ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf7d16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001051746.1| Oryza sativa (japonica cultivar-group) Os01g... 159 3e-35
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 3e-35
3dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 159 3e-35
4dbj|AK105883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 3e-35
5dbj|AK067058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 3e-35
6dbj|AK059108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 3e-35
7emb|CT833493.1| Oryza sativa (indica cultivar-group) cDNA clone:... 151 8e-33
8gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 from 2, comple... 48 0.085
9dbj|AK237838.1| Sus scrofa mRNA, clone:SPL010105A04, expressed i... 44 1.3
10gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, com... 44 1.3
11gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, com... 44 1.3
12gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, com... 44 1.3
13gb|AC188171.3| Pan troglodytes BAC clone CH251-627I16 from chrom... 42 5.3
14ref|XR_021007.1| PREDICTED: Pan troglodytes similar to neuronal ... 42 5.3
15ref|XR_020187.1| PREDICTED: Pan troglodytes hypothetical protein... 42 5.3
16gb|AC183663.2| Pan troglodytes BAC clone CH251-731L24 from chrom... 42 5.3
17gb|AC185987.2| Pan troglodytes BAC clone CH251-400P17 from chrom... 42 5.3
18gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromo... 42 5.3
19gb|AC182459.3| Pan troglodytes BAC clone CH251-706C19 from chrom... 42 5.3
20gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chrom... 42 5.3
21gb|BC069205.1| Homo sapiens hypothetical protein FLJ20433, mRNA ... 42 5.3
22gb|BC037355.1| Homo sapiens hypothetical protein FLJ20433, mRNA ... 42 5.3
23gb|AC098860.2| Homo sapiens BAC clone RP11-229G4 from 4, complet... 42 5.3
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.3
25gb|AC104821.4| Homo sapiens BAC clone RP11-745L13 from 4, comple... 42 5.3
26emb|BX322799.22| Human DNA sequence from clone RP13-927H1 on chr... 42 5.3
27emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on ch... 42 5.3
28emb|CR788264.3| Human DNA sequence from clone RP11-436G20 on chr... 42 5.3
29emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chro... 42 5.3
30emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chro... 42 5.3
31emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chr... 42 5.3
32emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on ch... 42 5.3
33emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on ch... 42 5.3
34gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, compl... 42 5.3
35emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 5.3
36emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chro... 42 5.3
37gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Ca... 42 5.3
38gb|BC033079.1| Homo sapiens hypothetical protein FLJ20433, mRNA ... 42 5.3
39dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 42 5.3
40dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.3
41emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 42 5.3
42emb|CR382285.2| Human DNA sequence from clone bP-21201H5 on chro... 42 5.3
43emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chr... 42 5.3
44gb|U59229.1|RMU59229 Rhizobium meliloti megaplasmid pRmeSU47b ph... 42 5.3
45gb|BC098920.2| Rattus norvegicus myosin light chain, regulatory ... 42 5.3
46gb|BC110879.1| Homo sapiens hypothetical protein FLJ20433, mRNA ... 42 5.3
47emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on ch... 42 5.3
48gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosom... 42 5.3
49gb|AC102212.4| Mus musculus chromosome 8, clone RP24-374D15, com... 42 5.3 
>ref|NM_001051746.1| Oryza sativa (japonica cultivar-group) Os01g0919500 (Os01g0919500)
            mRNA, complete cds
          Length = 1147
 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                        
Query: 891  gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
            ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 771  gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 830

                                                                        
Query: 951  aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 831  cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 890

                                
Query: 1011 accataagcaacttccaccg 1030
            ||||| | ||||||||||||
Sbjct: 891  accatgaacaacttccaccg 910



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 651 atagatgatgattctgaaactactgctggaccagcaggggaagctcttgatgagcatgtg 710
           ||||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||
Sbjct: 549 atagaagatgattctgaaactacccctggacaagcaggggatgcagttgatgagcatgtg 608
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                            
Query: 891      gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
                ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 40113872 gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 40113931

                                                                            
Query: 951      aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
                 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 40113932 cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 40113991

                                    
Query: 1011     accataagcaacttccaccg 1030
                ||||| | ||||||||||||
Sbjct: 40113992 accatgaacaacttccaccg 40114011



 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 651      atagatgatgattctgaaactactgctggaccagcagg 688
                ||||| |||||||||||||||||  |||||| ||||||
Sbjct: 40111746 atagaagatgattctgaaactacccctggacaagcagg 40111783
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                         
Query: 891   gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
             ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 56956 gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 57015

                                                                         
Query: 951   aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
              |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 57016 cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 57075

                                 
Query: 1011  accataagcaacttccaccg 1030
             ||||| | ||||||||||||
Sbjct: 57076 accatgaacaacttccaccg 57095



 Score = 44.1 bits (22), Expect = 1.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 651   atagatgatgattctgaaactactgctggaccagcagg 688
             ||||| |||||||||||||||||  |||||| ||||||
Sbjct: 54830 atagaagatgattctgaaactacccctggacaagcagg 54867
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>dbj|AK105883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D05, full
            insert sequence
          Length = 1095

 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                        
Query: 891  gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
            ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 771  gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 830

                                                                        
Query: 951  aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 831  cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 890

                                
Query: 1011 accataagcaacttccaccg 1030
            ||||| | ||||||||||||
Sbjct: 891  accatgaacaacttccaccg 910



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 651 atagatgatgattctgaaactactgctggaccagcaggggaagctcttgatgagcatgtg 710
           ||||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||
Sbjct: 549 atagaagatgattctgaaactacccctggacaagcaggggatgcagttgatgagcatgtg 608
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>dbj|AK067058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M15, full
            insert sequence
          Length = 1243

 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                        
Query: 891  gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
            ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 854  gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 913

                                                                        
Query: 951  aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 914  cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 973

                                
Query: 1011 accataagcaacttccaccg 1030
            ||||| | ||||||||||||
Sbjct: 974  accatgaacaacttccaccg 993



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 651 atagatgatgattctgaaactactgctggaccagcaggggaagctcttgatgagcatgtg 710
           ||||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||
Sbjct: 550 atagaagatgattctgaaactacccctggacaagcaggggatgcagttgatgagcatgtg 609
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>dbj|AK059108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D10, full
            insert sequence
          Length = 1147

 Score =  159 bits (80), Expect = 3e-35
 Identities = 125/140 (89%)
 Strand = Plus / Plus

                                                                        
Query: 891  gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
            ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 771  gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 830

                                                                        
Query: 951  aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 831  cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 890

                                
Query: 1011 accataagcaacttccaccg 1030
            ||||| | ||||||||||||
Sbjct: 891  accatgaacaacttccaccg 910



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 651 atagatgatgattctgaaactactgctggaccagcaggggaagctcttgatgagcatgtg 710
           ||||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||
Sbjct: 549 atagaagatgattctgaaactacccctggacaagcaggggatgcagttgatgagcatgtg 608
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>emb|CT833493.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029H17, full
            insert sequence
          Length = 1161

 Score =  151 bits (76), Expect = 8e-33
 Identities = 121/136 (88%)
 Strand = Plus / Plus

                                                                        
Query: 891  gtctgcatgaatgagctggtcaatgcatcatcgaccatctgcggccacatcttctgccag 950
            ||||||||||| ||||||||| |  | ||||||||||||||||| ||||| || ||| ||
Sbjct: 772  gtctgcatgaacgagctggtcgaaccgtcatcgaccatctgcggtcacattttttgcaag 831

                                                                        
Query: 951  aagtgcatcaaggcctccatccaggctcagaagaagtgccctacctgccggaggaagttg 1010
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 832  cagtgtatcaaggcctcaatccaggctcagaagaagtgccctacctgccggaggaagctg 891

                            
Query: 1011 accataagcaacttcc 1026
            ||||| | ||||||||
Sbjct: 892  accatgaacaacttcc 907



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 651 atagatgatgattctgaaactactgctggaccagcaggggaagctcttgatgagcatgtg 710
           ||||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||
Sbjct: 550 atagaagatgattctgaaactacccctggacaagcaggggatgcagttgatgagcatgtg 609
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>gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 from 2, complete sequence
          Length = 99908

 Score = 48.1 bits (24), Expect = 0.085
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 394   ttgaagcactcaatactgggggtt 417
             ||||||||||||||||||||||||
Sbjct: 77734 ttgaagcactcaatactgggggtt 77711
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>dbj|AK237838.1| Sus scrofa mRNA, clone:SPL010105A04, expressed in spleen
          Length = 2591

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 934  gccacatcttctgccagaagtgcatc 959
            |||||||||||||| |||||||||||
Sbjct: 1782 gccacatcttctgcaagaagtgcatc 1807
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>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  gcctgtctcacacaggcagccc 455
            ||||||||||||||||||||||
Sbjct: 1137 gcctgtctcacacaggcagccc 1116
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>gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, complete sequence
          Length = 221768

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 434   gcctgtctcacacaggcagccc 455
             ||||||||||||||||||||||
Sbjct: 42274 gcctgtctcacacaggcagccc 42295
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>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence
          Length = 199782

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 434   gcctgtctcacacaggcagccc 455
             ||||||||||||||||||||||
Sbjct: 61716 gcctgtctcacacaggcagccc 61695
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>gb|AC188171.3| Pan troglodytes BAC clone CH251-627I16 from chromosome 9, complete
              sequence
          Length = 218128

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 158641 gataatagatgatgattctga 158621
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>ref|XR_021007.1| PREDICTED: Pan troglodytes similar to neuronal pentraxin with chromo
            domain (LOC744373), mRNA
          Length = 6032

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                         
Query: 824  caaggtggcccaggctgcccctgaacctg 852
            ||||||||||||| |||||||||||||||
Sbjct: 1473 caaggtggcccag-ctgcccctgaacctg 1500
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>ref|XR_020187.1| PREDICTED: Pan troglodytes hypothetical protein LOC736858
           (LOC736858), mRNA
          Length = 1069

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 173 gctcctcccagccccagccgctcct 197
           |||||| ||||||||||||||||||
Sbjct: 914 gctcctgccagccccagccgctcct 890
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>gb|AC183663.2| Pan troglodytes BAC clone CH251-731L24 from chromosome 9, complete
              sequence
          Length = 227527

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 227461 gataatagatgatgattctga 227481
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>gb|AC185987.2| Pan troglodytes BAC clone CH251-400P17 from chromosome 9, complete
             sequence
          Length = 161307

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 38214 gataatagatgatgattctga 38194
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>gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromosome 9, complete
             sequence
          Length = 165959

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 50567 gataatagatgatgattctga 50547
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>gb|AC182459.3| Pan troglodytes BAC clone CH251-706C19 from chromosome 4, complete
              sequence
          Length = 166951

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 164899 gataatagatgatgattctga 164879
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>gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chromosome 4, complete
              sequence
          Length = 191017

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 148900 gataatagatgatgattctga 148920
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>gb|BC069205.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone
            IMAGE:6574528), with apparent retained intron
          Length = 1457

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 173  gctcctcccagccccagccgctcct 197
            |||||| ||||||||||||||||||
Sbjct: 1278 gctcctgccagccccagccgctcct 1254
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>gb|BC037355.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone
           IMAGE:4622851), complete cds
          Length = 993

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 173 gctcctcccagccccagccgctcct 197
           |||||| ||||||||||||||||||
Sbjct: 817 gctcctgccagccccagccgctcct 793
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>gb|AC098860.2| Homo sapiens BAC clone RP11-229G4 from 4, complete sequence
          Length = 119491

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 111652 gataatagatgatgattctga 111672
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                            
Query: 930      tgcggccacatcttctgccagaagtgcatcaaggcctccatccaggctcagaagaagtgc 989
                ||||| || ||||||||| |||| |||||| |||| |   || ||||||||||||| |||
Sbjct: 26182896 tgcggtcatatcttctgcgagaaatgcatccaggcatggctcaaggctcagaagaaatgc 26182837

                     
Query: 990      cctac 994
                |||||
Sbjct: 26182836 cctac 26182832
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>gb|AC104821.4| Homo sapiens BAC clone RP11-745L13 from 4, complete sequence
          Length = 93879

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 49731 gataatagatgatgattctga 49751
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>emb|BX322799.22| Human DNA sequence from clone RP13-927H1 on chromosome 9, complete
             sequence
          Length = 143968

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 173   gctcctcccagccccagccgctcct 197
             |||||| ||||||||||||||||||
Sbjct: 62968 gctcctgccagccccagccgctcct 62992
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>emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A) and a CpG island, complete sequence
          Length = 161380

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 53277 gataatagatgatgattctga 53297
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>emb|CR788264.3| Human DNA sequence from clone RP11-436G20 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A), complete sequence
          Length = 171101

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 49924 gataatagatgatgattctga 49904
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>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a novel
              gene, two novel pseudogenes, a  pseudogene similar to part
              of myosin V family protein, a tumor suppressor deleted in
              oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene
              similar to part of prostaglandin E receptor 4 (subtype EP4)
              (PTGER4) and a CpG island, complete sequence
          Length = 163569

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 161235 gataatagatgatgattctga 161215
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>emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a
              (RPL7A), a novel pseudogene and a CpG island, complete
              sequence
          Length = 176097

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 102823 gataatagatgatgattctga 102803
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>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains
            two novel pseudogene, a CDRT15 protein pseudogene, a
            pseudogene similar to part of meprin A, alpha (PABA
            peptide hydrolase) (MEP1A) and two CpG islands, complete
            sequence
          Length = 178933

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 647  gataatagatgatgattctga 667
            |||||||||||||||||||||
Sbjct: 2294 gataatagatgatgattctga 2314
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>emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on chromosome 9 Contains the
              IFNA6 gene for interferon, alpha 6, the IFNA13 gene for
              interferon, alpha 13, the IFNA2 gene for interferon, alpha
              2, the IFNA8 gene for interferon, alpha 8, an interferon,
              omega 1 (IFNW1) pseudogene, the IFNA1 gene for interferon,
              alpha 1, 4 interferon pseudogenes, the 3' end of a novel
              gene and a CpG island, complete sequence
          Length = 173211

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 1132   attagagccgtggcagctgtgaccctttt 1160
              |||| ||||||| ||||||||||||||||
Sbjct: 103464 attatagccgtgtcagctgtgaccctttt 103492
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>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A), three novel genes, three novel pseudogene and two
             CpG islands, complete sequence
          Length = 175271

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 36827 gataatagatgatgattctga 36847
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>gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, complete sequence
          Length = 62268

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 651   atagatgatgattctgaaact 671
             |||||||||||||||||||||
Sbjct: 13621 atagatgatgattctgaaact 13601
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1263   cgtgattaccaatctgcatac 1283
              |||||||||||||||||||||
Sbjct: 923520 cgtgattaccaatctgcatac 923500
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>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a tumor
              suppressor deleted in oral cancer-related 1 (DOC-1R)
              pseudogene, a novel pseudogene and a CpG island, complete
              sequence
          Length = 163556

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 647    gataatagatgatgattctga 667
              |||||||||||||||||||||
Sbjct: 161263 gataatagatgatgattctga 161243
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>gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 205283

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 676   ctggaccagcaggggaagctc 696
             |||||||||||||||||||||
Sbjct: 37611 ctggaccagcaggggaagctc 37631
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>gb|BC033079.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone
            IMAGE:5455686), with apparent retained intron
          Length = 1457

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 173  gctcctcccagccccagccgctcct 197
            |||||| ||||||||||||||||||
Sbjct: 1278 gctcctgccagccccagccgctcct 1254
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1191_A10
          Length = 140643

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                          
Query: 930    tgcggccacatcttctgccagaagtgcatcaaggcctccatccaggctcagaagaagtgc 989
              ||||| || ||||||||| |||| |||||| |||| |   || ||||||||||||| |||
Sbjct: 126827 tgcggtcatatcttctgcgagaaatgcatccaggcatggctcaaggctcagaagaaatgc 126768

                   
Query: 990    cctac 994
              |||||
Sbjct: 126767 cctac 126763
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>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_E06
          Length = 112241

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 930   tgcggccacatcttctgccagaagtgcatcaaggcctccatccaggctcagaagaagtgc 989
             ||||| || ||||||||| |||| |||||| |||| |   || ||||||||||||| |||
Sbjct: 15821 tgcggtcatatcttctgcgagaaatgcatccaggcatggctcaaggctcagaagaaatgc 15762

                  
Query: 990   cctac 994
             |||||
Sbjct: 15761 cctac 15757
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>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
             sequence
          Length = 278310

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 12411 gataatagatgatgattctga 12431
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>emb|CR382285.2| Human DNA sequence from clone bP-21201H5 on chromosome 21, complete
             sequence
          Length = 178865

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 647   gataatagatgatgattctga 667
             |||||||||||||||||||||
Sbjct: 34537 gataatagatgatgattctga 34517
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>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete
            sequence
          Length = 176845

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 647  gataatagatgatgattctga 667
            |||||||||||||||||||||
Sbjct: 2336 gataatagatgatgattctga 2356
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>gb|U59229.1|RMU59229 Rhizobium meliloti megaplasmid pRmeSU47b phosphate transport system
            PhoC (phoC), PhoD precursor (phoD), PhoE (phoE), and PhoT
            (phoT) genes, complete cds
          Length = 5705

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1263 cgtgattaccaatctgcatac 1283
            |||||||||||||||||||||
Sbjct: 878  cgtgattaccaatctgcatac 898
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>gb|BC098920.2| Rattus norvegicus myosin light chain, regulatory B, mRNA (cDNA
           clone MGC:114341 IMAGE:7378266), complete cds
          Length = 997

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 173 gctcctcccagccccagccgctcct 197
           |||||| ||||||||||||||||||
Sbjct: 823 gctcctgccagccccagccgctcct 799
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>gb|BC110879.1| Homo sapiens hypothetical protein FLJ20433, mRNA (cDNA clone
           IMAGE:6065497), complete cds
          Length = 997

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 173 gctcctcccagccccagccgctcct 197
           |||||| ||||||||||||||||||
Sbjct: 823 gctcctgccagccccagccgctcct 799
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>emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on chromosome 2, complete
             sequence
          Length = 175045

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 933   ggccacatcttctgccagaag 953
             |||||||||||||||||||||
Sbjct: 25578 ggccacatcttctgccagaag 25598
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>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete
             sequence
          Length = 206286

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 828   gtggcccaggctgcccctgaacctgtgaa 856
             ||||||||||||| || ||||||||||||
Sbjct: 73658 gtggcccaggctggccttgaacctgtgaa 73630
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>gb|AC102212.4| Mus musculus chromosome 8, clone RP24-374D15, complete sequence
          Length = 137171

 Score = 42.1 bits (21), Expect = 5.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 451   agccccctcctatggtggttagcct 475
             ||||| |||||||||||||||||||
Sbjct: 90982 agcccactcctatggtggttagcct 91006


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 233,251,480
Number of extensions: 12166783
Number of successful extensions: 237551
Number of sequences better than 10.0: 49
Number of HSP's gapped: 237551
Number of HSP's successfully gapped: 56
Length of query: 1384
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1361
Effective length of database: 18,503,978,556
Effective search space: 25183914814716
Effective search space used: 25183914814716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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