ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf174o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061649.1| Oryza sativa (japonica cultivar-group) Os05g0295900 (Os05g0295900) mRNA, complete cds Length = 3064 Score = 846 bits (427), Expect = 0.0 Identities = 993/1181 (84%), Gaps = 3/1181 (0%) Strand = Plus / Plus Query: 337 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgcgtcggggagctc 396 |||||||||||||||||||| ||| | |||||||| |||||||||||| | || |||||| Sbjct: 304 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgcattggtgagctc 363 Query: 397 gtggagagcgactcgccatacagttgttggttgggaacttgttttcttggcgtgactttc 456 || ||| | ||| ||||||||||||||||||||| ||||| ||||| || |||| ||| Sbjct: 364 atgcagaacaacttgccatacagttgttggttgggtacttgctttctcggtctgacgttc 423 Query: 457 caagagtgcagcagtgagcgctttgctgaatcatactctgattggtttgagaagattctg 516 ||||||||| ||| |||||||||||| ||||||||||| |||||||||||| ||||| Sbjct: 424 caagagtgctgcaatgagcgctttgcagaatcatactccagttggtttgagaaaattctt 483 Query: 517 aggaacttgcagggaccgtctagcttgcaacttgttaccgtggtctcttgtacttccatg 576 || |||||||||| ||| |||| |||||||||||| | |||||||||||||||||| Sbjct: 484 agtaacttgcaggaaccatctactgtgcaacttgttattatagtctcttgtacttccatg 543 Query: 577 tctgatctatttgtgagattggtgaaatttttgaacttaaagaaagaggcatcatccttt 636 |||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| ||| Sbjct: 544 tctgatttatttgtgagactggcaaggtttttgaacttaaagaaagaggcatcatcattt 603 Query: 637 gctggaagagttgttgaaccattgctgctgcttttaaatgaaaatggtccagtggcggat 696 ||||||||| |||||||||| |||||||||||||||||| |||||||| |||||| ||| Sbjct: 604 gctggaagacttgttgaacctgtgctgctgcttttaaatggaaatggtcaagtggctgat 663 Query: 697 gaagcgattgatttgctaaggacagttattaaattgtatccctcatctgttaatcgacac 756 ||||| |||||||||| |||||||||||||||||||| || |||||| | |||||||| Sbjct: 664 gaagcagttgatttgctgaggacagttattaaattgtacccatcatctttaaatcgacat 723 Query: 757 tacaataaagttgaatccaccattgcagcaaagattatgagtacagaagtcaatgtaaaa 816 |||||||||||||||||| |||||||| |||| | |||||| ||||||||||| | ||| Sbjct: 724 tacaataaagttgaatccgccattgcaacaaatgtaatgagttcagaagtcaatatcaaa 783 Query: 817 ttatcaaagaaatttgcgagagtcttagcaatgctaccttctgtccgggtatctgaaggc 876 || ||||||| || |||| ||||||| ||||||||||||| |||||||| | Sbjct: 784 ctaaaggagaaattcgcaagagccttagcatcattaccttctgtccgagtatctgaggag 843 Query: 877 aattggtcattgatgattcagaaagtgctgatgggtataaacaatcttctgaacgatgct 936 | |||||||||||||||||| || | || || | |||| |||||| |||| ||||| Sbjct: 844 agttggtcattgatgattcaaaagatactaattgtggtaaataatcttttgaatgatgca 903 Query: 937 tttgttgggctggaagaagaaaagaaagggcgtgagattatgatgctcctagttccacct 996 ||| ||||||||||||||||||||||||| | ||||||| | ||| | |||||||||||| Sbjct: 904 tttattgggctggaagaagaaaagaaaggccatgagattctaatgttactagttccacct 963 Query: 997 ggtaatgatcctccgccagtgttgggagatcaagtaaaattg---ggaggcaatttgcat 1053 || ||||||||||| | | || ||||||||||| ||| | | ||||| ||| ||||| Sbjct: 964 ggaaatgatcctccactaatgctgggagatcaaacaaagtggtctggaggaaatgtgcat 1023 Query: 1054 gtgacaaagaaatttcgtgtcttcacggttcctaccatttcagcccttgcccattgctgc 1113 || ||||||||||||||||||| || |||||||| ||||||| |||| ||||||||| Sbjct: 1024 gtcacaaagaaatttcgtgtctatactgttcctactatttcagtccttattcattgctgc 1083 Query: 1114 tgcatgatgctgactagttattacccagttcaggtcaccgttcctgtccgtgctttgata 1173 || ||||||||||||||||||| ||||||||||| | || || || |||||||||||| Sbjct: 1084 tgtgtgatgctgactagttattatccagttcaggtgaatgtcccagtgcgtgctttgata 1143 Query: 1174 gctctgtcacggagagtgctcttagtcgatggatcattgcgcaacaagtcgttcccttca 1233 ||| || |||||||||| || | ||| ||||| ||||||| || |||| ||||||||| Sbjct: 1144 gctttgacacggagagttctgtcagttgatgggtcattgcataaaaagttattcccttca 1203 Query: 1234 actacgtccttgcaccaagagcttatttgttttgagcttccattattgcattcatctttc 1293 || || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1204 acaacttccttgcaccaagagcttatttgttttgagcttccatcattgcattctactttc 1263 Query: 1294 ttggatttgctccatgcaactattaaagggatgcgaagccaacttttaccgcatggtgct 1353 |||||||||||| |||||| || ||||| ||||||||||||||||| || |||| |||| Sbjct: 1264 ttggatttgctcagtgcaacaataaaaggaatgcgaagccaacttttgccacatgctgct 1323 Query: 1354 aatattgtacggcttgtaactgattacttcaaaattgcaaagttgcctactacgaggaca 1413 |||||||| ||||| ||||| | ||||| |||| || |||||| |||||| ||||||| Sbjct: 1324 aatattgttcggctcataactaagtactttgaaatagcgaagttgtctactatgaggaca 1383 Query: 1414 aaagcttacagcattgttcagctgttgctgacctccatgggtgttggaatgtctctccat 1473 |||| ||| ||||||| |||| ||||||||| |||||||| ||||| || ||| | || Sbjct: 1384 aaagtatacggcattgtgcagcagttgctgacatccatgggcgttgggatatctatgcac 1443 Query: 1474 ttgttagaggcaatagtcagcaatgcagttggtgatctgga 1514 ||| | ||||| ||||| |||||| |||||| ||||||||| Sbjct: 1444 ttgcttgaggccatagtaagcaattcagttgctgatctgga 1484 Score = 226 bits (114), Expect = 4e-55 Identities = 233/272 (85%), Gaps = 3/272 (1%) Strand = Plus / Plus Query: 1918 ggggagacaagcatatcagactttcgacttgcttcattgaaggcattgctggcatctttt 1977 ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| Sbjct: 1876 ggggagacaagcatagcagacttccagcttgcttcattgaaggcattgttggcatctttt 1935 Query: 1978 ctctcgtctcctcatgcctggccactttatttagcccaaggaactgaactcttcagaaaa 2037 || || |||| ||||| | || | ||||||||||||||||| |||||||||||||| | Sbjct: 1936 ctttcttctc---atgcccgccctccttatttagcccaaggaattgaactcttcagaaga 1992 Query: 2038 gggaagctagagataggcactacgctcgcagagttttgttcgcatgccttgctggctttg 2097 || ||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||||||| Sbjct: 1993 ggaaagctagagataggcactaagcttgcagaattttgttcacatgctttgctggctttg 2052 Query: 2098 gatgttcttacgcaccctcgagccctttctctagaaaaggcaggtcctttagttcctgca 2157 ||||| ||||| || |||||||| ||||||||||||| |||| ||||| || |||| | Sbjct: 2053 gatgtccttacacatcctcgagcactttctctagaaagtgcagctccttcaggccctgga 2112 Query: 2158 ctcaaccgcagtgaaccagaaaaggcaatttt 2189 |||| | | ||| ||| |||||||||||||| Sbjct: 2113 ctcacctacggtgcacctgaaaaggcaatttt 2144 Score = 172 bits (87), Expect = 5e-39 Identities = 150/171 (87%) Strand = Plus / Plus Query: 1718 ctgaaactccaggagatgttagaatgttcacaccactctgtgttaaagtggctgcactag 1777 |||||||| ||| |||||||||||||| || ||||||| ||| ||| | || || || | Sbjct: 1673 ctgaaactacagctgatgttagaatgttgactccactctctgtgaaactagcagctcttg 1732 Query: 1778 aaaccttggaaattcttctgaatgtggggggttcactgaggacagatcactggagggcaa 1837 |||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1733 aaacgctggaaattctacttaatgtggggggttcactgaggacagatcactggagggcag 1792 Query: 1838 aagtggacttgctcctaattaacatagctacaagtgcttgcgactcaggag 1888 | |||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct: 1793 aggtggacttgctcctaattaacatagctagaagtgcttgtgacacaggag 1843 Score = 77.8 bits (39), Expect = 2e-10 Identities = 93/111 (83%) Strand = Plus / Plus Query: 1582 tcaaaaagttactccaagaagaggaagcaagaaccacaaatacaaaattcacatgcctcg 1641 ||||||||||| ||||||||||||||||||||| || | |||||||| ||||| ||| Sbjct: 1552 tcaaaaagttattccaagaagaggaagcaagaaacagattcacaaaatttacatgtctcc 1611 Query: 1642 ggtttggagaaagcagcaatcagcccaaagaaaatgaaaacctcttccatg 1692 |||| || ||| ||| ||||||||| ||||||| ||||| ||||||||| Sbjct: 1612 ggttcagacaaaacagtaatcagccctaagaaaaggaaaagttcttccatg 1662 Score = 61.9 bits (31), Expect = 1e-05 Identities = 115/143 (80%) Strand = Plus / Plus Query: 163 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 222 |||||||| |||| ||||||| |||||| ||||| || ||||| || | |||||| ||| Sbjct: 130 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 189 Query: 223 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 282 |||||| ||||| ||| |||| | | | | ||||| |||||| |||||||| |||| Sbjct: 190 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 249 Query: 283 gcggtgcgcacgcacggtctcct 305 |||||||||||||| || ||||| Sbjct: 250 gcggtgcgcacgcatggcctcct 272 Score = 44.1 bits (22), Expect = 3.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2255 cttatgatgattggttgccatccatcaagg 2284 ||||||||||||||||| |||||| ||||| Sbjct: 2210 cttatgatgattggttgacatccaccaagg 2239
>dbj|AK069962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D24, full insert sequence Length = 3065 Score = 846 bits (427), Expect = 0.0 Identities = 993/1181 (84%), Gaps = 3/1181 (0%) Strand = Plus / Plus Query: 337 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgcgtcggggagctc 396 |||||||||||||||||||| ||| | |||||||| |||||||||||| | || |||||| Sbjct: 305 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgcattggtgagctc 364 Query: 397 gtggagagcgactcgccatacagttgttggttgggaacttgttttcttggcgtgactttc 456 || ||| | ||| ||||||||||||||||||||| ||||| ||||| || |||| ||| Sbjct: 365 atgcagaacaacttgccatacagttgttggttgggtacttgctttctcggtctgacgttc 424 Query: 457 caagagtgcagcagtgagcgctttgctgaatcatactctgattggtttgagaagattctg 516 ||||||||| ||| |||||||||||| ||||||||||| |||||||||||| ||||| Sbjct: 425 caagagtgctgcaatgagcgctttgcagaatcatactccagttggtttgagaaaattctt 484 Query: 517 aggaacttgcagggaccgtctagcttgcaacttgttaccgtggtctcttgtacttccatg 576 || |||||||||| ||| |||| |||||||||||| | |||||||||||||||||| Sbjct: 485 agtaacttgcaggaaccatctactgtgcaacttgttattatagtctcttgtacttccatg 544 Query: 577 tctgatctatttgtgagattggtgaaatttttgaacttaaagaaagaggcatcatccttt 636 |||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| ||| Sbjct: 545 tctgatttatttgtgagactggcaaggtttttgaacttaaagaaagaggcatcatcattt 604 Query: 637 gctggaagagttgttgaaccattgctgctgcttttaaatgaaaatggtccagtggcggat 696 ||||||||| |||||||||| |||||||||||||||||| |||||||| |||||| ||| Sbjct: 605 gctggaagacttgttgaacctgtgctgctgcttttaaatggaaatggtcaagtggctgat 664 Query: 697 gaagcgattgatttgctaaggacagttattaaattgtatccctcatctgttaatcgacac 756 ||||| |||||||||| |||||||||||||||||||| || |||||| | |||||||| Sbjct: 665 gaagcagttgatttgctgaggacagttattaaattgtacccatcatctttaaatcgacat 724 Query: 757 tacaataaagttgaatccaccattgcagcaaagattatgagtacagaagtcaatgtaaaa 816 |||||||||||||||||| |||||||| |||| | |||||| ||||||||||| | ||| Sbjct: 725 tacaataaagttgaatccgccattgcaacaaatgtaatgagttcagaagtcaatatcaaa 784 Query: 817 ttatcaaagaaatttgcgagagtcttagcaatgctaccttctgtccgggtatctgaaggc 876 || ||||||| || |||| ||||||| ||||||||||||| |||||||| | Sbjct: 785 ctaaaggagaaattcgcaagagccttagcatcattaccttctgtccgagtatctgaggag 844 Query: 877 aattggtcattgatgattcagaaagtgctgatgggtataaacaatcttctgaacgatgct 936 | |||||||||||||||||| || | || || | |||| |||||| |||| ||||| Sbjct: 845 agttggtcattgatgattcaaaagatactaattgtggtaaataatcttttgaatgatgca 904 Query: 937 tttgttgggctggaagaagaaaagaaagggcgtgagattatgatgctcctagttccacct 996 ||| ||||||||||||||||||||||||| | ||||||| | ||| | |||||||||||| Sbjct: 905 tttattgggctggaagaagaaaagaaaggccatgagattctaatgttactagttccacct 964 Query: 997 ggtaatgatcctccgccagtgttgggagatcaagtaaaattg---ggaggcaatttgcat 1053 || ||||||||||| | | || ||||||||||| ||| | | ||||| ||| ||||| Sbjct: 965 ggaaatgatcctccactaatgctgggagatcaaacaaagtggtctggaggaaatgtgcat 1024 Query: 1054 gtgacaaagaaatttcgtgtcttcacggttcctaccatttcagcccttgcccattgctgc 1113 || ||||||||||||||||||| || |||||||| ||||||| |||| ||||||||| Sbjct: 1025 gtcacaaagaaatttcgtgtctatactgttcctactatttcagtccttattcattgctgc 1084 Query: 1114 tgcatgatgctgactagttattacccagttcaggtcaccgttcctgtccgtgctttgata 1173 || ||||||||||||||||||| ||||||||||| | || || || |||||||||||| Sbjct: 1085 tgtgtgatgctgactagttattatccagttcaggtgaatgtcccagtgcgtgctttgata 1144 Query: 1174 gctctgtcacggagagtgctcttagtcgatggatcattgcgcaacaagtcgttcccttca 1233 ||| || |||||||||| || | ||| ||||| ||||||| || |||| ||||||||| Sbjct: 1145 gctttgacacggagagttctgtcagttgatgggtcattgcataaaaagttattcccttca 1204 Query: 1234 actacgtccttgcaccaagagcttatttgttttgagcttccattattgcattcatctttc 1293 || || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1205 acaacttccttgcaccaagagcttatttgttttgagcttccatcattgcattctactttc 1264 Query: 1294 ttggatttgctccatgcaactattaaagggatgcgaagccaacttttaccgcatggtgct 1353 |||||||||||| |||||| || ||||| ||||||||||||||||| || |||| |||| Sbjct: 1265 ttggatttgctcagtgcaacaataaaaggaatgcgaagccaacttttgccacatgctgct 1324 Query: 1354 aatattgtacggcttgtaactgattacttcaaaattgcaaagttgcctactacgaggaca 1413 |||||||| ||||| ||||| | ||||| |||| || |||||| |||||| ||||||| Sbjct: 1325 aatattgttcggctcataactaagtactttgaaatagcgaagttgtctactatgaggaca 1384 Query: 1414 aaagcttacagcattgttcagctgttgctgacctccatgggtgttggaatgtctctccat 1473 |||| ||| ||||||| |||| ||||||||| |||||||| ||||| || ||| | || Sbjct: 1385 aaagtatacggcattgtgcagcagttgctgacatccatgggcgttgggatatctatgcac 1444 Query: 1474 ttgttagaggcaatagtcagcaatgcagttggtgatctgga 1514 ||| | ||||| ||||| |||||| |||||| ||||||||| Sbjct: 1445 ttgcttgaggccatagtaagcaattcagttgctgatctgga 1485 Score = 226 bits (114), Expect = 4e-55 Identities = 233/272 (85%), Gaps = 3/272 (1%) Strand = Plus / Plus Query: 1918 ggggagacaagcatatcagactttcgacttgcttcattgaaggcattgctggcatctttt 1977 ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| Sbjct: 1877 ggggagacaagcatagcagacttccagcttgcttcattgaaggcattgttggcatctttt 1936 Query: 1978 ctctcgtctcctcatgcctggccactttatttagcccaaggaactgaactcttcagaaaa 2037 || || |||| ||||| | || | ||||||||||||||||| |||||||||||||| | Sbjct: 1937 ctttcttctc---atgcccgccctccttatttagcccaaggaattgaactcttcagaaga 1993 Query: 2038 gggaagctagagataggcactacgctcgcagagttttgttcgcatgccttgctggctttg 2097 || ||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||||||| Sbjct: 1994 ggaaagctagagataggcactaagcttgcagaattttgttcacatgctttgctggctttg 2053 Query: 2098 gatgttcttacgcaccctcgagccctttctctagaaaaggcaggtcctttagttcctgca 2157 ||||| ||||| || |||||||| ||||||||||||| |||| ||||| || |||| | Sbjct: 2054 gatgtccttacacatcctcgagcactttctctagaaagtgcagctccttcaggccctgga 2113 Query: 2158 ctcaaccgcagtgaaccagaaaaggcaatttt 2189 |||| | | ||| ||| |||||||||||||| Sbjct: 2114 ctcacctacggtgcacctgaaaaggcaatttt 2145 Score = 172 bits (87), Expect = 5e-39 Identities = 150/171 (87%) Strand = Plus / Plus Query: 1718 ctgaaactccaggagatgttagaatgttcacaccactctgtgttaaagtggctgcactag 1777 |||||||| ||| |||||||||||||| || ||||||| ||| ||| | || || || | Sbjct: 1674 ctgaaactacagctgatgttagaatgttgactccactctctgtgaaactagcagctcttg 1733 Query: 1778 aaaccttggaaattcttctgaatgtggggggttcactgaggacagatcactggagggcaa 1837 |||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1734 aaacgctggaaattctacttaatgtggggggttcactgaggacagatcactggagggcag 1793 Query: 1838 aagtggacttgctcctaattaacatagctacaagtgcttgcgactcaggag 1888 | |||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct: 1794 aggtggacttgctcctaattaacatagctagaagtgcttgtgacacaggag 1844 Score = 77.8 bits (39), Expect = 2e-10 Identities = 93/111 (83%) Strand = Plus / Plus Query: 1582 tcaaaaagttactccaagaagaggaagcaagaaccacaaatacaaaattcacatgcctcg 1641 ||||||||||| ||||||||||||||||||||| || | |||||||| ||||| ||| Sbjct: 1553 tcaaaaagttattccaagaagaggaagcaagaaacagattcacaaaatttacatgtctcc 1612 Query: 1642 ggtttggagaaagcagcaatcagcccaaagaaaatgaaaacctcttccatg 1692 |||| || ||| ||| ||||||||| ||||||| ||||| ||||||||| Sbjct: 1613 ggttcagacaaaacagtaatcagccctaagaaaaggaaaagttcttccatg 1663 Score = 61.9 bits (31), Expect = 1e-05 Identities = 115/143 (80%) Strand = Plus / Plus Query: 163 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 222 |||||||| |||| ||||||| |||||| ||||| || ||||| || | |||||| ||| Sbjct: 131 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 190 Query: 223 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 282 |||||| ||||| ||| |||| | | | | ||||| |||||| |||||||| |||| Sbjct: 191 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 250 Query: 283 gcggtgcgcacgcacggtctcct 305 |||||||||||||| || ||||| Sbjct: 251 gcggtgcgcacgcatggcctcct 273 Score = 44.1 bits (22), Expect = 3.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2255 cttatgatgattggttgccatccatcaagg 2284 ||||||||||||||||| |||||| ||||| Sbjct: 2211 cttatgatgattggttgacatccaccaagg 2240
>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02, complete sequence Length = 145676 Score = 163 bits (82), Expect = 5e-36 Identities = 148/170 (87%) Strand = Plus / Minus Query: 1162 cgtgctttgatagctctgtcacggagagtgctcttagtcgatggatcattgcgcaacaag 1221 ||||||||||||||| || |||||||||| || | ||| ||||| ||||||| || ||| Sbjct: 57933 cgtgctttgatagctttgacacggagagttctgtcagttgatgggtcattgcataaaaag 57874 Query: 1222 tcgttcccttcaactacgtccttgcaccaagagcttatttgttttgagcttccattattg 1281 | ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 57873 ttattcccttcaacaacttccttgcaccaagagcttatttgttttgagcttccatcattg 57814 Query: 1282 cattcatctttcttggatttgctccatgcaactattaaagggatgcgaag 1331 ||||| ||||||||||||||||| |||||| || ||||| |||||||| Sbjct: 57813 cattctactttcttggatttgctcagtgcaacaataaaaggaatgcgaag 57764 Score = 135 bits (68), Expect = 1e-27 Identities = 166/198 (83%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 954 agaaaagaaagggcgtgagattatgatgctcctagttccacctggtaatgatcctccgcc 1013 |||||||||||| | ||||||| | ||| | |||||||||||||| ||||||||||| | Sbjct: 58236 agaaaagaaaggccatgagattctaatgttactagttccacctggaaatgatcctccact 58177 Query: 1014 agtgttgggagatcaagtaaaattg---ggaggcaatttgcatgtgacaaagaaatttcg 1070 | || ||||||||||| ||| | | ||||| ||| ||||||| |||||||||||||| Sbjct: 58176 aatgctgggagatcaaacaaagtggtctggaggaaatgtgcatgtcacaaagaaatttcg 58117 Query: 1071 tgtcttcacggttcctaccatttcagcccttgcccattgctgctgcatgatgctgactag 1130 ||||| || |||||||| ||||||| |||| ||||||||||| ||||||||||||| Sbjct: 58116 tgtctatactgttcctactatttcagtccttattcattgctgctgtgtgatgctgactag 58057 Query: 1131 ttattacccagttcaggt 1148 |||||| ||||||||||| Sbjct: 58056 ttattatccagttcaggt 58039 Score = 131 bits (66), Expect = 2e-26 Identities = 81/86 (94%) Strand = Plus / Minus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 55650 ggggggttcactgaggacagatcactggagggcagaggtggacttgctcctaattaacat 55591 Query: 1863 agctacaagtgcttgcgactcaggag 1888 ||||| ||||||||| ||| |||||| Sbjct: 55590 agctagaagtgcttgtgacacaggag 55565 Score = 129 bits (65), Expect = 7e-26 Identities = 83/89 (93%) Strand = Plus / Minus Query: 604 tttttgaacttaaagaaagaggcatcatcctttgctggaagagttgttgaaccattgctg 663 ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| Sbjct: 59983 tttttgaacttaaagaaagaggcatcatcatttgctggaagacttgttgaacctgtgctg 59924 Query: 664 ctgcttttaaatgaaaatggtccagtggc 692 ||||||||||||| |||||||| |||||| Sbjct: 59923 ctgcttttaaatggaaatggtcaagtggc 59895 Score = 121 bits (61), Expect = 2e-23 Identities = 127/149 (85%) Strand = Plus / Minus Query: 2041 aagctagagataggcactacgctcgcagagttttgttcgcatgccttgctggctttggat 2100 ||||||||||||||||||| ||| ||||| |||||||| ||||| ||||||||||||||| Sbjct: 54318 aagctagagataggcactaagcttgcagaattttgttcacatgctttgctggctttggat 54259 Query: 2101 gttcttacgcaccctcgagccctttctctagaaaaggcaggtcctttagttcctgcactc 2160 || ||||| || |||||||| ||||||||||||| |||| ||||| || |||| |||| Sbjct: 54258 gtccttacacatcctcgagcactttctctagaaagtgcagctccttcaggccctggactc 54199 Query: 2161 aaccgcagtgaaccagaaaaggcaatttt 2189 | | | ||| ||| |||||||||||||| Sbjct: 54198 acctacggtgcacctgaaaaggcaatttt 54170 Score = 117 bits (59), Expect = 3e-22 Identities = 104/119 (87%) Strand = Plus / Minus Query: 411 gccatacagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcag 470 ||||||||||||||||||||| ||||| ||||| || |||| |||||||||||| ||| Sbjct: 61159 gccatacagttgttggttgggtacttgctttctcggtctgacgttccaagagtgctgcaa 61100 Query: 471 tgagcgctttgctgaatcatactctgattggtttgagaagattctgaggaacttgcagg 529 |||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||| Sbjct: 61099 tgagcgctttgcagaatcatactccagttggtttgagaaaattcttagtaacttgcagg 61041 Score = 111 bits (56), Expect = 2e-20 Identities = 103/118 (87%), Gaps = 3/118 (2%) Strand = Plus / Minus Query: 1918 ggggagacaagcatatcagactttcgacttgcttcattgaaggcattgctggcatctttt 1977 ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| Sbjct: 55532 ggggagacaagcatagcagacttccagcttgcttcattgaaggcattgttggcatctttt 55473 Query: 1978 ctctcgtctcctcatgcctggccactttatttagcccaaggaactgaactcttcagaa 2035 || ||| |||||||| | || | ||||||||||||||||| |||||||||||||| Sbjct: 55472 ct---ttcttctcatgcccgccctccttatttagcccaaggaattgaactcttcagaa 55418 Score = 93.7 bits (47), Expect = 4e-15 Identities = 110/131 (83%) Strand = Plus / Minus Query: 1330 agccaacttttaccgcatggtgctaatattgtacggcttgtaactgattacttcaaaatt 1389 ||||||||||| || |||| |||||||||||| ||||| ||||| | ||||| |||| Sbjct: 57475 agccaacttttgccacatgctgctaatattgttcggctcataactaagtactttgaaata 57416 Query: 1390 gcaaagttgcctactacgaggacaaaagcttacagcattgttcagctgttgctgacctcc 1449 || |||||| |||||| ||||||||||| ||| ||||||| |||| ||||||||| ||| Sbjct: 57415 gcgaagttgtctactatgaggacaaaagtatacggcattgtgcagcagttgctgacatcc 57356 Query: 1450 atgggtgttgg 1460 ||||| ||||| Sbjct: 57355 atgggcgttgg 57345 Score = 85.7 bits (43), Expect = 9e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 693 ggatgaagcgattgatttgctaaggacagttattaaattgtatccctcatctgttaatcg 752 ||||||||| |||||||||| |||||||||||||||||||| || |||||| | ||||| Sbjct: 59818 ggatgaagcagttgatttgctgaggacagttattaaattgtacccatcatctttaaatcg 59759 Query: 753 acactacaataaagt 767 ||| ||||||||||| Sbjct: 59758 acattacaataaagt 59744 Score = 77.8 bits (39), Expect = 2e-10 Identities = 93/111 (83%) Strand = Plus / Minus Query: 1582 tcaaaaagttactccaagaagaggaagcaagaaccacaaatacaaaattcacatgcctcg 1641 ||||||||||| ||||||||||||||||||||| || | |||||||| ||||| ||| Sbjct: 56685 tcaaaaagttattccaagaagaggaagcaagaaacagattcacaaaatttacatgtctcc 56626 Query: 1642 ggtttggagaaagcagcaatcagcccaaagaaaatgaaaacctcttccatg 1692 |||| || ||| ||| ||||||||| ||||||| ||||| ||||||||| Sbjct: 56625 ggttcagacaaaacagtaatcagccctaagaaaaggaaaagttcttccatg 56575 Score = 63.9 bits (32), Expect = 3e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 542 tgcaacttgttaccgtggtctcttgtacttccatgtctgatctatttgtgag 593 |||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct: 60471 tgcaacttgttattatagtctcttgtacttccatgtctgatttatttgtgag 60420 Score = 63.9 bits (32), Expect = 3e-06 Identities = 44/48 (91%) Strand = Plus / Minus Query: 337 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgc 384 |||||||||||||||||||| ||| | |||||||| |||||||||||| Sbjct: 62113 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgc 62066 Score = 61.9 bits (31), Expect = 1e-05 Identities = 115/143 (80%) Strand = Plus / Minus Query: 163 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 222 |||||||| |||| ||||||| |||||| ||||| || ||||| || | |||||| ||| Sbjct: 62287 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 62228 Query: 223 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 282 |||||| ||||| ||| |||| | | | | ||||| |||||| |||||||| |||| Sbjct: 62227 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 62168 Query: 283 gcggtgcgcacgcacggtctcct 305 |||||||||||||| || ||||| Sbjct: 62167 gcggtgcgcacgcatggcctcct 62145 Score = 58.0 bits (29), Expect = 2e-04 Identities = 86/105 (81%) Strand = Plus / Minus Query: 851 taccttctgtccgggtatctgaaggcaattggtcattgatgattcagaaagtgctgatgg 910 ||||||||||||| |||||||| | | |||||||||||||||||| || | || || | Sbjct: 58412 taccttctgtccgagtatctgaggagagttggtcattgatgattcaaaagatactaattg 58353 Query: 911 gtataaacaatcttctgaacgatgcttttgttgggctggaagaag 955 |||| |||||| |||| ||||| ||| ||||||||||||||| Sbjct: 58352 tggtaaataatcttttgaatgatgcatttattgggctggaagaag 58308 Score = 46.1 bits (23), Expect = 0.77 Identities = 71/87 (81%) Strand = Plus / Minus Query: 1718 ctgaaactccaggagatgttagaatgttcacaccactctgtgttaaagtggctgcactag 1777 |||||||| ||| |||||||||||||| || ||||||| ||| ||| | || || || | Sbjct: 56564 ctgaaactacagctgatgttagaatgttgactccactctctgtgaaactagcagctcttg 56505 Query: 1778 aaaccttggaaattcttctgaatgtgg 1804 |||| |||||||||| || ||||||| Sbjct: 56504 aaacgctggaaattctacttaatgtgg 56478 Score = 44.1 bits (22), Expect = 3.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2255 cttatgatgattggttgccatccatcaagg 2284 ||||||||||||||||| |||||| ||||| Sbjct: 54104 cttatgatgattggttgacatccaccaagg 54075
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 163 bits (82), Expect = 5e-36 Identities = 148/170 (87%) Strand = Plus / Minus Query: 1162 cgtgctttgatagctctgtcacggagagtgctcttagtcgatggatcattgcgcaacaag 1221 ||||||||||||||| || |||||||||| || | ||| ||||| ||||||| || ||| Sbjct: 138410 cgtgctttgatagctttgacacggagagttctgtcagttgatgggtcattgcataaaaag 138351 Query: 1222 tcgttcccttcaactacgtccttgcaccaagagcttatttgttttgagcttccattattg 1281 | ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 138350 ttattcccttcaacaacttccttgcaccaagagcttatttgttttgagcttccatcattg 138291 Query: 1282 cattcatctttcttggatttgctccatgcaactattaaagggatgcgaag 1331 ||||| ||||||||||||||||| |||||| || ||||| |||||||| Sbjct: 138290 cattctactttcttggatttgctcagtgcaacaataaaaggaatgcgaag 138241 Score = 135 bits (68), Expect = 1e-27 Identities = 166/198 (83%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 954 agaaaagaaagggcgtgagattatgatgctcctagttccacctggtaatgatcctccgcc 1013 |||||||||||| | ||||||| | ||| | |||||||||||||| ||||||||||| | Sbjct: 138713 agaaaagaaaggccatgagattctaatgttactagttccacctggaaatgatcctccact 138654 Query: 1014 agtgttgggagatcaagtaaaattg---ggaggcaatttgcatgtgacaaagaaatttcg 1070 | || ||||||||||| ||| | | ||||| ||| ||||||| |||||||||||||| Sbjct: 138653 aatgctgggagatcaaacaaagtggtctggaggaaatgtgcatgtcacaaagaaatttcg 138594 Query: 1071 tgtcttcacggttcctaccatttcagcccttgcccattgctgctgcatgatgctgactag 1130 ||||| || |||||||| ||||||| |||| ||||||||||| ||||||||||||| Sbjct: 138593 tgtctatactgttcctactatttcagtccttattcattgctgctgtgtgatgctgactag 138534 Query: 1131 ttattacccagttcaggt 1148 |||||| ||||||||||| Sbjct: 138533 ttattatccagttcaggt 138516 Score = 131 bits (66), Expect = 2e-26 Identities = 81/86 (94%) Strand = Plus / Minus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 136127 ggggggttcactgaggacagatcactggagggcagaggtggacttgctcctaattaacat 136068 Query: 1863 agctacaagtgcttgcgactcaggag 1888 ||||| ||||||||| ||| |||||| Sbjct: 136067 agctagaagtgcttgtgacacaggag 136042 Score = 129 bits (65), Expect = 7e-26 Identities = 83/89 (93%) Strand = Plus / Minus Query: 604 tttttgaacttaaagaaagaggcatcatcctttgctggaagagttgttgaaccattgctg 663 ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| Sbjct: 140460 tttttgaacttaaagaaagaggcatcatcatttgctggaagacttgttgaacctgtgctg 140401 Query: 664 ctgcttttaaatgaaaatggtccagtggc 692 ||||||||||||| |||||||| |||||| Sbjct: 140400 ctgcttttaaatggaaatggtcaagtggc 140372 Score = 121 bits (61), Expect = 2e-23 Identities = 127/149 (85%) Strand = Plus / Minus Query: 2041 aagctagagataggcactacgctcgcagagttttgttcgcatgccttgctggctttggat 2100 ||||||||||||||||||| ||| ||||| |||||||| ||||| ||||||||||||||| Sbjct: 134795 aagctagagataggcactaagcttgcagaattttgttcacatgctttgctggctttggat 134736 Query: 2101 gttcttacgcaccctcgagccctttctctagaaaaggcaggtcctttagttcctgcactc 2160 || ||||| || |||||||| ||||||||||||| |||| ||||| || |||| |||| Sbjct: 134735 gtccttacacatcctcgagcactttctctagaaagtgcagctccttcaggccctggactc 134676 Query: 2161 aaccgcagtgaaccagaaaaggcaatttt 2189 | | | ||| ||| |||||||||||||| Sbjct: 134675 acctacggtgcacctgaaaaggcaatttt 134647 Score = 111 bits (56), Expect = 2e-20 Identities = 103/118 (87%), Gaps = 3/118 (2%) Strand = Plus / Minus Query: 1918 ggggagacaagcatatcagactttcgacttgcttcattgaaggcattgctggcatctttt 1977 ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| Sbjct: 136009 ggggagacaagcatagcagacttccagcttgcttcattgaaggcattgttggcatctttt 135950 Query: 1978 ctctcgtctcctcatgcctggccactttatttagcccaaggaactgaactcttcagaa 2035 || ||| |||||||| | || | ||||||||||||||||| |||||||||||||| Sbjct: 135949 ct---ttcttctcatgcccgccctccttatttagcccaaggaattgaactcttcagaa 135895 Score = 93.7 bits (47), Expect = 4e-15 Identities = 110/131 (83%) Strand = Plus / Minus Query: 1330 agccaacttttaccgcatggtgctaatattgtacggcttgtaactgattacttcaaaatt 1389 ||||||||||| || |||| |||||||||||| ||||| ||||| | ||||| |||| Sbjct: 137952 agccaacttttgccacatgctgctaatattgttcggctcataactaagtactttgaaata 137893 Query: 1390 gcaaagttgcctactacgaggacaaaagcttacagcattgttcagctgttgctgacctcc 1449 || |||||| |||||| ||||||||||| ||| ||||||| |||| ||||||||| ||| Sbjct: 137892 gcgaagttgtctactatgaggacaaaagtatacggcattgtgcagcagttgctgacatcc 137833 Query: 1450 atgggtgttgg 1460 ||||| ||||| Sbjct: 137832 atgggcgttgg 137822 Score = 85.7 bits (43), Expect = 9e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 693 ggatgaagcgattgatttgctaaggacagttattaaattgtatccctcatctgttaatcg 752 ||||||||| |||||||||| |||||||||||||||||||| || |||||| | ||||| Sbjct: 140295 ggatgaagcagttgatttgctgaggacagttattaaattgtacccatcatctttaaatcg 140236 Query: 753 acactacaataaagt 767 ||| ||||||||||| Sbjct: 140235 acattacaataaagt 140221 Score = 77.8 bits (39), Expect = 2e-10 Identities = 93/111 (83%) Strand = Plus / Minus Query: 1582 tcaaaaagttactccaagaagaggaagcaagaaccacaaatacaaaattcacatgcctcg 1641 ||||||||||| ||||||||||||||||||||| || | |||||||| ||||| ||| Sbjct: 137162 tcaaaaagttattccaagaagaggaagcaagaaacagattcacaaaatttacatgtctcc 137103 Query: 1642 ggtttggagaaagcagcaatcagcccaaagaaaatgaaaacctcttccatg 1692 |||| || ||| ||| ||||||||| ||||||| ||||| ||||||||| Sbjct: 137102 ggttcagacaaaacagtaatcagccctaagaaaaggaaaagttcttccatg 137052 Score = 63.9 bits (32), Expect = 3e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 542 tgcaacttgttaccgtggtctcttgtacttccatgtctgatctatttgtgag 593 |||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct: 140948 tgcaacttgttattatagtctcttgtacttccatgtctgatttatttgtgag 140897 Score = 58.0 bits (29), Expect = 2e-04 Identities = 86/105 (81%) Strand = Plus / Minus Query: 851 taccttctgtccgggtatctgaaggcaattggtcattgatgattcagaaagtgctgatgg 910 ||||||||||||| |||||||| | | |||||||||||||||||| || | || || | Sbjct: 138889 taccttctgtccgagtatctgaggagagttggtcattgatgattcaaaagatactaattg 138830 Query: 911 gtataaacaatcttctgaacgatgcttttgttgggctggaagaag 955 |||| |||||| |||| ||||| ||| ||||||||||||||| Sbjct: 138829 tggtaaataatcttttgaatgatgcatttattgggctggaagaag 138785 Score = 46.1 bits (23), Expect = 0.77 Identities = 71/87 (81%) Strand = Plus / Minus Query: 1718 ctgaaactccaggagatgttagaatgttcacaccactctgtgttaaagtggctgcactag 1777 |||||||| ||| |||||||||||||| || ||||||| ||| ||| | || || || | Sbjct: 137041 ctgaaactacagctgatgttagaatgttgactccactctctgtgaaactagcagctcttg 136982 Query: 1778 aaaccttggaaattcttctgaatgtgg 1804 |||| |||||||||| || ||||||| Sbjct: 136981 aaacgctggaaattctacttaatgtgg 136955 Score = 44.1 bits (22), Expect = 3.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2255 cttatgatgattggttgccatccatcaagg 2284 ||||||||||||||||| |||||| ||||| Sbjct: 134581 cttatgatgattggttgacatccaccaagg 134552
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 163 bits (82), Expect = 5e-36 Identities = 148/170 (87%) Strand = Plus / Minus Query: 1162 cgtgctttgatagctctgtcacggagagtgctcttagtcgatggatcattgcgcaacaag 1221 ||||||||||||||| || |||||||||| || | ||| ||||| ||||||| || ||| Sbjct: 12977864 cgtgctttgatagctttgacacggagagttctgtcagttgatgggtcattgcataaaaag 12977805 Query: 1222 tcgttcccttcaactacgtccttgcaccaagagcttatttgttttgagcttccattattg 1281 | ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 12977804 ttattcccttcaacaacttccttgcaccaagagcttatttgttttgagcttccatcattg 12977745 Query: 1282 cattcatctttcttggatttgctccatgcaactattaaagggatgcgaag 1331 ||||| ||||||||||||||||| |||||| || ||||| |||||||| Sbjct: 12977744 cattctactttcttggatttgctcagtgcaacaataaaaggaatgcgaag 12977695 Score = 135 bits (68), Expect = 1e-27 Identities = 166/198 (83%), Gaps = 3/198 (1%) Strand = Plus / Minus Query: 954 agaaaagaaagggcgtgagattatgatgctcctagttccacctggtaatgatcctccgcc 1013 |||||||||||| | ||||||| | ||| | |||||||||||||| ||||||||||| | Sbjct: 12978167 agaaaagaaaggccatgagattctaatgttactagttccacctggaaatgatcctccact 12978108 Query: 1014 agtgttgggagatcaagtaaaattg---ggaggcaatttgcatgtgacaaagaaatttcg 1070 | || ||||||||||| ||| | | ||||| ||| ||||||| |||||||||||||| Sbjct: 12978107 aatgctgggagatcaaacaaagtggtctggaggaaatgtgcatgtcacaaagaaatttcg 12978048 Query: 1071 tgtcttcacggttcctaccatttcagcccttgcccattgctgctgcatgatgctgactag 1130 ||||| || |||||||| ||||||| |||| ||||||||||| ||||||||||||| Sbjct: 12978047 tgtctatactgttcctactatttcagtccttattcattgctgctgtgtgatgctgactag 12977988 Query: 1131 ttattacccagttcaggt 1148 |||||| ||||||||||| Sbjct: 12977987 ttattatccagttcaggt 12977970 Score = 131 bits (66), Expect = 2e-26 Identities = 81/86 (94%) Strand = Plus / Minus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 12975581 ggggggttcactgaggacagatcactggagggcagaggtggacttgctcctaattaacat 12975522 Query: 1863 agctacaagtgcttgcgactcaggag 1888 ||||| ||||||||| ||| |||||| Sbjct: 12975521 agctagaagtgcttgtgacacaggag 12975496 Score = 129 bits (65), Expect = 7e-26 Identities = 83/89 (93%) Strand = Plus / Minus Query: 604 tttttgaacttaaagaaagaggcatcatcctttgctggaagagttgttgaaccattgctg 663 ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| Sbjct: 12979914 tttttgaacttaaagaaagaggcatcatcatttgctggaagacttgttgaacctgtgctg 12979855 Query: 664 ctgcttttaaatgaaaatggtccagtggc 692 ||||||||||||| |||||||| |||||| Sbjct: 12979854 ctgcttttaaatggaaatggtcaagtggc 12979826 Score = 121 bits (61), Expect = 2e-23 Identities = 127/149 (85%) Strand = Plus / Minus Query: 2041 aagctagagataggcactacgctcgcagagttttgttcgcatgccttgctggctttggat 2100 ||||||||||||||||||| ||| ||||| |||||||| ||||| ||||||||||||||| Sbjct: 12974249 aagctagagataggcactaagcttgcagaattttgttcacatgctttgctggctttggat 12974190 Query: 2101 gttcttacgcaccctcgagccctttctctagaaaaggcaggtcctttagttcctgcactc 2160 || ||||| || |||||||| ||||||||||||| |||| ||||| || |||| |||| Sbjct: 12974189 gtccttacacatcctcgagcactttctctagaaagtgcagctccttcaggccctggactc 12974130 Query: 2161 aaccgcagtgaaccagaaaaggcaatttt 2189 | | | ||| ||| |||||||||||||| Sbjct: 12974129 acctacggtgcacctgaaaaggcaatttt 12974101 Score = 117 bits (59), Expect = 3e-22 Identities = 104/119 (87%) Strand = Plus / Minus Query: 411 gccatacagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcag 470 ||||||||||||||||||||| ||||| ||||| || |||| |||||||||||| ||| Sbjct: 12981090 gccatacagttgttggttgggtacttgctttctcggtctgacgttccaagagtgctgcaa 12981031 Query: 471 tgagcgctttgctgaatcatactctgattggtttgagaagattctgaggaacttgcagg 529 |||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||| Sbjct: 12981030 tgagcgctttgcagaatcatactccagttggtttgagaaaattcttagtaacttgcagg 12980972 Score = 111 bits (56), Expect = 2e-20 Identities = 103/118 (87%), Gaps = 3/118 (2%) Strand = Plus / Minus Query: 1918 ggggagacaagcatatcagactttcgacttgcttcattgaaggcattgctggcatctttt 1977 ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| Sbjct: 12975463 ggggagacaagcatagcagacttccagcttgcttcattgaaggcattgttggcatctttt 12975404 Query: 1978 ctctcgtctcctcatgcctggccactttatttagcccaaggaactgaactcttcagaa 2035 || ||| |||||||| | || | ||||||||||||||||| |||||||||||||| Sbjct: 12975403 ct---ttcttctcatgcccgccctccttatttagcccaaggaattgaactcttcagaa 12975349 Score = 93.7 bits (47), Expect = 4e-15 Identities = 110/131 (83%) Strand = Plus / Minus Query: 1330 agccaacttttaccgcatggtgctaatattgtacggcttgtaactgattacttcaaaatt 1389 ||||||||||| || |||| |||||||||||| ||||| ||||| | ||||| |||| Sbjct: 12977406 agccaacttttgccacatgctgctaatattgttcggctcataactaagtactttgaaata 12977347 Query: 1390 gcaaagttgcctactacgaggacaaaagcttacagcattgttcagctgttgctgacctcc 1449 || |||||| |||||| ||||||||||| ||| ||||||| |||| ||||||||| ||| Sbjct: 12977346 gcgaagttgtctactatgaggacaaaagtatacggcattgtgcagcagttgctgacatcc 12977287 Query: 1450 atgggtgttgg 1460 ||||| ||||| Sbjct: 12977286 atgggcgttgg 12977276 Score = 85.7 bits (43), Expect = 9e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 693 ggatgaagcgattgatttgctaaggacagttattaaattgtatccctcatctgttaatcg 752 ||||||||| |||||||||| |||||||||||||||||||| || |||||| | ||||| Sbjct: 12979749 ggatgaagcagttgatttgctgaggacagttattaaattgtacccatcatctttaaatcg 12979690 Query: 753 acactacaataaagt 767 ||| ||||||||||| Sbjct: 12979689 acattacaataaagt 12979675 Score = 77.8 bits (39), Expect = 2e-10 Identities = 93/111 (83%) Strand = Plus / Minus Query: 1582 tcaaaaagttactccaagaagaggaagcaagaaccacaaatacaaaattcacatgcctcg 1641 ||||||||||| ||||||||||||||||||||| || | |||||||| ||||| ||| Sbjct: 12976616 tcaaaaagttattccaagaagaggaagcaagaaacagattcacaaaatttacatgtctcc 12976557 Query: 1642 ggtttggagaaagcagcaatcagcccaaagaaaatgaaaacctcttccatg 1692 |||| || ||| ||| ||||||||| ||||||| ||||| ||||||||| Sbjct: 12976556 ggttcagacaaaacagtaatcagccctaagaaaaggaaaagttcttccatg 12976506 Score = 63.9 bits (32), Expect = 3e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 542 tgcaacttgttaccgtggtctcttgtacttccatgtctgatctatttgtgag 593 |||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct: 12980402 tgcaacttgttattatagtctcttgtacttccatgtctgatttatttgtgag 12980351 Score = 63.9 bits (32), Expect = 3e-06 Identities = 44/48 (91%) Strand = Plus / Minus Query: 337 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgc 384 |||||||||||||||||||| ||| | |||||||| |||||||||||| Sbjct: 12982044 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgc 12981997 Score = 61.9 bits (31), Expect = 1e-05 Identities = 115/143 (80%) Strand = Plus / Minus Query: 163 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 222 |||||||| |||| ||||||| |||||| ||||| || ||||| || | |||||| ||| Sbjct: 12982218 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 12982159 Query: 223 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 282 |||||| ||||| ||| |||| | | | | ||||| |||||| |||||||| |||| Sbjct: 12982158 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 12982099 Query: 283 gcggtgcgcacgcacggtctcct 305 |||||||||||||| || ||||| Sbjct: 12982098 gcggtgcgcacgcatggcctcct 12982076 Score = 58.0 bits (29), Expect = 2e-04 Identities = 86/105 (81%) Strand = Plus / Minus Query: 851 taccttctgtccgggtatctgaaggcaattggtcattgatgattcagaaagtgctgatgg 910 ||||||||||||| |||||||| | | |||||||||||||||||| || | || || | Sbjct: 12978343 taccttctgtccgagtatctgaggagagttggtcattgatgattcaaaagatactaattg 12978284 Query: 911 gtataaacaatcttctgaacgatgcttttgttgggctggaagaag 955 |||| |||||| |||| ||||| ||| ||||||||||||||| Sbjct: 12978283 tggtaaataatcttttgaatgatgcatttattgggctggaagaag 12978239 Score = 46.1 bits (23), Expect = 0.77 Identities = 71/87 (81%) Strand = Plus / Minus Query: 1718 ctgaaactccaggagatgttagaatgttcacaccactctgtgttaaagtggctgcactag 1777 |||||||| ||| |||||||||||||| || ||||||| ||| ||| | || || || | Sbjct: 12976495 ctgaaactacagctgatgttagaatgttgactccactctctgtgaaactagcagctcttg 12976436 Query: 1778 aaaccttggaaattcttctgaatgtgg 1804 |||| |||||||||| || ||||||| Sbjct: 12976435 aaacgctggaaattctacttaatgtgg 12976409 Score = 44.1 bits (22), Expect = 3.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2255 cttatgatgattggttgccatccatcaagg 2284 ||||||||||||||||| |||||| ||||| Sbjct: 12974035 cttatgatgattggttgacatccaccaagg 12974006
>ref|NM_001064112.1| Oryza sativa (japonica cultivar-group) Os06g0343900 (Os06g0343900) mRNA, complete cds Length = 2521 Score = 67.9 bits (34), Expect = 2e-07 Identities = 46/50 (92%) Strand = Plus / Plus Query: 749 atcgacactacaataaagttgaatccaccattgcagcaaagattatgagt 798 |||| |||| ||| ||||||||||||| |||||||||||||||||||||| Sbjct: 694 atcggcacttcaacaaagttgaatccatcattgcagcaaagattatgagt 743 Score = 44.1 bits (22), Expect = 3.0 Identities = 79/98 (80%) Strand = Plus / Plus Query: 416 acagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcagtgagc 475 ||||||||||| |||| |||| ||||||||| |||| || |||||||||| || | Sbjct: 361 acagttgttgggtgggcacttcttttcttggtttgacatttgaagagtgcagtgaggacc 420 Query: 476 gctttgctgaatcatactctgattggtttgagaagatt 513 ||||||| | ||||||||| ||||||||||||||| Sbjct: 421 gctttgcaaactcatactctttctggtttgagaagatt 458 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1280 tgcattcatctttcttggattt 1301 |||||||||||||||||||||| Sbjct: 1188 tgcattcatctttcttggattt 1209
>dbj|AK070940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066I09, full insert sequence Length = 2522 Score = 67.9 bits (34), Expect = 2e-07 Identities = 46/50 (92%) Strand = Plus / Plus Query: 749 atcgacactacaataaagttgaatccaccattgcagcaaagattatgagt 798 |||| |||| ||| ||||||||||||| |||||||||||||||||||||| Sbjct: 695 atcggcacttcaacaaagttgaatccatcattgcagcaaagattatgagt 744 Score = 44.1 bits (22), Expect = 3.0 Identities = 79/98 (80%) Strand = Plus / Plus Query: 416 acagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcagtgagc 475 ||||||||||| |||| |||| ||||||||| |||| || |||||||||| || | Sbjct: 362 acagttgttgggtgggcacttcttttcttggtttgacatttgaagagtgcagtgaggacc 421 Query: 476 gctttgctgaatcatactctgattggtttgagaagatt 513 ||||||| | ||||||||| ||||||||||||||| Sbjct: 422 gctttgcaaactcatactctttctggtttgagaagatt 459 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1280 tgcattcatctttcttggattt 1301 |||||||||||||||||||||| Sbjct: 1189 tgcattcatctttcttggattt 1210
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Minus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 55954 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 55895 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 55894 cagatccctcggcat 55880
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Minus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 56004 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 55945 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 55944 cagatccctcggcat 55930
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Minus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 56004 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 55945 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 55944 cagatccctcggcat 55930
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Minus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 56499 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 56440 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 56439 cagatccctcggcat 56425
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Plus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 20578963 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 20579022 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 20579023 cagatccctcggcat 20579037
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Plus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 1477645 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 1477704 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 1477705 cagatccctcggcat 1477719
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Plus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 95758 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 95817 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 95818 cagatccctcggcat 95832
>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0018I03 Length = 145818 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Plus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 5889 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 5948 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 5949 cagatccctcggcat 5963
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 61.9 bits (31), Expect = 1e-05 Identities = 62/75 (82%) Strand = Plus / Minus Query: 2767 tattgagcttccttcaaggataaacgtatacccttgcnnnnnnnngcccatctttatcag 2826 |||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 14270 tattgagcctccttcaaggataaacatatacccttgccttttttcgtccatctttatcag 14211 Query: 2827 catatcccttggcat 2841 || |||||| ||||| Sbjct: 14210 cagatccctcggcat 14196
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 58.0 bits (29), Expect = 2e-04 Identities = 32/33 (96%) Strand = Plus / Minus Query: 766 gttgaatccaccattgcagcaaagattatgagt 798 |||||||||| |||||||||||||||||||||| Sbjct: 13603241 gttgaatccatcattgcagcaaagattatgagt 13603209 Score = 48.1 bits (24), Expect = 0.19 Identities = 30/32 (93%) Strand = Plus / Minus Query: 2071 ttttgttcgcatgccttgctggctttggatgt 2102 |||||||| ||||| ||||||||||||||||| Sbjct: 13594119 ttttgttcacatgctttgctggctttggatgt 13594088 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1280 tgcattcatctttcttggattt 1301 |||||||||||||||||||||| Sbjct: 13602449 tgcattcatctttcttggattt 13602428 Score = 44.1 bits (22), Expect = 3.0 Identities = 79/98 (80%) Strand = Plus / Minus Query: 416 acagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcagtgagc 475 ||||||||||| |||| |||| ||||||||| |||| || |||||||||| || | Sbjct: 13607488 acagttgttgggtgggcacttcttttcttggtttgacatttgaagagtgcagtgaggacc 13607429 Query: 476 gctttgctgaatcatactctgattggtttgagaagatt 513 ||||||| | ||||||||| ||||||||||||||| Sbjct: 13607428 gctttgcaaactcatactctttctggtttgagaagatt 13607391
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 58.0 bits (29), Expect = 2e-04 Identities = 32/33 (96%) Strand = Plus / Minus Query: 766 gttgaatccaccattgcagcaaagattatgagt 798 |||||||||| |||||||||||||||||||||| Sbjct: 10574 gttgaatccatcattgcagcaaagattatgagt 10542 Score = 48.1 bits (24), Expect = 0.19 Identities = 30/32 (93%) Strand = Plus / Minus Query: 2071 ttttgttcgcatgccttgctggctttggatgt 2102 |||||||| ||||| ||||||||||||||||| Sbjct: 1452 ttttgttcacatgctttgctggctttggatgt 1421 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1280 tgcattcatctttcttggattt 1301 |||||||||||||||||||||| Sbjct: 9782 tgcattcatctttcttggattt 9761 Score = 44.1 bits (22), Expect = 3.0 Identities = 79/98 (80%) Strand = Plus / Minus Query: 416 acagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcagtgagc 475 ||||||||||| |||| |||| ||||||||| |||| || |||||||||| || | Sbjct: 14821 acagttgttgggtgggcacttcttttcttggtttgacatttgaagagtgcagtgaggacc 14762 Query: 476 gctttgctgaatcatactctgattggtttgagaagatt 513 ||||||| | ||||||||| ||||||||||||||| Sbjct: 14761 gctttgcaaactcatactctttctggtttgagaagatt 14724
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 58.0 bits (29), Expect = 2e-04 Identities = 32/33 (96%) Strand = Plus / Minus Query: 766 gttgaatccaccattgcagcaaagattatgagt 798 |||||||||| |||||||||||||||||||||| Sbjct: 131731 gttgaatccatcattgcagcaaagattatgagt 131699 Score = 48.1 bits (24), Expect = 0.19 Identities = 30/32 (93%) Strand = Plus / Minus Query: 2071 ttttgttcgcatgccttgctggctttggatgt 2102 |||||||| ||||| ||||||||||||||||| Sbjct: 122609 ttttgttcacatgctttgctggctttggatgt 122578 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1280 tgcattcatctttcttggattt 1301 |||||||||||||||||||||| Sbjct: 130939 tgcattcatctttcttggattt 130918 Score = 44.1 bits (22), Expect = 3.0 Identities = 79/98 (80%) Strand = Plus / Minus Query: 416 acagttgttggttgggaacttgttttcttggcgtgactttccaagagtgcagcagtgagc 475 ||||||||||| |||| |||| ||||||||| |||| || |||||||||| || | Sbjct: 135978 acagttgttgggtgggcacttcttttcttggtttgacatttgaagagtgcagtgaggacc 135919 Query: 476 gctttgctgaatcatactctgattggtttgagaagatt 513 ||||||| | ||||||||| ||||||||||||||| Sbjct: 135918 gctttgcaaactcatactctttctggtttgagaagatt 135881
>gb|DQ984518.1| Sorghum bicolor mitochondrion, complete genome Length = 468628 Score = 54.0 bits (27), Expect = 0.003 Identities = 33/35 (94%) Strand = Plus / Plus Query: 2767 tattgagcttccttcaaggataaacgtataccctt 2801 |||||||| |||||||||||||||| ||||||||| Sbjct: 343980 tattgagcctccttcaaggataaacatataccctt 344014
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||| ||||||| |||| |||| | | ||||| | ||| |||||||||||||||||| Sbjct: 15352367 ggggggctcactgacgacaaatcagttgggggcagagttggccttgctcctaattaacat 15352426 Query: 1863 agctacaagtg 1873 ||||| ||||| Sbjct: 15352427 agctagaagtg 15352437
>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0062G05 Length = 152802 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||| ||||||| |||| |||| | | ||||| | ||| |||||||||||||||||| Sbjct: 137998 ggggggctcactgacgacaaatcagttgggggcagagttggccttgctcctaattaacat 138057 Query: 1863 agctacaagtg 1873 ||||| ||||| Sbjct: 138058 agctagaagtg 138068
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02 Length = 162928 Score = 54.0 bits (27), Expect = 0.003 Identities = 60/71 (84%) Strand = Plus / Plus Query: 1803 ggggggttcactgaggacagatcactggagggcaaaagtggacttgctcctaattaacat 1862 |||||| ||||||| |||| |||| | | ||||| | ||| |||||||||||||||||| Sbjct: 37943 ggggggctcactgacgacaaatcagttgggggcagagttggccttgctcctaattaacat 38002 Query: 1863 agctacaagtg 1873 ||||| ||||| Sbjct: 38003 agctagaagtg 38013
>gb|AC131780.5| Mus musculus BAC clone RP24-340I7 from chromosome 9, complete sequence Length = 176274 Score = 48.1 bits (24), Expect = 0.19 Identities = 24/24 (100%) Strand = Plus / Plus Query: 2262 tgattggttgccatccatcaagga 2285 |||||||||||||||||||||||| Sbjct: 80759 tgattggttgccatccatcaagga 80782
>ref|XM_001235091.1| PREDICTED: Gallus gallus NFKB inhibitor interacting Ras-like 1, transcript variant 1 (NKIRAS1), mRNA Length = 829 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1091 tttcagcccttgcccattgctgc 1113 ||||||||||||||||||||||| Sbjct: 554 tttcagcccttgcccattgctgc 532
>ref|XM_418753.2| PREDICTED: Gallus gallus NFKB inhibitor interacting Ras-like 1, transcript variant 2 (NKIRAS1), mRNA Length = 1072 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1091 tttcagcccttgcccattgctgc 1113 ||||||||||||||||||||||| Sbjct: 813 tttcagcccttgcccattgctgc 791
>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1458 tggaatgtctctccatttgttag 1480 ||||||||||||||||||||||| Sbjct: 103971 tggaatgtctctccatttgttag 103993
>emb|CR385174.1| Gallus gallus finished cDNA, clone ChEST542p9 Length = 1301 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1091 tttcagcccttgcccattgctgc 1113 ||||||||||||||||||||||| Sbjct: 1030 tttcagcccttgcccattgctgc 1008
>emb|BX934410.1| Gallus gallus finished cDNA, clone ChEST48d16 Length = 823 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1091 tttcagcccttgcccattgctgc 1113 ||||||||||||||||||||||| Sbjct: 552 tttcagcccttgcccattgctgc 530
>emb|BX931823.1| Gallus gallus finished cDNA, clone ChEST793b15 Length = 828 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1091 tttcagcccttgcccattgctgc 1113 ||||||||||||||||||||||| Sbjct: 557 tttcagcccttgcccattgctgc 535
>gb|AC139186.4| Mus musculus BAC clone RP24-92D20 from 8, complete sequence Length = 206436 Score = 46.1 bits (23), Expect = 0.77 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2262 tgattggttgccatccatcaagg 2284 ||||||||||||||||||||||| Sbjct: 29095 tgattggttgccatccatcaagg 29117
>dbj|AK242686.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090033M17, full insert sequence Length = 3535 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2014 caaggaactgaactcttcagaaaagg 2039 |||| ||||||||||||||||||||| Sbjct: 399 caagcaactgaactcttcagaaaagg 374
>emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chromosome 9, complete sequence Length = 193236 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 810 tgtaaaattatcaaagaaattt 831 |||||||||||||||||||||| Sbjct: 77636 tgtaaaattatcaaagaaattt 77615
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 340 ctcgccgaggcgtggcgcgccacggt 365 |||||||||||||||||||| ||||| Sbjct: 113706 ctcgccgaggcgtggcgcgcgacggt 113731
>gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosome 9, complete sequence Length = 226149 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 810 tgtaaaattatcaaagaaattt 831 |||||||||||||||||||||| Sbjct: 133333 tgtaaaattatcaaagaaattt 133312
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 ctcgccgaggcgtggcgcgccacggt 365 |||||||||||||||||||| ||||| Sbjct: 3976 ctcgccgaggcgtggcgcgcgacggt 3951
>gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome 14, complete sequence Length = 208634 Score = 44.1 bits (22), Expect = 3.0 Identities = 31/34 (91%) Strand = Plus / Minus Query: 1972 tcttttctctcgtctcctcatgcctggccacttt 2005 ||||||||||| ||||||||||||| ||||||| Sbjct: 136841 tcttttctctcctctcctcatgcctcaccacttt 136808
>gb|AC003959.1| Homo sapiens chromosome 5, P1 clone 1029A7 (LBNL H15), complete sequence Length = 83684 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 tggtttgagaagattctgagga 520 |||||||||||||||||||||| Sbjct: 68022 tggtttgagaagattctgagga 68001
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2549 ttgattctctggttcagaatac 2570 |||||||||||||||||||||| Sbjct: 4708487 ttgattctctggttcagaatac 4708508
>gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, complete sequence Length = 152435 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 602 aatttttgaacttaaagaaaga 623 |||||||||||||||||||||| Sbjct: 80965 aatttttgaacttaaagaaaga 80944
>gb|AC114652.7| Mus musculus chromosome 18, clone RP24-156O17, complete sequence Length = 148737 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1600 aagaggaagcaagaaccacaaa 1621 |||||||||||||||||||||| Sbjct: 60624 aagaggaagcaagaaccacaaa 60645
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2014 caaggaactgaactcttcagaaaagg 2039 |||| ||||||||||||||||||||| Sbjct: 3615842 caagcaactgaactcttcagaaaagg 3615817
>gb|L81752.1|HUM15DC95S Homo sapiens (subclone 8_d10 from P1 H15) DNA sequence Length = 4452 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 tggtttgagaagattctgagga 520 |||||||||||||||||||||| Sbjct: 254 tggtttgagaagattctgagga 233
>gb|L81753.1|HUM15DC24S Homo sapiens (subclone 5_h5 from P1 H15) DNA sequence Length = 3634 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 tggtttgagaagattctgagga 520 |||||||||||||||||||||| Sbjct: 305 tggtttgagaagattctgagga 284
>gb|AC159811.2| Mus musculus BAC clone RP24-127J13 from chromosome 9, complete sequence Length = 134895 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1660 atcagcccaaagaaaatgaaaa 1681 |||||||||||||||||||||| Sbjct: 3128 atcagcccaaagaaaatgaaaa 3107
>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence Length = 253762 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1660 atcagcccaaagaaaatgaaaa 1681 |||||||||||||||||||||| Sbjct: 43815 atcagcccaaagaaaatgaaaa 43836
>gb|AC007097.4|AC007097 Homo sapiens BAC clone RP11-332E22 from 7q35-q36, complete sequence Length = 142830 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2183 caatttttggtgctggcacatt 2204 |||||||||||||||||||||| Sbjct: 59070 caatttttggtgctggcacatt 59091
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2014 caaggaactgaactcttcagaaaagg 2039 |||| ||||||||||||||||||||| Sbjct: 85159 caagcaactgaactcttcagaaaagg 85134
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 44.1 bits (22), Expect = 3.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2014 caaggaactgaactcttcagaaaagg 2039 |||| ||||||||||||||||||||| Sbjct: 153792 caagcaactgaactcttcagaaaagg 153767
>dbj|BS000085.1| Pan troglodytes chromosome 22 clone:RP43-164H01, map 22, complete sequences Length = 171357 Score = 44.1 bits (22), Expect = 3.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 793 atgagtacagaagtcaatgtaa 814 |||||||||||||||||||||| Sbjct: 84960 atgagtacagaagtcaatgtaa 84981 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 593,988,453 Number of extensions: 32160575 Number of successful extensions: 178606 Number of sequences better than 10.0: 50 Number of HSP's gapped: 178596 Number of HSP's successfully gapped: 127 Length of query: 3126 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 3103 Effective length of database: 18,503,978,556 Effective search space: 57417845459268 Effective search space used: 57417845459268 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
