ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf169a18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049016.1| Oryza sativa (japonica cultivar-group) Os01g0228800 (Os01g0228800) mRNA, partial cds Length = 2644 Score = 174 bits (88), Expect = 1e-39 Identities = 255/310 (82%), Gaps = 3/310 (0%) Strand = Plus / Plus Query: 1544 ataggaagggagaaaggaggaaggatgtgaaggctaagacagcatcagcatctcacacta 1603 ||||||| ||||| ||||||||||| ||| |||| |||| ||||||||||| ||| Sbjct: 1382 ataggaacagagaagggaggaaggataccaagtctaaaacaggatcagcatctcggtcta 1441 Query: 1604 atgctaaactagtgaaaaagactgataagaaatcagt---tgcatcaagtagcaatcctt 1660 |||||| |||||||| | |||||||||||||| | |||||||||||||| ||| Sbjct: 1442 gtgctaatacagtgaaaaggcctgataagaaatcaatgattgcatcaagtagcagctctt 1501 Query: 1661 caacatgccgtacaatgaagccggtcttacgaagaacacctggtagttctagagagaaga 1720 ||||||| || |||| |||||||||| ||| | | ||||| ||| ||| || |||||| Sbjct: 1502 caacatgtcgcacaaggaagccggtcgcacgtaaagcacctagtaattcgagggagaagg 1561 Query: 1721 tagtgtcaagtagaaacatcaataacccaactattgatgacatagtggcatatgaggtgc 1780 |||||| ||||||| ||| ||| |||||||||||||||| |||||||||||| ||| Sbjct: 1562 cagtgtccagtagaagtcgcaagaactcaactattgatgacattgtggcatatgagctgc 1621 Query: 1781 acagagagttcatccaaactgattgtccatccacagaacatagtgcgacacctagtgatg 1840 ||||||||||||| ||| |||| |||||||||| |||||||| || ||||||||||||| Sbjct: 1622 acagagagttcatacaagttgatggtccatccactgaacatagcgcaacacctagtgatg 1681 Query: 1841 aaagctgcca 1850 |||||||||| Sbjct: 1682 aaagctgcca 1691 Score = 95.6 bits (48), Expect = 8e-16 Identities = 230/291 (79%), Gaps = 6/291 (2%) Strand = Plus / Plus Query: 320 aatgcagcaagacagtttcagatcagtggtttgcaggtccctttcaaagagtcatccctc 379 |||||| |||||||||||||| || ||||||||||| |||||||||||||||| | | Sbjct: 315 aatgcatcaagacagtttcaggtcggtggtttgcagatccctttcaaagagtctttc--- 371 Query: 380 cagctccaggagcaaagatggcagctatcctgaaagaactcagcgtgatgtcccttatgt 439 ||||| | |||||| ||||||| ||||||| | |||| ||| |||||||| ||| Sbjct: 372 ---ctccaaaaccaaagagagcagctaccctgaaatagctcaatgtgctgtcccttgtgt 428 Query: 440 tgtcacactgcaacccacagtctgccggagctgccaaagccaggattggcgccccacaca 499 ||||||| ||||||| || || || || |||||||| ||| ||||||| |||| |||| Sbjct: 429 tgtcacattgcaacctacggtttgtcgaggctgccaaggccgggattggagcccatcaca 488 Query: 500 gagcagccgggaggagaggtccatcttctcgcgaagagattatgtgatgggttccacact 559 |||| | ||||||| | |||||| | | || | |||||| |||||| ||| | || Sbjct: 489 aagcaacagggaggatatgtccatgatgttgcagaaagattacctgatggcatcctcgct 548 Query: 560 ctcgaggcattttgctgaggacctcctaagaggcgctatgaacctccagga 610 |||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct: 549 ctcgaggcgcttcgcggaggacctcctaagaggagccatggacctccagga 599 Score = 63.9 bits (32), Expect = 3e-06 Identities = 104/128 (81%) Strand = Plus / Plus Query: 738 gaagcatcaatcgccaagaagctggtccctggaagtgtcagcaatagattcgatgggcaa 797 ||||| |||| |||||||||| |||| | |||| | ||||| | |||| |||||| || Sbjct: 724 gaagcgtcaaacgccaagaagatggtgggtagaagcgccagcagtggattggatggggaa 783 Query: 798 ctaaggagttctaccgacgagctgaagagagtgatcaaggacagcctttacagggcgaac 857 ||| || |||||| || |||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 784 ttaacgaattctactgatgagctgaaaagagtgatcaaggatagcttttacaggaagaac 843 Query: 858 ctcttgtc 865 ||||||| Sbjct: 844 atcttgtc 851 Score = 58.0 bits (29), Expect = 2e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 1972 gaagttgaaacaaaagatgagatgagtttgcttctcctaag 2012 |||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 1849 gaagttgaaataaaagacgagatgagtctgcttctcctaag 1889 Score = 56.0 bits (28), Expect = 7e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 2149 gagcaactggaacgaaaacatcgtcagcagaatagcctgtattacactggattcaggacc 2208 ||||| ||||| || || |||||||||| || ||| ||| |||||| ||| | ||| | Sbjct: 2020 gagcagctggagcggaagcatcgtcagcgaaacagcttgtgttacacaggaatttggagc 2079 Query: 2209 cagaaatgcggagcaacaccgtacttctccctggaggcattgct 2252 ||||||||| || || |||| |||||||| |||||||||||||| Sbjct: 2080 cagaaatgcagaacagcaccatacttctcactggaggcattgct 2123 Score = 44.1 bits (22), Expect = 2.7 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2375 cgtcgatcaacagcgcgtgggacatggggtggcaggactggatctgcatggacgaaac 2432 ||||||||||||||| |||||| ||||| ||| | || ||||| | |||||| ||||| Sbjct: 2240 cgtcgatcaacagcgtgtgggatatgggctgggaagattggattttcatggaggaaac 2297
>dbj|AK065657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042E14, full insert sequence Length = 2647 Score = 174 bits (88), Expect = 1e-39 Identities = 255/310 (82%), Gaps = 3/310 (0%) Strand = Plus / Plus Query: 1544 ataggaagggagaaaggaggaaggatgtgaaggctaagacagcatcagcatctcacacta 1603 ||||||| ||||| ||||||||||| ||| |||| |||| ||||||||||| ||| Sbjct: 1385 ataggaacagagaagggaggaaggataccaagtctaaaacaggatcagcatctcggtcta 1444 Query: 1604 atgctaaactagtgaaaaagactgataagaaatcagt---tgcatcaagtagcaatcctt 1660 |||||| |||||||| | |||||||||||||| | |||||||||||||| ||| Sbjct: 1445 gtgctaatacagtgaaaaggcctgataagaaatcaatgattgcatcaagtagcagctctt 1504 Query: 1661 caacatgccgtacaatgaagccggtcttacgaagaacacctggtagttctagagagaaga 1720 ||||||| || |||| |||||||||| ||| | | ||||| ||| ||| || |||||| Sbjct: 1505 caacatgtcgcacaaggaagccggtcgcacgtaaagcacctagtaattcgagggagaagg 1564 Query: 1721 tagtgtcaagtagaaacatcaataacccaactattgatgacatagtggcatatgaggtgc 1780 |||||| ||||||| ||| ||| |||||||||||||||| |||||||||||| ||| Sbjct: 1565 cagtgtccagtagaagtcgcaagaactcaactattgatgacattgtggcatatgagctgc 1624 Query: 1781 acagagagttcatccaaactgattgtccatccacagaacatagtgcgacacctagtgatg 1840 ||||||||||||| ||| |||| |||||||||| |||||||| || ||||||||||||| Sbjct: 1625 acagagagttcatacaagttgatggtccatccactgaacatagcgcaacacctagtgatg 1684 Query: 1841 aaagctgcca 1850 |||||||||| Sbjct: 1685 aaagctgcca 1694 Score = 95.6 bits (48), Expect = 8e-16 Identities = 230/291 (79%), Gaps = 6/291 (2%) Strand = Plus / Plus Query: 320 aatgcagcaagacagtttcagatcagtggtttgcaggtccctttcaaagagtcatccctc 379 |||||| |||||||||||||| || ||||||||||| |||||||||||||||| | | Sbjct: 318 aatgcatcaagacagtttcaggtcggtggtttgcagatccctttcaaagagtctttc--- 374 Query: 380 cagctccaggagcaaagatggcagctatcctgaaagaactcagcgtgatgtcccttatgt 439 ||||| | |||||| ||||||| ||||||| | |||| ||| |||||||| ||| Sbjct: 375 ---ctccaaaaccaaagagagcagctaccctgaaatagctcaatgtgctgtcccttgtgt 431 Query: 440 tgtcacactgcaacccacagtctgccggagctgccaaagccaggattggcgccccacaca 499 ||||||| ||||||| || || || || |||||||| ||| ||||||| |||| |||| Sbjct: 432 tgtcacattgcaacctacggtttgtcgaggctgccaaggccgggattggagcccatcaca 491 Query: 500 gagcagccgggaggagaggtccatcttctcgcgaagagattatgtgatgggttccacact 559 |||| | ||||||| | |||||| | | || | |||||| |||||| ||| | || Sbjct: 492 aagcaacagggaggatatgtccatgatgttgcagaaagattacctgatggcatcctcgct 551 Query: 560 ctcgaggcattttgctgaggacctcctaagaggcgctatgaacctccagga 610 |||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct: 552 ctcgaggcgcttcgcggaggacctcctaagaggagccatggacctccagga 602 Score = 63.9 bits (32), Expect = 3e-06 Identities = 104/128 (81%) Strand = Plus / Plus Query: 738 gaagcatcaatcgccaagaagctggtccctggaagtgtcagcaatagattcgatgggcaa 797 ||||| |||| |||||||||| |||| | |||| | ||||| | |||| |||||| || Sbjct: 727 gaagcgtcaaacgccaagaagatggtgggtagaagcgccagcagtggattggatggggaa 786 Query: 798 ctaaggagttctaccgacgagctgaagagagtgatcaaggacagcctttacagggcgaac 857 ||| || |||||| || |||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 787 ttaacgaattctactgatgagctgaaaagagtgatcaaggatagcttttacaggaagaac 846 Query: 858 ctcttgtc 865 ||||||| Sbjct: 847 atcttgtc 854 Score = 58.0 bits (29), Expect = 2e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 1972 gaagttgaaacaaaagatgagatgagtttgcttctcctaag 2012 |||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 1852 gaagttgaaataaaagacgagatgagtctgcttctcctaag 1892 Score = 56.0 bits (28), Expect = 7e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 2149 gagcaactggaacgaaaacatcgtcagcagaatagcctgtattacactggattcaggacc 2208 ||||| ||||| || || |||||||||| || ||| ||| |||||| ||| | ||| | Sbjct: 2023 gagcagctggagcggaagcatcgtcagcgaaacagcttgtgttacacaggaatttggagc 2082 Query: 2209 cagaaatgcggagcaacaccgtacttctccctggaggcattgct 2252 ||||||||| || || |||| |||||||| |||||||||||||| Sbjct: 2083 cagaaatgcagaacagcaccatacttctcactggaggcattgct 2126 Score = 44.1 bits (22), Expect = 2.7 Identities = 49/58 (84%) Strand = Plus / Plus Query: 2375 cgtcgatcaacagcgcgtgggacatggggtggcaggactggatctgcatggacgaaac 2432 ||||||||||||||| |||||| ||||| ||| | || ||||| | |||||| ||||| Sbjct: 2243 cgtcgatcaacagcgtgtgggatatgggctgggaagattggattttcatggaggaaac 2300
>dbj|AK058920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B09, full insert sequence Length = 319 Score = 133 bits (67), Expect = 4e-27 Identities = 94/103 (91%) Strand = Plus / Plus Query: 1748 caactattgatgacatagtggcatatgaggtgcacagagagttcatccaaactgattgtc 1807 |||||||||||||||| |||||||||||| |||||||||||||||| ||| |||| ||| Sbjct: 67 caactattgatgacattgtggcatatgagctgcacagagagttcatacaagttgatggtc 126 Query: 1808 catccacagaacatagtgcgacacctagtgatgaaagctgcca 1850 ||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 127 catccactgaacatagcgcaacacctagtgatgaaagctgcca 169
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 103 bits (52), Expect = 3e-18 Identities = 76/84 (90%) Strand = Plus / Minus Query: 1767 ggcatatgaggtgcacagagagttcatccaaactgattgtccatccacagaacatagtgc 1826 |||||||||| |||||||||||||||| ||| |||| |||||||||| |||||||| || Sbjct: 7105329 ggcatatgagctgcacagagagttcatacaagttgatggtccatccactgaacatagcgc 7105270 Query: 1827 gacacctagtgatgaaagctgcca 1850 ||||||||||||||||||||||| Sbjct: 7105269 aacacctagtgatgaaagctgcca 7105246 Score = 95.6 bits (48), Expect = 8e-16 Identities = 230/291 (79%), Gaps = 6/291 (2%) Strand = Plus / Minus Query: 320 aatgcagcaagacagtttcagatcagtggtttgcaggtccctttcaaagagtcatccctc 379 |||||| |||||||||||||| || ||||||||||| |||||||||||||||| | | Sbjct: 7106838 aatgcatcaagacagtttcaggtcggtggtttgcagatccctttcaaagagtctttc--- 7106782 Query: 380 cagctccaggagcaaagatggcagctatcctgaaagaactcagcgtgatgtcccttatgt 439 ||||| | |||||| ||||||| ||||||| | |||| ||| |||||||| ||| Sbjct: 7106781 ---ctccaaaaccaaagagagcagctaccctgaaatagctcaatgtgctgtcccttgtgt 7106725 Query: 440 tgtcacactgcaacccacagtctgccggagctgccaaagccaggattggcgccccacaca 499 ||||||| ||||||| || || || || |||||||| ||| ||||||| |||| |||| Sbjct: 7106724 tgtcacattgcaacctacggtttgtcgaggctgccaaggccgggattggagcccatcaca 7106665 Query: 500 gagcagccgggaggagaggtccatcttctcgcgaagagattatgtgatgggttccacact 559 |||| | ||||||| | |||||| | | || | |||||| |||||| ||| | || Sbjct: 7106664 aagcaacagggaggatatgtccatgatgttgcagaaagattacctgatggcatcctcgct 7106605 Query: 560 ctcgaggcattttgctgaggacctcctaagaggcgctatgaacctccagga 610 |||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct: 7106604 ctcgaggcgcttcgcggaggacctcctaagaggagccatggacctccagga 7106554 Score = 75.8 bits (38), Expect = 8e-10 Identities = 181/228 (79%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 1544 ataggaagggagaaaggaggaaggatgtgaaggctaagacagcatcagcatctcacacta 1603 ||||||| ||||| ||||||||||| ||| |||| |||| ||||||||||| ||| Sbjct: 7105771 ataggaacagagaagggaggaaggataccaagtctaaaacaggatcagcatctcggtcta 7105712 Query: 1604 atgctaaactagtgaaaaagactgataagaaatcagt---tgcatcaagtagcaatcctt 1660 |||||| |||||||| | |||||||||||||| | |||||||||||||| ||| Sbjct: 7105711 gtgctaatacagtgaaaaggcctgataagaaatcaatgattgcatcaagtagcagctctt 7105652 Query: 1661 caacatgccgtacaatgaagccggtcttacgaagaacacctggtagttctagagagaaga 1720 ||||||| || |||| |||||||||| ||| | | ||||| ||| ||| || |||||| Sbjct: 7105651 caacatgtcgcacaaggaagccggtcgcacgtaaagcacctagtaattcgagggagaagg 7105592 Query: 1721 tagtgtcaagtagaaacatcaataacccaactattgatgacatagtgg 1768 |||||| ||||||| ||| ||| |||||||||||||||| |||| Sbjct: 7105591 cagtgtccagtagaagtcgcaagaactcaactattgatgacattgtgg 7105544 Score = 63.9 bits (32), Expect = 3e-06 Identities = 104/128 (81%) Strand = Plus / Minus Query: 738 gaagcatcaatcgccaagaagctggtccctggaagtgtcagcaatagattcgatgggcaa 797 ||||| |||| |||||||||| |||| | |||| | ||||| | |||| |||||| || Sbjct: 7106429 gaagcgtcaaacgccaagaagatggtgggtagaagcgccagcagtggattggatggggaa 7106370 Query: 798 ctaaggagttctaccgacgagctgaagagagtgatcaaggacagcctttacagggcgaac 857 ||| || |||||| || |||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 7106369 ttaacgaattctactgatgagctgaaaagagtgatcaaggatagcttttacaggaagaac 7106310 Query: 858 ctcttgtc 865 ||||||| Sbjct: 7106309 atcttgtc 7106302 Score = 58.0 bits (29), Expect = 2e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 1972 gaagttgaaacaaaagatgagatgagtttgcttctcctaag 2012 |||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 7104496 gaagttgaaataaaagacgagatgagtctgcttctcctaag 7104456 Score = 56.0 bits (28), Expect = 7e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 2149 gagcaactggaacgaaaacatcgtcagcagaatagcctgtattacactggattcaggacc 2208 ||||| ||||| || || |||||||||| || ||| ||| |||||| ||| | ||| | Sbjct: 7104325 gagcagctggagcggaagcatcgtcagcgaaacagcttgtgttacacaggaatttggagc 7104266 Query: 2209 cagaaatgcggagcaacaccgtacttctccctggaggcattgct 2252 ||||||||| || || |||| |||||||| |||||||||||||| Sbjct: 7104265 cagaaatgcagaacagcaccatacttctcactggaggcattgct 7104222 Score = 44.1 bits (22), Expect = 2.7 Identities = 49/58 (84%) Strand = Plus / Minus Query: 2375 cgtcgatcaacagcgcgtgggacatggggtggcaggactggatctgcatggacgaaac 2432 ||||||||||||||| |||||| ||||| ||| | || ||||| | |||||| ||||| Sbjct: 7104105 cgtcgatcaacagcgtgtgggatatgggctgggaagattggattttcatggaggaaac 7104048
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 103 bits (52), Expect = 3e-18 Identities = 76/84 (90%) Strand = Plus / Minus Query: 1767 ggcatatgaggtgcacagagagttcatccaaactgattgtccatccacagaacatagtgc 1826 |||||||||| |||||||||||||||| ||| |||| |||||||||| |||||||| || Sbjct: 92909 ggcatatgagctgcacagagagttcatacaagttgatggtccatccactgaacatagcgc 92850 Query: 1827 gacacctagtgatgaaagctgcca 1850 ||||||||||||||||||||||| Sbjct: 92849 aacacctagtgatgaaagctgcca 92826 Score = 95.6 bits (48), Expect = 8e-16 Identities = 230/291 (79%), Gaps = 6/291 (2%) Strand = Plus / Minus Query: 320 aatgcagcaagacagtttcagatcagtggtttgcaggtccctttcaaagagtcatccctc 379 |||||| |||||||||||||| || ||||||||||| |||||||||||||||| | | Sbjct: 94418 aatgcatcaagacagtttcaggtcggtggtttgcagatccctttcaaagagtctttc--- 94362 Query: 380 cagctccaggagcaaagatggcagctatcctgaaagaactcagcgtgatgtcccttatgt 439 ||||| | |||||| ||||||| ||||||| | |||| ||| |||||||| ||| Sbjct: 94361 ---ctccaaaaccaaagagagcagctaccctgaaatagctcaatgtgctgtcccttgtgt 94305 Query: 440 tgtcacactgcaacccacagtctgccggagctgccaaagccaggattggcgccccacaca 499 ||||||| ||||||| || || || || |||||||| ||| ||||||| |||| |||| Sbjct: 94304 tgtcacattgcaacctacggtttgtcgaggctgccaaggccgggattggagcccatcaca 94245 Query: 500 gagcagccgggaggagaggtccatcttctcgcgaagagattatgtgatgggttccacact 559 |||| | ||||||| | |||||| | | || | |||||| |||||| ||| | || Sbjct: 94244 aagcaacagggaggatatgtccatgatgttgcagaaagattacctgatggcatcctcgct 94185 Query: 560 ctcgaggcattttgctgaggacctcctaagaggcgctatgaacctccagga 610 |||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct: 94184 ctcgaggcgcttcgcggaggacctcctaagaggagccatggacctccagga 94134 Score = 75.8 bits (38), Expect = 8e-10 Identities = 181/228 (79%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 1544 ataggaagggagaaaggaggaaggatgtgaaggctaagacagcatcagcatctcacacta 1603 ||||||| ||||| ||||||||||| ||| |||| |||| ||||||||||| ||| Sbjct: 93351 ataggaacagagaagggaggaaggataccaagtctaaaacaggatcagcatctcggtcta 93292 Query: 1604 atgctaaactagtgaaaaagactgataagaaatcagt---tgcatcaagtagcaatcctt 1660 |||||| |||||||| | |||||||||||||| | |||||||||||||| ||| Sbjct: 93291 gtgctaatacagtgaaaaggcctgataagaaatcaatgattgcatcaagtagcagctctt 93232 Query: 1661 caacatgccgtacaatgaagccggtcttacgaagaacacctggtagttctagagagaaga 1720 ||||||| || |||| |||||||||| ||| | | ||||| ||| ||| || |||||| Sbjct: 93231 caacatgtcgcacaaggaagccggtcgcacgtaaagcacctagtaattcgagggagaagg 93172 Query: 1721 tagtgtcaagtagaaacatcaataacccaactattgatgacatagtgg 1768 |||||| ||||||| ||| ||| |||||||||||||||| |||| Sbjct: 93171 cagtgtccagtagaagtcgcaagaactcaactattgatgacattgtgg 93124 Score = 63.9 bits (32), Expect = 3e-06 Identities = 104/128 (81%) Strand = Plus / Minus Query: 738 gaagcatcaatcgccaagaagctggtccctggaagtgtcagcaatagattcgatgggcaa 797 ||||| |||| |||||||||| |||| | |||| | ||||| | |||| |||||| || Sbjct: 94009 gaagcgtcaaacgccaagaagatggtgggtagaagcgccagcagtggattggatggggaa 93950 Query: 798 ctaaggagttctaccgacgagctgaagagagtgatcaaggacagcctttacagggcgaac 857 ||| || |||||| || |||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 93949 ttaacgaattctactgatgagctgaaaagagtgatcaaggatagcttttacaggaagaac 93890 Query: 858 ctcttgtc 865 ||||||| Sbjct: 93889 atcttgtc 93882 Score = 58.0 bits (29), Expect = 2e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 1972 gaagttgaaacaaaagatgagatgagtttgcttctcctaag 2012 |||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 92076 gaagttgaaataaaagacgagatgagtctgcttctcctaag 92036 Score = 56.0 bits (28), Expect = 7e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 2149 gagcaactggaacgaaaacatcgtcagcagaatagcctgtattacactggattcaggacc 2208 ||||| ||||| || || |||||||||| || ||| ||| |||||| ||| | ||| | Sbjct: 91905 gagcagctggagcggaagcatcgtcagcgaaacagcttgtgttacacaggaatttggagc 91846 Query: 2209 cagaaatgcggagcaacaccgtacttctccctggaggcattgct 2252 ||||||||| || || |||| |||||||| |||||||||||||| Sbjct: 91845 cagaaatgcagaacagcaccatacttctcactggaggcattgct 91802 Score = 44.1 bits (22), Expect = 2.7 Identities = 49/58 (84%) Strand = Plus / Minus Query: 2375 cgtcgatcaacagcgcgtgggacatggggtggcaggactggatctgcatggacgaaac 2432 ||||||||||||||| |||||| ||||| ||| | || ||||| | |||||| ||||| Sbjct: 91685 cgtcgatcaacagcgtgtgggatatgggctgggaagattggattttcatggaggaaac 91628
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 95.6 bits (48), Expect = 8e-16 Identities = 230/291 (79%), Gaps = 6/291 (2%) Strand = Plus / Minus Query: 320 aatgcagcaagacagtttcagatcagtggtttgcaggtccctttcaaagagtcatccctc 379 |||||| |||||||||||||| || ||||||||||| |||||||||||||||| | | Sbjct: 1486 aatgcatcaagacagtttcaggtcggtggtttgcagatccctttcaaagagtctttc--- 1430 Query: 380 cagctccaggagcaaagatggcagctatcctgaaagaactcagcgtgatgtcccttatgt 439 ||||| | |||||| ||||||| ||||||| | |||| ||| |||||||| ||| Sbjct: 1429 ---ctccaaaaccaaagagagcagctaccctgaaatagctcaatgtgctgtcccttgtgt 1373 Query: 440 tgtcacactgcaacccacagtctgccggagctgccaaagccaggattggcgccccacaca 499 ||||||| ||||||| || || || || |||||||| ||| ||||||| |||| |||| Sbjct: 1372 tgtcacattgcaacctacggtttgtcgaggctgccaaggccgggattggagcccatcaca 1313 Query: 500 gagcagccgggaggagaggtccatcttctcgcgaagagattatgtgatgggttccacact 559 |||| | ||||||| | |||||| | | || | |||||| |||||| ||| | || Sbjct: 1312 aagcaacagggaggatatgtccatgatgttgcagaaagattacctgatggcatcctcgct 1253 Query: 560 ctcgaggcattttgctgaggacctcctaagaggcgctatgaacctccagga 610 |||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct: 1252 ctcgaggcgcttcgcggaggacctcctaagaggagccatggacctccagga 1202 Score = 75.8 bits (38), Expect = 8e-10 Identities = 181/228 (79%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 1544 ataggaagggagaaaggaggaaggatgtgaaggctaagacagcatcagcatctcacacta 1603 ||||||| ||||| ||||||||||| ||| |||| |||| ||||||||||| ||| Sbjct: 419 ataggaacagagaagggaggaaggataccaagtctaaaacaggatcagcatctcggtcta 360 Query: 1604 atgctaaactagtgaaaaagactgataagaaatcagt---tgcatcaagtagcaatcctt 1660 |||||| |||||||| | |||||||||||||| | |||||||||||||| ||| Sbjct: 359 gtgctaatacagtgaaaaggcctgataagaaatcaatgattgcatcaagtagcagctctt 300 Query: 1661 caacatgccgtacaatgaagccggtcttacgaagaacacctggtagttctagagagaaga 1720 ||||||| || |||| |||||||||| ||| | | ||||| ||| ||| || |||||| Sbjct: 299 caacatgtcgcacaaggaagccggtcgcacgtaaagcacctagtaattcgagggagaagg 240 Query: 1721 tagtgtcaagtagaaacatcaataacccaactattgatgacatagtgg 1768 |||||| ||||||| ||| ||| |||||||||||||||| |||| Sbjct: 239 cagtgtccagtagaagtcgcaagaactcaactattgatgacattgtgg 192 Score = 63.9 bits (32), Expect = 3e-06 Identities = 104/128 (81%) Strand = Plus / Minus Query: 738 gaagcatcaatcgccaagaagctggtccctggaagtgtcagcaatagattcgatgggcaa 797 ||||| |||| |||||||||| |||| | |||| | ||||| | |||| |||||| || Sbjct: 1077 gaagcgtcaaacgccaagaagatggtgggtagaagcgccagcagtggattggatggggaa 1018 Query: 798 ctaaggagttctaccgacgagctgaagagagtgatcaaggacagcctttacagggcgaac 857 ||| || |||||| || |||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 1017 ttaacgaattctactgatgagctgaaaagagtgatcaaggatagcttttacaggaagaac 958 Query: 858 ctcttgtc 865 ||||||| Sbjct: 957 atcttgtc 950
>gb|AC111378.6| Rattus norvegicus 4 BAC CH230-126E21 (Children's Hospital Oakland Research Institute) complete sequence Length = 171142 Score = 46.1 bits (23), Expect = 0.68 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 agtggtttgcaggtccctttcaa 366 ||||||||||||||||||||||| Sbjct: 82003 agtggtttgcaggtccctttcaa 82025
>gb|AC087251.2| Rattus norvegicus strain Brown Norway clone RP31-186N2, complete sequence Length = 149358 Score = 46.1 bits (23), Expect = 0.68 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 agtggtttgcaggtccctttcaa 366 ||||||||||||||||||||||| Sbjct: 127318 agtggtttgcaggtccctttcaa 127296
>gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12 Length = 112253 Score = 46.1 bits (23), Expect = 0.68 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1229 aggagacgatgaagacaattcaa 1251 ||||||||||||||||||||||| Sbjct: 82899 aggagacgatgaagacaattcaa 82877
>ref|XM_417496.2| PREDICTED: Gallus gallus bone morphogenetic protein 7 (osteogenic protein 1) (BMP7), mRNA Length = 4189 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2393 gggacatggggtggcaggactggatc 2418 ||||| |||||||||||||||||||| Sbjct: 1280 gggacctggggtggcaggactggatc 1305
>ref|NM_001067541.1| Oryza sativa (japonica cultivar-group) Os08g0152700 (Os08g0152700) mRNA, complete cds Length = 1817 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1496 ctgagatcaacagtagaagcaa 1517 |||||||||||||||||||||| Sbjct: 681 ctgagatcaacagtagaagcaa 660
>gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome 10, complete sequence Length = 187474 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1522 aaacagaaatatcatttggctgatag 1547 |||||||||||||| ||||||||||| Sbjct: 175773 aaacagaaatatcaattggctgatag 175798
>gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, complete sequence Length = 200476 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 671 taagaagagaaggccagggaat 692 |||||||||||||||||||||| Sbjct: 54709 taagaagagaaggccagggaat 54688
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1496 ctgagatcaacagtagaagcaa 1517 |||||||||||||||||||||| Sbjct: 3012491 ctgagatcaacagtagaagcaa 3012470
>gb|S77477.1| bone morphogenetic protein-7 [chickens, embryo, mRNA Partial, 973 nt] Length = 973 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2393 gggacatggggtggcaggactggatc 2418 ||||| |||||||||||||||||||| Sbjct: 666 gggacctggggtggcaggactggatc 691
>gb|AC006271.2|AC006271 Homo sapiens chromosome 19, BAC BC319430 (CTC-440L2), complete sequence Length = 100598 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1548 gaagggagaaaggaggaaggat 1569 |||||||||||||||||||||| Sbjct: 47364 gaagggagaaaggaggaaggat 47343
>gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome 13, complete sequence Length = 175727 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1543 gataggaagggagaaaggagga 1564 |||||||||||||||||||||| Sbjct: 161992 gataggaagggagaaaggagga 161971
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1496 ctgagatcaacagtagaagcaa 1517 |||||||||||||||||||||| Sbjct: 63214 ctgagatcaacagtagaagcaa 63193
>gb|AF205877.1|AF205877 Gallus gallus bone morphogenetic protein 7 (BMP7) mRNA, partial cds Length = 1653 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2393 gggacatggggtggcaggactggatc 2418 ||||| |||||||||||||||||||| Sbjct: 920 gggacctggggtggcaggactggatc 945
>dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F10, full insert sequence Length = 1818 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1496 ctgagatcaacagtagaagcaa 1517 |||||||||||||||||||||| Sbjct: 682 ctgagatcaacagtagaagcaa 661
>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence Length = 242449 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1972 gaagttgaaacaaaagatgaga 1993 |||||||||||||||||||||| Sbjct: 115872 gaagttgaaacaaaagatgaga 115893
>gb|AC154856.2| Mus musculus BAC clone RP23-20C2 from 13, complete sequence Length = 248953 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1543 gataggaagggagaaaggagga 1564 |||||||||||||||||||||| Sbjct: 5913 gataggaagggagaaaggagga 5892
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1287 gcacaaggcccagcagcacaat 1308 |||||||||||||||||||||| Sbjct: 534042 gcacaaggcccagcagcacaat 534021
>gb|M84463.1|CHPHAPGC2 P.troglodytes haptoglobin (HPR) gene, 3' end; haptoglobin (HPP) gene, complete cds Length = 23136 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1538 tggctgataggaagggagaaaggagg 1563 |||| ||||||||||||||||||||| Sbjct: 19434 tggcagataggaagggagaaaggagg 19409 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 483,077,832 Number of extensions: 25068030 Number of successful extensions: 143661 Number of sequences better than 10.0: 24 Number of HSP's gapped: 143646 Number of HSP's successfully gapped: 53 Length of query: 2754 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2731 Effective length of database: 18,503,978,556 Effective search space: 50534365436436 Effective search space used: 50534365436436 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
