ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf30d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT831886.1| Oryza sativa (indica cultivar-group) cDNA clone:... 702 0.0
2ref|NM_001050450.1| Oryza sativa (japonica cultivar-group) Os01g... 694 0.0
3dbj|AK073996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 694 0.0
4dbj|AK061158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 694 0.0
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 174 5e-40
6dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 174 5e-40
7gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complet... 46 0.33
8dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 46 0.33
9gb|U76670.1|ATU76670 Arabidopsis thaliana recA-like protein (AtD... 46 0.33
10dbj|D45415.1|ATHARLIM15 Arabidopsis thaliana ArLIM15 gene for re... 46 0.33
11ref|NM_202181.1| Arabidopsis thaliana unknown protein (AT1G25420... 44 1.3
12ref|NM_202182.1| Arabidopsis thaliana unknown protein (AT1G25420... 44 1.3
13ref|NM_102353.2| Arabidopsis thaliana unknown protein (AT1G25420... 44 1.3
14gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Can... 44 1.3
15gb|AY143866.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, comp... 44 1.3
16gb|AY095990.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, comp... 44 1.3
17gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 44 1.3
18gb|AY088569.1| Arabidopsis thaliana clone 7917 mRNA, complete se... 44 1.3
19emb|BX817810.1|CNS0AB5Q Arabidopsis thaliana Full-length cDNA Co... 44 1.3
20gb|EF040113.1| Synthetic construct Bacillus anthracis clone FLH2... 42 5.2
21gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete ge... 42 5.2
22ref|NM_001067646.1| Oryza sativa (japonica cultivar-group) Os08g... 42 5.2
23gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 5.2
24emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 42 5.2
25gb|AY622606.1| Candida dubliniensis MTL alpha 2, OPB alpha, PIK ... 42 5.2
26gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 5.2
27gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 5.2
28gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 5.2
29gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome... 42 5.2
30gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosom... 42 5.2
31gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosom... 42 5.2
32gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome... 42 5.2
33gb|AC122271.4| Mus musculus BAC clone RP23-222D3 from 18, comple... 42 5.2
34gb|CP000001.1| Bacillus cereus E33L, complete genome 42 5.2
35dbj|AK150038.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 42 5.2
36ref|NM_172275.1| Mus musculus TRAF type zinc finger domain conta... 42 5.2
37gb|BC023072.1| Mus musculus TRAF type zinc finger domain contain... 42 5.2
38gb|BC021421.1| Mus musculus TRAF type zinc finger domain contain... 42 5.2
39dbj|AK003586.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 42 5.2
40dbj|AK042299.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 5.2
41gb|AC117524.2| Homo sapiens chromosome 5 clone RP11-114E19, comp... 42 5.2
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
44gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 42 5.2
45gb|AC018754.6| Homo sapiens chromosome 5 clone CTC-428H11, compl... 42 5.2
46gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 42 5.2
47dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
48dbj|AK212088.1| Mus musculus cDNA, clone:Y2G0123N06, strand:minu... 42 5.2
49dbj|AK211451.1| Mus musculus cDNA, clone:Y2G0121M21, strand:minu... 42 5.2
50dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
51dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
52dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.2
53dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.2
54gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 5.2

>emb|CT831886.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122K24, full
           insert sequence
          Length = 1170
 Score =  702 bits (354), Expect = 0.0
 Identities = 608/692 (87%), Gaps = 3/692 (0%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 138
           ||||||||||||||||||||||||||||||||||| ||   ||||| |||||||||||||
Sbjct: 64  cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 120

                                                                       
Query: 139 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 198
           ||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 121 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 180

                                                                       
Query: 199 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 258
           | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || |
Sbjct: 181 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 240

                                                                       
Query: 259 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 318
           |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 241 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 300

                                                                       
Query: 319 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 378
           ||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||
Sbjct: 301 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 360

                                                                       
Query: 379 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 438
           |||||||| | || || ||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 361 ccttagaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 420

                                                                       
Query: 439 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 498
           |||||||||| ||||||||||||| |||||| |||||||| ||||| || || |||||||
Sbjct: 421 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 480

                                                                       
Query: 499 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 558
           |||| |||||||||||||| |||||  | ||||||||||| || ||||| |||||||| |
Sbjct: 481 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 540

                                                                       
Query: 559 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 618
           |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 541 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 600

                                                                       
Query: 619 acaatcttgattgggattcatctaataccgaagcagaattcaataagaaatacgaagatc 678
           |    ||||| ||||| ||||| ||||| ||||||||  | || ||||||||||||||||
Sbjct: 601 atggccttgaatgggactcatcgaatactgaagcagagcttaacaagaaatacgaagatc 660

                                                                       
Query: 679 tgctggacgattccggatcatcagtccgccaaggccaaacacctaaaattgagagctctc 738
           ||||||| |  || ||||| ||||  ||||| |||||   ||||| ||| |||| |||||
Sbjct: 661 tgctggatggatcaggatcctcagcacgccagggccagttacctataatcgagaactctc 720

                                           
Query: 739 caggctcttccatttccagagataagccatcg 770
           |||   |||||||||||||||||| |||||||
Sbjct: 721 cagttgcttccatttccagagatatgccatcg 752



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 927 tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
           ||||| ||||| || ||||| |||||||||||||||| ||| |||| ||| |||||||||
Sbjct: 918 tcgtcggacgttcttgaaaaagcccgagctgccattgctgctgccaaccgcgcctccgcc 977

             
Query: 987 gc 988
           ||
Sbjct: 978 gc 979



to top

>ref|NM_001050450.1| Oryza sativa (japonica cultivar-group) Os01g0687700 (Os01g0687700)
           mRNA, complete cds
          Length = 1233

 Score =  694 bits (350), Expect = 0.0
 Identities = 607/692 (87%), Gaps = 3/692 (0%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 138
           ||||||||||||||||||||||||||||||||||| ||   ||||| |||||||||||||
Sbjct: 73  cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 129

                                                                       
Query: 139 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 198
           ||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 130 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 189

                                                                       
Query: 199 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 258
           | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || |
Sbjct: 190 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 249

                                                                       
Query: 259 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 318
           |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 250 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 309

                                                                       
Query: 319 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 378
           ||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||
Sbjct: 310 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 369

                                                                       
Query: 379 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 438
           |||| ||| | || || ||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 370 ccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 429

                                                                       
Query: 439 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 498
           |||||||||| ||||||||||||| |||||| |||||||| ||||| || || |||||||
Sbjct: 430 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 489

                                                                       
Query: 499 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 558
           |||| |||||||||||||| |||||  | ||||||||||| || ||||| |||||||| |
Sbjct: 490 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 549

                                                                       
Query: 559 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 618
           |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 550 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 609

                                                                       
Query: 619 acaatcttgattgggattcatctaataccgaagcagaattcaataagaaatacgaagatc 678
           |    ||||| ||||| ||||| ||||| ||||||||  | || ||||||||||||||||
Sbjct: 610 atggccttgaatgggactcatcgaatactgaagcagagcttaacaagaaatacgaagatc 669

                                                                       
Query: 679 tgctggacgattccggatcatcagtccgccaaggccaaacacctaaaattgagagctctc 738
           ||||||| |  || ||||| ||||  ||||| |||||   ||||| ||| |||| |||||
Sbjct: 670 tgctggatggatcaggatcctcagcacgccagggccagttacctataatcgagaactctc 729

                                           
Query: 739 caggctcttccatttccagagataagccatcg 770
           |||   |||||||||||||||||| |||||||
Sbjct: 730 cagttgcttccatttccagagatatgccatcg 761



 Score = 67.9 bits (34), Expect = 9e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 927 tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
           ||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |||||||||
Sbjct: 927 tcgtcggacgttcttgaaaaagcccgagctgccattgctgcagccaaccgcgcctccgcc 986

             
Query: 987 gc 988
           ||
Sbjct: 987 gc 988



to top

>dbj|AK073996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E20, full
           insert sequence
          Length = 1236

 Score =  694 bits (350), Expect = 0.0
 Identities = 607/692 (87%), Gaps = 3/692 (0%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 138
           ||||||||||||||||||||||||||||||||||| ||   ||||| |||||||||||||
Sbjct: 75  cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 131

                                                                       
Query: 139 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 198
           ||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 132 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 191

                                                                       
Query: 199 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 258
           | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || |
Sbjct: 192 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 251

                                                                       
Query: 259 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 318
           |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 252 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 311

                                                                       
Query: 319 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 378
           ||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||
Sbjct: 312 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 371

                                                                       
Query: 379 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 438
           |||| ||| | || || ||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 372 ccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 431

                                                                       
Query: 439 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 498
           |||||||||| ||||||||||||| |||||| |||||||| ||||| || || |||||||
Sbjct: 432 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 491

                                                                       
Query: 499 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 558
           |||| |||||||||||||| |||||  | ||||||||||| || ||||| |||||||| |
Sbjct: 492 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 551

                                                                       
Query: 559 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 618
           |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 552 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 611

                                                                       
Query: 619 acaatcttgattgggattcatctaataccgaagcagaattcaataagaaatacgaagatc 678
           |    ||||| ||||| ||||| ||||| ||||||||  | || ||||||||||||||||
Sbjct: 612 atggccttgaatgggactcatcgaatactgaagcagagcttaacaagaaatacgaagatc 671

                                                                       
Query: 679 tgctggacgattccggatcatcagtccgccaaggccaaacacctaaaattgagagctctc 738
           ||||||| |  || ||||| ||||  ||||| |||||   ||||| ||| |||| |||||
Sbjct: 672 tgctggatggatcaggatcctcagcacgccagggccagttacctataatcgagaactctc 731

                                           
Query: 739 caggctcttccatttccagagataagccatcg 770
           |||   |||||||||||||||||| |||||||
Sbjct: 732 cagttgcttccatttccagagatatgccatcg 763



 Score = 67.9 bits (34), Expect = 9e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 927 tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
           ||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |||||||||
Sbjct: 929 tcgtcggacgttcttgaaaaagcccgagctgccattgctgcagccaaccgcgcctccgcc 988

             
Query: 987 gc 988
           ||
Sbjct: 989 gc 990



to top

>dbj|AK061158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H01, full
           insert sequence
          Length = 1162

 Score =  694 bits (350), Expect = 0.0
 Identities = 607/692 (87%), Gaps = 3/692 (0%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgatgtcgtccctcaactcgctcttcaaccgctcctcccccttcggcaccaaatgcaaaa 138
           ||||||||||||||||||||||||||||||||||| ||   ||||| |||||||||||||
Sbjct: 72  cgatgtcgtccctcaactcgctcttcaaccgctccacc---ttcggtaccaaatgcaaaa 128

                                                                       
Query: 139 catgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggagatgcaac 198
           ||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 129 catgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagttgcagc 188

                                                                       
Query: 199 tgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtctattgcga 258
           | |||||||||||||||||||||||||| ||||||||||| |||||||| || || || |
Sbjct: 189 taataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcgatagcaa 248

                                                                       
Query: 259 ggattcgggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttg 318
           |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 249 ggattcgggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttg 308

                                                                       
Query: 319 agcttttctgcgaatttgttctggcacgagtccctattgttgaggcccaaaaggaatgcc 378
           ||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||
Sbjct: 309 agcttttctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaaggaatgcc 368

                                                                       
Query: 379 ccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatgctcagact 438
           |||| ||| | || || ||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 369 ccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatgttcagact 428

                                                                       
Query: 439 tgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaagagtttgttg 498
           |||||||||| ||||||||||||| |||||| |||||||| ||||| || || |||||||
Sbjct: 429 tgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaaggaatttgttg 488

                                                                       
Query: 499 ctgctgctatggaattgcgccctgattgtggtgttaatcgcactataattgagaagcttt 558
           |||| |||||||||||||| |||||  | ||||||||||| || ||||| |||||||| |
Sbjct: 489 ctgcagctatggaattgcgtcctgacagcggtgttaatcgtacaataatcgagaagctct 548

                                                                       
Query: 559 cagttaaggctccatcagcggaatcaaagttgaaggttttgaaagctattgctcatgagt 618
           |||| ||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 549 cagtgaaggccccatcagctgaatcaaagctgaaggttctgaaagctattgctcaagagt 608

                                                                       
Query: 619 acaatcttgattgggattcatctaataccgaagcagaattcaataagaaatacgaagatc 678
           |    ||||| ||||| ||||| ||||| ||||||||  | || ||||||||||||||||
Sbjct: 609 atggccttgaatgggactcatcgaatactgaagcagagcttaacaagaaatacgaagatc 668

                                                                       
Query: 679 tgctggacgattccggatcatcagtccgccaaggccaaacacctaaaattgagagctctc 738
           ||||||| |  || ||||| ||||  ||||| |||||   ||||| ||| |||| |||||
Sbjct: 669 tgctggatggatcaggatcctcagcacgccagggccagttacctataatcgagaactctc 728

                                           
Query: 739 caggctcttccatttccagagataagccatcg 770
           |||   |||||||||||||||||| |||||||
Sbjct: 729 cagttgcttccatttccagagatatgccatcg 760



 Score = 67.9 bits (34), Expect = 9e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 927 tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
           ||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |||||||||
Sbjct: 926 tcgtcggacgttcttgaaaaagcccgagctgccattgctgcagccaaccgcgcctccgcc 985

             
Query: 987 gc 988
           ||
Sbjct: 986 gc 987



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  174 bits (88), Expect = 5e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                            
Query: 371      ggaatgccccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatg 430
                |||||||||||| ||| | || || ||||||||||||||||| ||||||||||| |||||
Sbjct: 28365945 ggaatgccccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatg 28365886

                                                                            
Query: 431      ctcagacttgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaaga 490
                 ||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || ||
Sbjct: 28365885 ttcagacttgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaagga 28365826

                                                                
Query: 491      gtttgttgctgctgctatggaattgcgccctgattgtggtgttaatcg 538
                 ||||||||||| |||||||||||||| |||||  | |||||||||||
Sbjct: 28365825 atttgttgctgcagctatggaattgcgtcctgacagcggtgttaatcg 28365778



 Score =  167 bits (84), Expect = 1e-37
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                            
Query: 133      gcaaaacatgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggaga 192
                ||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| 
Sbjct: 28366932 gcaaaacatgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagt 28366873

                                                                            
Query: 193      tgcaactgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtcta 252
                |||| || |||||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct: 28366872 tgcagctaataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcga 28366813

                                
Query: 253      ttgcgaggattcgggt 268
                | || |||||||||||
Sbjct: 28366812 tagcaaggattcgggt 28366797



 Score =  155 bits (78), Expect = 5e-34
 Identities = 99/106 (93%)
 Strand = Plus / Minus

                                                                            
Query: 266      ggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttgagctttt 325
                ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28366177 ggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttgagctttt 28366118

                                                              
Query: 326      ctgcgaatttgttctggcacgagtccctattgttgaggcccaaaag 371
                |||||||||||| |||||| | |||||||||||||||| |||||||
Sbjct: 28366117 ctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaag 28366072



 Score =  123 bits (62), Expect = 2e-24
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                            
Query: 543      ataattgagaagctttcagttaaggctccatcagcggaatcaaagttgaaggttttgaaa 602
                ||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||| |||||
Sbjct: 28365645 ataatcgagaagctctcagtgaaggccccatcagctgaatcaaagctgaaggttctgaaa 28365586

                                                                            
Query: 603      gctattgctcatgagtacaatcttgattgggattcatctaataccgaagcagaattcaat 662
                ||||||||||| |||||    ||||| ||||| ||||| ||||| ||||||||  | || 
Sbjct: 28365585 gctattgctcaagagtatggccttgaatgggactcatcgaatactgaagcagagcttaac 28365526

                                      
Query: 663      aagaaatacgaagatctgctgg 684
                ||||||||||||||||||||||
Sbjct: 28365525 aagaaatacgaagatctgctgg 28365504



 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                                   
Query: 79       cgatgtcgtccctcaactcgctcttcaaccgctcc 113
                |||||||||||||||||||||||||||||||||||
Sbjct: 28367693 cgatgtcgtccctcaactcgctcttcaaccgctcc 28367659



 Score = 67.9 bits (34), Expect = 9e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 927      tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
                ||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |||||||||
Sbjct: 28364483 tcgtcggacgttcttgaaaaagcccgagctgccattgctgcagccaaccgcgcctccgcc 28364424

                  
Query: 987      gc 988
                ||
Sbjct: 28364423 gc 28364422



 Score = 48.1 bits (24), Expect = 0.084
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 719      acctaaaattgagagctctccaggctcttccatttccagagataagccatcg 770
                ||||| ||| |||| ||||||||   |||||||||||||||||| |||||||
Sbjct: 28364700 acctataatcgagaactctccagttgcttccatttccagagatatgccatcg 28364649



to top

>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score =  174 bits (88), Expect = 5e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                         
Query: 371   ggaatgccccttagaattgcgagaggcaatagctagtataatctttgcatcaggaagatg 430
             |||||||||||| ||| | || || ||||||||||||||||| ||||||||||| |||||
Sbjct: 81045 ggaatgccccttcgaactacgggaagcaatagctagtataatatttgcatcagggagatg 80986

                                                                         
Query: 431   ctcagacttgcctgagctgatgcatctccgtaatttgtttaccaccaagtatgggaaaga 490
              ||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || ||
Sbjct: 80985 ttcagacttgcctgagctaatgcatctccgtactttgttcaccaccaaatatggcaagga 80926

                                                             
Query: 491   gtttgttgctgctgctatggaattgcgccctgattgtggtgttaatcg 538
              ||||||||||| |||||||||||||| |||||  | |||||||||||
Sbjct: 80925 atttgttgctgcagctatggaattgcgtcctgacagcggtgttaatcg 80878



 Score =  167 bits (84), Expect = 1e-37
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                         
Query: 133   gcaaaacatgcctgaatttgatcatttcgaggatcaagctgctgcgcaataggagggaga 192
             ||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| 
Sbjct: 82032 gcaaaacatgcttgaatttagtcatttcgaggatcaagctgctgcgcaacaggagggagt 81973

                                                                         
Query: 193   tgcaactgataaatatgcgcaaagagatggttcaatatcttcagacgggccaggagtcta 252
             |||| || |||||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct: 81972 tgcagctaataaatatgcgcaaagagatggttcagtatcttcagacaggccaggaatcga 81913

                             
Query: 253   ttgcgaggattcgggt 268
             | || |||||||||||
Sbjct: 81912 tagcaaggattcgggt 81897



 Score =  155 bits (78), Expect = 5e-34
 Identities = 99/106 (93%)
 Strand = Plus / Minus

                                                                         
Query: 266   ggtggagcatattattcgggagcaaaatatattggctgcctatgagattgttgagctttt 325
             ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 81277 ggtggagcacattattcgagagcaaaatatattggctgcatatgagattgttgagctttt 81218

                                                           
Query: 326   ctgcgaatttgttctggcacgagtccctattgttgaggcccaaaag 371
             |||||||||||| |||||| | |||||||||||||||| |||||||
Sbjct: 81217 ctgcgaatttgtgctggcaagggtccctattgttgaggtccaaaag 81172



 Score =  123 bits (62), Expect = 2e-24
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                         
Query: 543   ataattgagaagctttcagttaaggctccatcagcggaatcaaagttgaaggttttgaaa 602
             ||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||| |||||
Sbjct: 80745 ataatcgagaagctctcagtgaaggccccatcagctgaatcaaagctgaaggttctgaaa 80686

                                                                         
Query: 603   gctattgctcatgagtacaatcttgattgggattcatctaataccgaagcagaattcaat 662
             ||||||||||| |||||    ||||| ||||| ||||| ||||| ||||||||  | || 
Sbjct: 80685 gctattgctcaagagtatggccttgaatgggactcatcgaatactgaagcagagcttaac 80626

                                   
Query: 663   aagaaatacgaagatctgctgg 684
             ||||||||||||||||||||||
Sbjct: 80625 aagaaatacgaagatctgctgg 80604



 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                                
Query: 79    cgatgtcgtccctcaactcgctcttcaaccgctcc 113
             |||||||||||||||||||||||||||||||||||
Sbjct: 82793 cgatgtcgtccctcaactcgctcttcaaccgctcc 82759



 Score = 67.9 bits (34), Expect = 9e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 927   tcgtcagacgtgctagaaaaggcccgagctgccattgttgcagccacccgtgcctccgcc 986
             ||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |||||||||
Sbjct: 79583 tcgtcggacgttcttgaaaaagcccgagctgccattgctgcagccaaccgcgcctccgcc 79524

               
Query: 987   gc 988
             ||
Sbjct: 79523 gc 79522



 Score = 48.1 bits (24), Expect = 0.084
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 719   acctaaaattgagagctctccaggctcttccatttccagagataagccatcg 770
             ||||| ||| |||| ||||||||   |||||||||||||||||| |||||||
Sbjct: 79800 acctataatcgagaactctccagttgcttccatttccagagatatgccatcg 79749



to top

>gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complete sequence
          Length = 109843

 Score = 46.1 bits (23), Expect = 0.33
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 426   agatgctcagacttgcctgagct 448
             |||||||||||||||||||||||
Sbjct: 90543 agatgctcagacttgcctgagct 90565



to top

>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5
          Length = 71327

 Score = 46.1 bits (23), Expect = 0.33
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 786   gacacaagcaaaaataaaactcccgag 812
             ||||||||||||||||||| |||||||
Sbjct: 12000 gacacaagcaaaaataaaagtcccgag 12026



to top

>gb|U76670.1|ATU76670 Arabidopsis thaliana recA-like protein (AtDMC1) gene, complete cds
          Length = 8017

 Score = 46.1 bits (23), Expect = 0.33
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 786  gacacaagcaaaaataaaactcccgag 812
            ||||||||||||||||||| |||||||
Sbjct: 5452 gacacaagcaaaaataaaagtcccgag 5426



to top

>dbj|D45415.1|ATHARLIM15 Arabidopsis thaliana ArLIM15 gene for recA-like protein, complete cds
            (exon1-15)
          Length = 5135

 Score = 46.1 bits (23), Expect = 0.33
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 786  gacacaagcaaaaataaaactcccgag 812
            ||||||||||||||||||| |||||||
Sbjct: 2100 gacacaagcaaaaataaaagtcccgag 2074



to top

>ref|NM_202181.1| Arabidopsis thaliana unknown protein (AT1G25420) mRNA, complete cds
          Length = 1421

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 705 gattctggtgtcaatcgtactatcattgagaagctttc 742



to top

>ref|NM_202182.1| Arabidopsis thaliana unknown protein (AT1G25420) mRNA, complete cds
          Length = 1299

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 558 gattctggtgtcaatcgtactatcattgagaagctttc 595



to top

>ref|NM_102353.2| Arabidopsis thaliana unknown protein (AT1G25420) mRNA, complete cds
          Length = 1305

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 521 gattctggtgtcaatcgtactatcattgagaagctttc 558



to top

>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 250421

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 1001   ggcagaacttgttaacaaggttaaag 1026
              ||||||||||||||| ||||||||||
Sbjct: 203164 ggcagaacttgttaataaggttaaag 203139



to top

>gb|AY143866.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds
          Length = 972

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 439 gattctggtgtcaatcgtactatcattgagaagctttc 476



to top

>gb|AY095990.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds
          Length = 1082

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 475 gattctggtgtcaatcgtactatcattgagaagctttc 512



to top

>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1001   ggcagaacttgttaacaaggttaaag 1026
              ||||||||||||||| ||||||||||
Sbjct: 192450 ggcagaacttgttaataaggttaaag 192475



to top

>gb|AY088569.1| Arabidopsis thaliana clone 7917 mRNA, complete sequence
          Length = 1306

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 521 gattctggtgtcaatcgtactatcattgagaagctttc 558



to top

>emb|BX817810.1|CNS0AB5Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL43ZA02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1296

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 522 gattgtggtgttaatcgcactataattgagaagctttc 559
           |||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 555 gattctggtgtcaatcgtactatcattgagaagctttc 592



to top

>gb|EF040113.1| Synthetic construct Bacillus anthracis clone FLH247258.01L BA1632
           gene, complete sequence
          Length = 294

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 266 ggtggagcatattattcgggagcaaaatatatt 298
           |||||| |||||||||| | |||||||||||||
Sbjct: 213 ggtggaacatattattccgaagcaaaatatatt 245



to top

>gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete genome
          Length = 5257091

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1595955 ggtggaacatattattccgaagcaaaatatatt 1595987



to top

>ref|NM_001067646.1| Oryza sativa (japonica cultivar-group) Os08g0175200 (Os08g0175200)
           mRNA, complete cds
          Length = 2089

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 483 gggaaagagtttgttgctgctgcta 507
           |||||||||||||||||||| ||||
Sbjct: 519 gggaaagagtttgttgctgcagcta 543



to top

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 101    cttcaaccgctcctcccccttcggcacca 129
              ||||| ||||||||| |||||||||||||
Sbjct: 190226 cttcacccgctcctcgcccttcggcacca 190198



to top

>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1096   atgtatctttcattgcatgac 1116
              |||||||||||||||||||||
Sbjct: 421230 atgtatctttcattgcatgac 421250



to top

>gb|AY622606.1| Candida dubliniensis MTL alpha 2, OPB alpha, PIK alpha, and MTL alpha
            1 genes, complete cds; and PAP alpha gene, partial cds
          Length = 8593

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1017 aaggttaaagttacaactcaatgat 1041
            ||||||| |||||||||||||||||
Sbjct: 6550 aaggttacagttacaactcaatgat 6574



to top

>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1572794 ggtggaacatattattccgaagcaaaatatatt 1572826



to top

>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1546644 ggtggaacatattattccgaagcaaaatatatt 1546676



to top

>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1546598 ggtggaacatattattccgaagcaaaatatatt 1546630



to top

>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence
          Length = 187269

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 946   aggcccgagctgccattgttg 966
             |||||||||||||||||||||
Sbjct: 37661 aggcccgagctgccattgttg 37681



to top

>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence
          Length = 208499

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 734   ctctccaggctcttccatttccaga 758
             ||||||||||||| |||||||||||
Sbjct: 97427 ctctccaggctctgccatttccaga 97403



to top

>gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosome 5, complete
            sequence
          Length = 140936

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 946  aggcccgagctgccattgttg 966
            |||||||||||||||||||||
Sbjct: 5313 aggcccgagctgccattgttg 5293



to top

>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence
          Length = 192062

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 710    aggccaaacacctaaaattga 730
              |||||||||||||||||||||
Sbjct: 123102 aggccaaacacctaaaattga 123122



to top

>gb|AC122271.4| Mus musculus BAC clone RP23-222D3 from 18, complete sequence
          Length = 199493

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 487   aagagtttgttgctgctgctatgga 511
             ||||| |||||||||||||||||||
Sbjct: 71715 aagagcttgttgctgctgctatgga 71739



to top

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1571413 ggtggaacatattattccgaagcaaaatatatt 1571445



to top

>dbj|AK150038.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:G530123D08 product:FLN29 gene product,
            full insert sequence
          Length = 2447

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 946  aggcccgagctgccattgttg 966
            |||||||||||||||||||||
Sbjct: 2019 aggcccgagctgccattgttg 2039



to top

>ref|NM_172275.1| Mus musculus TRAF type zinc finger domain containing 1 (Trafd1), mRNA
 gb|BC038396.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA
            clone MGC:18969 IMAGE:3987227), complete cds
          Length = 2449

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 946  aggcccgagctgccattgttg 966
            |||||||||||||||||||||
Sbjct: 1994 aggcccgagctgccattgttg 2014



to top

>gb|BC023072.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA
            clone IMAGE:5357477), with apparent retained intron
          Length = 2903

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 946  aggcccgagctgccattgttg 966
            |||||||||||||||||||||
Sbjct: 2454 aggcccgagctgccattgttg 2474



to top

>gb|BC021421.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA
           clone IMAGE:5012211), containing frame-shift errors
          Length = 1271

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 946 aggcccgagctgccattgttg 966
           |||||||||||||||||||||
Sbjct: 794 aggcccgagctgccattgttg 814



to top

>dbj|AK003586.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110008K06 product:hypothetical
           protein, full insert sequence
          Length = 933

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 946 aggcccgagctgccattgttg 966
           |||||||||||||||||||||
Sbjct: 503 aggcccgagctgccattgttg 523



to top

>dbj|AK042299.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630079M19 product:hypothetical protein,
           full insert sequence
          Length = 1124

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 946 aggcccgagctgccattgttg 966
           |||||||||||||||||||||
Sbjct: 696 aggcccgagctgccattgttg 716



to top

>gb|AC117524.2| Homo sapiens chromosome 5 clone RP11-114E19, complete sequence
          Length = 79262

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   cggcaccaaatgcaaaacatg 142
             |||||||||||||||||||||
Sbjct: 19781 cggcaccaaatgcaaaacatg 19761



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 483     gggaaagagtttgttgctgctgcta 507
               |||||||||||||||||||| ||||
Sbjct: 4381158 gggaaagagtttgttgctgcagcta 4381134



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 70       cgccactgacgatgtcgtccc 90
                |||||||||||||||||||||
Sbjct: 25504502 cgccactgacgatgtcgtccc 25504522



to top

>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 838   caagaacatatgctgccacca 858
             |||||||||||||||||||||
Sbjct: 40978 caagaacatatgctgccacca 40958



to top

>gb|AC018754.6| Homo sapiens chromosome 5 clone CTC-428H11, complete sequence
          Length = 172056

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   cggcaccaaatgcaaaacatg 142
             |||||||||||||||||||||
Sbjct: 25590 cggcaccaaatgcaaaacatg 25610



to top

>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 838    caagaacatatgctgccacca 858
              |||||||||||||||||||||
Sbjct: 128110 caagaacatatgctgccacca 128090



to top

>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0054L03
          Length = 183623

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 483    gggaaagagtttgttgctgctgcta 507
              |||||||||||||||||||| ||||
Sbjct: 143952 gggaaagagtttgttgctgcagcta 143928



to top

>dbj|AK212088.1| Mus musculus cDNA, clone:Y2G0123N06, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000042312, based on BLAT search
          Length = 408

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 946 aggcccgagctgccattgttg 966
           |||||||||||||||||||||
Sbjct: 148 aggcccgagctgccattgttg 168



to top

>dbj|AK211451.1| Mus musculus cDNA, clone:Y2G0121M21, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000042312, based on BLAT search
          Length = 405

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 946 aggcccgagctgccattgttg 966
           |||||||||||||||||||||
Sbjct: 144 aggcccgagctgccattgttg 164



to top

>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 483   gggaaagagtttgttgctgctgcta 507
             |||||||||||||||||||| ||||
Sbjct: 28334 gggaaagagtttgttgctgcagcta 28310



to top

>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0560B08
          Length = 128098

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    cgccactgacgatgtcgtccc 90
             |||||||||||||||||||||
Sbjct: 41772 cgccactgacgatgtcgtccc 41792



to top

>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0552F09
          Length = 134659

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     cgccactgacgatgtcgtccc 90
              |||||||||||||||||||||
Sbjct: 128219 cgccactgacgatgtcgtccc 128239



to top

>dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075K04, full
           insert sequence
          Length = 2090

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 483 gggaaagagtttgttgctgctgcta 507
           |||||||||||||||||||| ||||
Sbjct: 521 gggaaagagtttgttgctgcagcta 545



to top

>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 266     ggtggagcatattattcgggagcaaaatatatt 298
               |||||| |||||||||| | |||||||||||||
Sbjct: 1546521 ggtggaacatattattccgaagcaaaatatatt 1546553


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 239,083,242
Number of extensions: 12645609
Number of successful extensions: 277582
Number of sequences better than 10.0: 54
Number of HSP's gapped: 277572
Number of HSP's successfully gapped: 70
Length of query: 1360
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1337
Effective length of database: 18,503,978,556
Effective search space: 24739819329372
Effective search space used: 24739819329372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top