ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf39a20 |
|---|---|
| Clone Library Name | barley_pub |
>Q8UIF1:GLND_AGRT5 [Protein-PII] uridylyltransferase - Agrobacterium tumefaciens (strain| C58 / ATCC 33970) Length = 942 Score = 40.4 bits (93), Expect = 0.054 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDI 3058 F+++ VE DRPGLL D+ +IAD+++ + S T VI +F D+ Sbjct: 839 FTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDL 888
>Q8G312:GLND_BRUSU [Protein-PII] uridylyltransferase - Brucella suis| Length = 934 Score = 38.9 bits (89), Expect = 0.16 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDISCSSTEILYL 3088 F+++ VE DRPGLL +L +I+D+++ + S T VI SF D+ + Sbjct: 846 FTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHK-----I 900 Query: 3089 VGATSQGKIPCQL 3127 AT QG I +L Sbjct: 901 SNATRQGNIKRKL 913
>Q8YES3:GLND_BRUME [Protein-PII] uridylyltransferase - Brucella melitensis| Length = 934 Score = 38.9 bits (89), Expect = 0.16 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDISCSSTEILYL 3088 F+++ VE DRPGLL +L +I+D+++ + S T VI SF D+ + Sbjct: 846 FTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHK-----I 900 Query: 3089 VGATSQGKIPCQL 3127 AT QG I +L Sbjct: 901 SNATRQGNIKRKL 913
>Q57FN0:GLND_BRUAB [Protein-PII] uridylyltransferase - Brucella abortus| Length = 934 Score = 38.9 bits (89), Expect = 0.16 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDISCSSTEILYL 3088 F+++ VE DRPGLL +L +I+D+++ + S T VI SF D+ + Sbjct: 846 FTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHK-----I 900 Query: 3089 VGATSQGKIPCQL 3127 AT QG I +L Sbjct: 901 SNATRQGNIKRKL 913
>Q2YNZ1:GLND_BRUA2 [Protein-PII] uridylyltransferase - Brucella abortus (strain 2308)| Length = 934 Score = 38.9 bits (89), Expect = 0.16 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDISCSSTEILYL 3088 F+++ VE DRPGLL +L +I+D+++ + S T VI SF D+ + Sbjct: 846 FTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHK-----I 900 Query: 3089 VGATSQGKIPCQL 3127 AT QG I +L Sbjct: 901 SNATRQGNIKRKL 913
>Q53245:GLND_RHITR [Protein-PII] uridylyltransferase - Rhizobium tropici| Length = 948 Score = 38.1 bits (87), Expect = 0.27 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDI 3058 F+++ VE DRPGLL ++ +++D+++ +QS T VI +F D+ Sbjct: 838 FTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADL 887
>Q9RAE4:GLND_RHILV [Protein-PII] uridylyltransferase - Rhizobium leguminosarum bv.| viciae Length = 944 Score = 38.1 bits (87), Expect = 0.27 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDI 3058 F+++ VE DRPGLL ++ +++D+++ +QS T VI +F D+ Sbjct: 837 FTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDL 886
>Q98C27:GLND_RHILO [Protein-PII] uridylyltransferase - Rhizobium loti (Mesorhizobium| loti) Length = 933 Score = 37.0 bits (84), Expect = 0.60 Identities = 23/81 (28%), Positives = 42/81 (51%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDISCSSTEILYL 3088 FS++ VE DRPGLL ++ ++D+++ + S T VI +F D++ + Sbjct: 846 FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPAR 905 Query: 3089 VGATSQGKIPCQLPGQAINQG 3151 + AT + ++ L G A +G Sbjct: 906 I-ATIRNRLMATLEGIAPERG 925
>P16753:VP40_HCMVA Capsid protein P40 [Contains: Assemblin - Human cytomegalovirus| (strain AD169) (HHV-5) (Human herpesvirus 5) Length = 708 Score = 34.7 bits (78), Expect = 3.0 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Frame = +1 Query: 199 WGRRFQKWPSP*PQ--GPSVPAPAYFRRR--PGTISLPGGG 309 WGRR++ PS P P P+PAY+RRR PG + P G Sbjct: 444 WGRRYEPAPSLHPSYPVPPPPSPAYYRRRDSPGGMDEPPSG 484
>Q3J5H6:GLND_RHOS4 [Protein-PII] uridylyltransferase - Rhodobacter sphaeroides (strain| ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) Length = 930 Score = 34.7 bits (78), Expect = 3.0 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDI 3058 ++++ V++ DRPGLL DL + +A NI + S T V+ SF D+ Sbjct: 850 YTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDM 899
>Q5LWE5:GLND_SILPO [Protein-PII] uridylyltransferase - Silicibacter pomeroyi| Length = 908 Score = 33.5 bits (75), Expect = 6.7 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +2 Query: 2909 FSLLVVESADRPGLLVDLVKIIADINITVQSGEFDTEVTPVIWSFTFIDI 3058 ++++ V++ DRPGLL DL + +A N+ + + T V+ SF D+ Sbjct: 827 YTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDM 876
>Q9Z968:RF1_CHLPN Peptide chain release factor 1 - Chlamydia pneumoniae (Chlamydophila| pneumoniae) Length = 357 Score = 33.1 bits (74), Expect = 8.7 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -3 Query: 1692 GTHSIKKIPKTVTQGYFHNSCIRI*VL 1612 GTH ++++P+T TQG H S I I VL Sbjct: 179 GTHRVQRVPETETQGRVHTSAITIAVL 205 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 601,830,050 Number of extensions: 12656172 Number of successful extensions: 29183 Number of sequences better than 10.0: 12 Number of HSP's gapped: 28985 Number of HSP's successfully gapped: 12 Length of query: 1220 Length of database: 100,686,439 Length adjustment: 125 Effective length of query: 1095 Effective length of database: 66,399,564 Effective search space: 72707522580 Effective search space used: 72707522580 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
