) (Silurana|
           tropicalis)
          Length = 213

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 23/88 (26%), Positives = 47/88 (53%)
 Frame = +1

Query: 400 FVHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHE 579
           ++ RL+ +   ED+   +   + +++ + V   F+ +TLL L V+   T P +YE+Y+ +
Sbjct: 125 YIVRLFLV---EDLVDSLKLALLMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQ 181

Query: 580 VDHLVAAGARDVRTHFAKMDSGVLRKIP 663
           +DH V+     V +H   +   +  K+P
Sbjct: 182 IDHYVSL----VHSHVKSITEKIQAKLP 205



to top

>Q5J6M8:RTN3A_XENLA Reticulon-3-A - Xenopus laevis (African clawed frog)|
          Length = 214

 Score = 44.3 bits (103), Expect = 8e-04
 Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
 Frame = +1

Query: 400 FVHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHE 579
           ++ RL+ +   +D+   +   + +++ + V   F+ +TLL L V+ T T P +YE+Y+ +
Sbjct: 126 YIVRLFLV---DDLVDSLKLALLMWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQ 182

Query: 580 VDHLVAAGARDVRTHFAKMDS---GVLRK 657
           +DH V+     V++   K+ +   G L+K
Sbjct: 183 IDHYVSLVHSQVKSITEKIQAKLPGALKK 211



to top

>Q64548:RTN1_RAT Reticulon-1 - Rattus norvegicus (Rat)|
          Length = 777

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 27/90 (30%), Positives = 46/90 (51%)
 Frame = +1

Query: 403 VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
           + RL+ +    D  KF    V +++ + V   F+ LTLL + VV   T+P +Y +++ +V
Sbjct: 691 LRRLFLVQDLVDSLKF---AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQV 747

Query: 583 DHLVAAGARDVRTHFAKMDSGVLRKIPRGK 672
           D  +      VRTH   + + +  KIP  K
Sbjct: 748 DQYLGL----VRTHINTVVAKIQAKIPGAK 773



to top

>Q5IS59:RTN1_PANTR Reticulon-1 - Pan troglodytes (Chimpanzee)|
          Length = 776

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 10/227 (4%)
 Frame = +1

Query: 22   HTNTRMAMGGGSHLQGHRAPRLFGRERPVHAALGGREAADIILWRRPRXXXXXXXXXXXX 201
            H +     G G    G   P LF         L  ++A D++ WR  +            
Sbjct: 561  HQSPAATKGPGPLGPGAPPPLLF---------LNKQKAIDLLYWRDIKQTGIVFGSFLLL 611

Query: 202  XXXFEVAEYHFLTLACY---AAMIAMLTFFIWTNASAFMNLPVPRIP-------ETILSE 351
               F + ++  +++  Y   AA+ A ++F I+ +    +       P       E  LS+
Sbjct: 612  L--FSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQ 669

Query: 352  RTAKQVILGLHRRLTWFVHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVV 531
               ++    L   +   +  L  +   +D+   +   V +++ + V   F+ LTLL + V
Sbjct: 670  EQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAV 729

Query: 532  VCTMTVPALYERYEHEVDHLVAAGARDVRTHFAKMDSGVLRKIPRGK 672
            V   T+P +Y +++ ++D  +      VRTH   + + +  KIP  K
Sbjct: 730  VSMFTLPVVYVKHQAQIDQYLGL----VRTHINAVVAKIQAKIPGAK 772



to top

>Q8K0T0:RTN1_MOUSE Reticulon-1 - Mus musculus (Mouse)|
          Length = 780

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 27/90 (30%), Positives = 46/90 (51%)
 Frame = +1

Query: 403 VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
           + RL+ +    D  KF    V +++ + V   F+ LTLL + VV   T+P +Y +++ +V
Sbjct: 694 LRRLFLVQDLVDSLKF---AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQV 750

Query: 583 DHLVAAGARDVRTHFAKMDSGVLRKIPRGK 672
           D  +      VRTH   + + +  KIP  K
Sbjct: 751 DQYLGL----VRTHINTVVAKIQAKIPGAK 776



to top

>Q68EW1:RTN3B_XENLA Reticulon-3-B - Xenopus laevis (African clawed frog)|
          Length = 214

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
 Frame = +1

Query: 376 GLHRRLTWFVHRLYAIA---CGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMT 546
           GL   L    H L +I      ED+   +   + +++ + +   F+ +TLL L V+   T
Sbjct: 112 GLSSSLAHVNHALKSIVRLFLVEDLVDSLKLALLMWLMTYIGAVFNGITLLILGVLLAFT 171

Query: 547 VPALYERYEHEVDHLVAAGARDVRTHFAKMDS---GVLRK 657
            P +YE+Y+ ++DH V+     V++   K+ +   G L+K
Sbjct: 172 TPLVYEKYKVQIDHYVSLVHSQVKSITEKIQAKLPGALKK 211



to top

>Q16799:RTN1_HUMAN Reticulon-1 - Homo sapiens (Human)|
          Length = 776

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 26/90 (28%), Positives = 46/90 (51%)
 Frame = +1

Query: 403 VHRLYAIACGEDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEV 582
           + RL+ +    D  KF    V +++ + V   F+ LTLL + VV   T+P +Y +++ ++
Sbjct: 690 LRRLFLVQDLVDSLKF---AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQI 746

Query: 583 DHLVAAGARDVRTHFAKMDSGVLRKIPRGK 672
           D  +      VRTH   + + +  KIP  K
Sbjct: 747 DQYLGL----VRTHINAVVAKIQAKIPGAK 772



to top

>Q6RJR6:RTN3_RAT Reticulon-3 - Rattus norvegicus (Rat)|
          Length = 940

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 28/104 (26%), Positives = 53/104 (50%)
 Frame = +1

Query: 301  AFMNLPVPRIPETILSERTAKQVILGLHRRLTWFVHRLYAIACGEDVKKFIMTVVSLYIA 480
            A++++ +    E   S   A  V +    +L   + RL+ +   ED+   +   V +++ 
Sbjct: 822  AYLDVDITLSSEAFHSYMNAAMVHVNKALKL---IIRLFLV---EDLVDSLKLAVFMWLM 875

Query: 481  SVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
            + V   F+ +TLL L  +   +VP +YE+Y+ ++DH V   ARD
Sbjct: 876  TYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGI-ARD 918



to top

>O70622:RTN2_MOUSE Reticulon-2 - Mus musculus (Mouse)|
          Length = 471

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 27/91 (29%), Positives = 43/91 (47%)
 Frame = +1

Query: 433 EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
           ED+   +   +  YI + V   F+ LTL+ L VV   TVP LY +++ ++D  V      
Sbjct: 380 EDLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGL---- 435

Query: 613 VRTHFAKMDSGVLRKIPRGKGATTANNTVHG 705
           V    + + + +  KIP G G      +V G
Sbjct: 436 VTNQLSHIKAKIRAKIP-GTGTLAPTASVSG 465



to top

>Q9ES97:RTN3_MOUSE Reticulon-3 - Mus musculus (Mouse)|
          Length = 964

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 433  EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
            ED+   +   V +++ + V   F+ +TLL L  +   +VP +YE+Y+ ++DH V   ARD
Sbjct: 884  EDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGI-ARD 942



to top

>Q5RBL9:RTN3_PONPY Reticulon-3 - Pongo pygmaeus (Orangutan)|
          Length = 236

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 433 EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
           ED+   +   V +++ + V   F+ +TLL L  +   +VP +YE+Y+ ++DH V   ARD
Sbjct: 156 EDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGI-ARD 214



to top

>O95197:RTN3_HUMAN Reticulon-3 - Homo sapiens (Human)|
          Length = 1032

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 433  EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
            ED+   +   V +++ + V   F+ +TLL L  +   +VP +YE+Y+ ++DH V   ARD
Sbjct: 952  EDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGI-ARD 1010



to top

>Q08D83:RTN3_BOVIN Reticulon-3 - Bos taurus (Bovine)|
          Length = 256

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +1

Query: 433 EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
           ED+   +   V +++ + V   F+ +TLL L  +   ++P +YE+Y+ ++DH V   ARD
Sbjct: 176 EDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQIDHYVGI-ARD 234



to top

>Q04947:RTN1_YEAST Reticulon-like protein 1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 295

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 442 KKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAG 603
           K    T V+L++     + FS  T++++  + T T+P +Y  Y+HE+D  VA G
Sbjct: 125 KHTFKTAVALFLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDATVAQG 178



to top

>O75298:RTN2_HUMAN Reticulon-2 - Homo sapiens (Human)|
          Length = 545

 Score = 40.4 bits (93), Expect = 0.011
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +1

Query: 433 EDVKKFIMTVVSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLVAAGARD 612
           ED+   +   +  YI + V   F+ LTLL L V+   T+P LY +++ ++D  V      
Sbjct: 453 EDLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGL---- 508

Query: 613 VRTHFAKMDSGVLRKIPRGKGA 678
           V    + + + +  KIP G GA
Sbjct: 509 VTNQLSHIKAKIRAKIP-GTGA 529



to top

>P13698:PDGFA_XENLA Platelet-derived growth factor A chain precursor - Xenopus laevis|
           (African clawed frog)
          Length = 226

 Score = 34.3 bits (77), Expect = 0.81
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+S+KV K E  R +   +E+LVR++
Sbjct: 134 CTGCCNTSSVKCQPSRIHHRSVKVAKVEYVRKKPKLKEVLVRLE 177



to top

>Q13519:PNOC_HUMAN Nociceptin precursor [Contains: Neuropeptide 1; Nociceptin - Homo|
           sapiens (Human)
          Length = 176

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 671 KVPPQPT-TPCTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVR 823
           KV P P  TPCT  +AR+S    P    H +  + +  AS  QH RR   VR
Sbjct: 51  KVFPSPLWTPCTKVMARSSWQLSPAAPEHVAAALYQPRASEMQHLRRMPRVR 102



to top

>Q8AVK2:LN28B_XENLA Lin-28 homolog B - Xenopus laevis (African clawed frog)|
          Length = 252

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 660 PQGQRCHHSQQHRARVASLARQLIPSQQHVTTNQSRFRRKRPQGTN 797
           PQ ++CH+ Q     VA+   +++P  QH TT+Q R+  +    T+
Sbjct: 149 PQPKKCHYCQSTMHMVANCPHKIVP--QHPTTSQGRYEAEPQPSTS 192



to top

>Q83S00:FTSK_SHIFL DNA translocase ftsK - Shigella flexneri|
          Length = 1342

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 618 DALRQDGLRRAPEDPQGQRCHHSQQH----RARVASLARQLIPSQQHVTTNQSRFRRKRP 785
           DA++QD L R     Q QR     QH     A  A  A +   ++Q   T Q R+  ++P
Sbjct: 644 DAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQP 703

Query: 786 QGTN 797
            G N
Sbjct: 704 AGAN 707



to top

>P46889:FTSK_ECOLI DNA translocase ftsK - Escherichia coli|
          Length = 1329

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 618 DALRQDGLRRAPEDPQGQRCHHSQQH----RARVASLARQLIPSQQHVTTNQSRFRRKRP 785
           DA++QD L R     Q QR     QH     A  A  A +   ++Q   T Q R+  ++P
Sbjct: 644 DAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQP 703

Query: 786 QGTN 797
            G N
Sbjct: 704 AGAN 707



to top

>Q8X5H9:FTSK_ECO57 DNA translocase ftsK - Escherichia coli O157:H7|
          Length = 1342

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 618 DALRQDGLRRAPEDPQGQRCHHSQQH----RARVASLARQLIPSQQHVTTNQSRFRRKRP 785
           DA++QD L R     Q QR     QH     A  A  A +   ++Q   T Q R+  ++P
Sbjct: 644 DAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQP 703

Query: 786 QGTN 797
            G N
Sbjct: 704 AGAN 707



to top

>P28576:PDGFA_RAT Platelet-derived growth factor A chain precursor - Rattus|
           norvegicus (Rat)
          Length = 204

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+S+KV K E  R +   +E+ VR++
Sbjct: 129 CTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLE 172



to top

>P34007:PDGFA_RABIT Platelet-derived growth factor A chain precursor - Oryctolagus|
           cuniculus (Rabbit)
          Length = 213

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+S+KV K E  R +   +E+ VR++
Sbjct: 131 CTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLE 174



to top

>P20033:PDGFA_MOUSE Platelet-derived growth factor A chain precursor - Mus musculus|
           (Mouse)
          Length = 211

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+S+KV K E  R +   +E+ VR++
Sbjct: 129 CTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLE 172



to top

>P04085:PDGFA_HUMAN Platelet-derived growth factor A chain precursor - Homo sapiens|
           (Human)
          Length = 211

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+S+KV K E  R +   +E+ VR++
Sbjct: 129 CTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLE 172



to top

>Q8FJC7:FTSK_ECOL6 DNA translocase ftsK - Escherichia coli O6|
          Length = 1347

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 618 DALRQDGLRRAPEDPQGQRCHHSQQHRARV----ASLARQLIPSQQHVTTNQSRFRRKRP 785
           DA++QD L R     Q QR     QH   V    A  A +   ++Q   T Q R+  ++P
Sbjct: 657 DAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQP 716

Query: 786 QGTN 797
            G N
Sbjct: 717 AGAN 720



to top

>Q12443:RTN2_YEAST Reticulon-like protein 2 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 393

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 463 VSLYIASVVATCFSSLTLLYLVVVCTMTVPALYERYEHEVDHLV 594
           VSLY    +   FS  T+L +  +   TVP +Y+R +  +D  +
Sbjct: 142 VSLYFLHGLFAIFSMNTVLIMTTIFLYTVPLIYDRKQARIDRAI 185



to top

>Q2KJ15:PDGFA_BOVIN Platelet-derived growth factor A chain precursor - Bos taurus|
           (Bovine)
          Length = 211

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 698 CTGGIARTSTNPKPTTCYHQSIKVQKKEASRNQHARREMLVRVQ 829
           CTG    +S   +P+  +H+++KV K E  R +   +E+ VR++
Sbjct: 129 CTGCCNTSSVKCQPSRVHHRNVKVAKVEYFRKKAKLKEVQVRLE 172


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 147,038,675
Number of extensions: 3053505
Number of successful extensions: 11236
Number of sequences better than 10.0: 31
Number of HSP's gapped: 11218
Number of HSP's successfully gapped: 31
Length of query: 331
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 217
Effective length of database: 69,416,809
Effective search space: 15063447553
Effective search space used: 15063447553
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top