ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf152d04 |
|---|---|
| Clone Library Name | barley_pub |
>Q9FHW7:SKP1B_ARATH SKP1-like protein 1B - Arabidopsis thaliana (Mouse-ear cress)| Length = 171 Score = 211 bits (537), Expect = 3e-54 Identities = 108/167 (64%), Positives = 114/167 (68%) Frame = +3 Query: 132 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 311 + ITLKSSDG SQTI+HMIEDDC DNGIPLPNV SKILSKVIEYC +HV Sbjct: 5 RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64 Query: 312 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIKGL 491 + EDLK WD+EF+KVDQ TLFDLILAANYLNIKGL Sbjct: 65 EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGL 124 Query: 492 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP NQWAFE Sbjct: 125 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>Q39255:SKP1A_ARATH SKP1-like protein 1A - Arabidopsis thaliana (Mouse-ear cress)| Length = 160 Score = 195 bits (496), Expect = 2e-49 Identities = 101/167 (60%), Positives = 111/167 (66%) Frame = +3 Query: 132 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 311 K I LKSSDG SQTI HM+EDDC DNG+PLPNV SKIL+KVIEYC +HV Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV 63 Query: 312 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIKGL 491 + +DLK WDA+F+K+DQATLF+LILAANYLNIK L Sbjct: 64 EAAASKAEAVEGAATSD----------DDLKAWDADFMKIDQATLFELILAANYLNIKNL 113 Query: 492 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 LDLTCQTVADMIKGKTPEEIR TFNIKNDFTP NQWAFE Sbjct: 114 LDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>Q71U00:SKP1_XENLA S-phase kinase-associated protein 1A - Xenopus laevis (African| clawed frog) Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q6PEC4:SKP1_RAT S-phase kinase-associated protein 1A - Rattus norvegicus (Rat)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q5R512:SKP1_PONPY S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q9WTX5:SKP1_MOUSE S-phase kinase-associated protein 1A - Mus musculus (Mouse)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q4R5B9:SKP1_MACFA S-phase kinase-associated protein 1A - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P63208:SKP1_HUMAN S-phase kinase-associated protein 1A - Homo sapiens (Human)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q5ZKF5:SKP1_CHICK S-phase kinase-associated protein 1A - Gallus gallus (Chicken)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P63209:SKP1_CAVPO S-phase kinase-associated protein 1A - Cavia porcellus (Guinea pig)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q3ZCF3:SKP1_BOVIN S-phase kinase-associated protein 1A - Bos taurus (Bovine)| Length = 163 Score = 144 bits (362), Expect = 6e-34 Identities = 82/170 (48%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNI 482 H +D+ WD EF+KVDQ TLF+LILAANYL+I Sbjct: 64 HHKDDPPPPEDDENKEKRT-----------DDIPVWDQEFLKVDQGTLFELILAANYLDI 112 Query: 483 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 632 KGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 113 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P52285:FP21_DICDI Glycoprotein FP21 precursor - Dictyostelium discoideum (Slime mold)| Length = 162 Score = 135 bits (340), Expect = 2e-31 Identities = 77/164 (46%), Positives = 97/164 (59%), Gaps = 1/164 (0%) Frame = +3 Query: 135 MITLKSSDGXXXXXXXXXXXXSQTIRHMIED-DCADNGIPLPNVNSKILSKVIEYCNKHV 311 ++ L+SSD S TI++MIED +D+ IPLPNV S IL KV++YC H Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHH 62 Query: 312 QXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIKGL 491 Q +D+ +D +F KVDQ TLF+LILAANYL+IK L Sbjct: 63 QHPSPQGDDKKDEKRL-----------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPL 111 Query: 492 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 623 LD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP N+W Sbjct: 112 LDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
>Q9Y709:SKP1_SCHPO Suppressor of kinetochore protein 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 161 Score = 119 bits (297), Expect = 2e-26 Identities = 68/164 (41%), Positives = 89/164 (54%), Gaps = 1/164 (0%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADN-GIPLPNVNSKILSKVIEYCNKHVQ 314 I L SSD S I++M+ED N IPLPNV+S +L KV+E+C H Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKN 63 Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIKGLL 494 D+ WD +F+ VDQ LF+++LA+NYL+IK LL Sbjct: 64 DLYSGTEEESDIRLKKST---------DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLL 114 Query: 495 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 626 D C+TVA+MI+GK+PE+IRKTFNI NDFTP N+WA Sbjct: 115 DTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158
>P52286:SKP1_YEAST Suppressor of kinetochore protein 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 194 Score = 109 bits (272), Expect = 2e-23 Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 2/137 (1%) Frame = +3 Query: 222 EDDCADNGI--PLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXXXXXXXXE 395 +DD D+ I P+PNV S +L KVIE+ H Sbjct: 67 DDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH------------RDSNFPDEDDDDSRKSA 114 Query: 396 DLKNWDAEFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 575 + +WD EF+KVDQ L+++ILAANYLNIK LLD C+ VA+MI+G++PEEIR+TFNI N Sbjct: 115 PVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN 174 Query: 576 DFTPXXXXXXXXXNQWA 626 DFTP N+WA Sbjct: 175 DFTPEEEAAIRRENEWA 191 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 113,088,430 Number of extensions: 2072051 Number of successful extensions: 4996 Number of sequences better than 10.0: 14 Number of HSP's gapped: 4967 Number of HSP's successfully gapped: 25 Length of query: 302 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 189 Effective length of database: 69,691,104 Effective search space: 13171618656 Effective search space used: 13171618656 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
