>Q3Z978:RL2_DEHE1 50S ribosomal protein L2 - Dehalococcoides ethenogenes (strain 195)|
          Length = 274
 Score = 40.4 bits (93), Expect = 0.027
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +1

Query: 604 PGSRSMASTSGFKADESGKPGKALLISSTNDHSAINQGMENVETGG----TSLEAIDGVA 771
           PG R   S S F+     +P KALL+S  ND    NQG   V   G    T +  ID   
Sbjct: 11  PGRRHH-SVSSFEEITKSRPEKALLVSVKNDSGRNNQGRVTVRHRGGGSKTQIRVIDFKR 69

Query: 772 GKHGALAKLVDI-YGRDETGRSTTMDTKGADKKRIVAPMDL 891
            K     ++  I Y  + T R   +     +K+ I+AP DL
Sbjct: 70  NKLDVPGRIAAIEYDPNRTARIALVFYTDGEKRYILAPSDL 110

>Q3ZZM1:RL2_DEHSC 50S ribosomal protein L2 - Dehalococcoides sp. (strain CBDB1)|
          Length = 274

 Score = 38.9 bits (89), Expect = 0.078
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +1

Query: 604 PGSRSMASTSGFKADESGKPGKALLISSTNDHSAINQGMENVETGG----TSLEAIDGVA 771
           PG R   S S F+     +P +ALL+S  ND    NQG   V   G    T +  ID   
Sbjct: 11  PGRRHH-SVSSFEEITKSRPERALLVSVKNDSGRNNQGRVTVRHRGGGSKTQIRVIDFKR 69

Query: 772 GKHGALAKLVDI-YGRDETGRSTTMDTKGADKKRIVAPMDL 891
            K     ++  I Y  + T R   +     +K+ I+AP DL
Sbjct: 70  NKLDVPGRVAAIEYDPNRTARIALVFYTDGEKRYILAPSDL 110

>P25425:PO2F1_MOUSE POU domain, class 2, transcription factor 1 - Mus musculus (Mouse)|
          Length = 770

 Score = 33.1 bits (74), Expect = 4.3
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = -3

Query: 1769 VIKLLESRVDQA---TFTEINPNSVFISRVSTPCVSAVKEQQCSPEPDGSEATSKFKSIV 1599
            V++ L  RV      T +  N N+  +   + P  SAV     SP P  S +TS+  S  
Sbjct: 510  VLRSLPDRVTTTAGTTDSTSNNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSAS 569

Query: 1598 EPCNAATTDLFRPRDSPMAPSKSRIS 1521
            E     TT    P  SP+  S+  ++
Sbjct: 570  ETNTTQTTS--TPLPSPLGASQVMVT 593

>Q29076:PO2F1_PIG POU domain, class 2, transcription factor 1 - Sus scrofa (Pig)|
          Length = 745

 Score = 32.7 bits (73), Expect = 5.6
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 1712 NSVFISRVSTPCVSAVKEQQCSPEPDGSEATSKFKSIVEPCNAATTDLFRPRDSPMAPSK 1533
            N+  +   + P  SAV     SP P  S +TS+  S  E     TT    P  SP+  S+
Sbjct: 506  NTATVISTAPPASSAVTSPSLSPSPSASGSTSEVSSASETSTTQTTS--TPLSSPLGTSQ 563

Query: 1532 SRISFS 1515
              ++ S
Sbjct: 564  VMVTAS 569

>P14859:PO2F1_HUMAN POU domain, class 2, transcription factor 1 - Homo sapiens (Human)|
          Length = 743

 Score = 32.7 bits (73), Expect = 5.6
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 1712 NSVFISRVSTPCVSAVKEQQCSPEPDGSEATSKFKSIVEPCNAATTDLFRPRDSPMAPSK 1533
            N+  +   + P  SAV     SP P  S +TS+  S  E     TT    P  SP+  S+
Sbjct: 504  NTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTTS--TPLSSPLGTSQ 561

Query: 1532 SRISFS 1515
              ++ S
Sbjct: 562  VMVTAS 567

>P31503:PO2F1_RAT POU domain, class 2, transcription factor 1 - Rattus norvegicus (Rat)|
          Length = 632

 Score = 32.3 bits (72), Expect = 7.3
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 1712 NSVFISRVSTPCVSAVKEQQCSPEPDGSEATSKFKSIVEPCNAATTDLFRPRDSPMAPSK 1533
            N+  +   + P  SAV     SP P  S +TS+  S  E     TT    P  SP+  S+
Sbjct: 393  NTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTTS--TPLPSPLGASQ 450

Query: 1532 SRISFS 1515
              ++ S
Sbjct: 451  VMVTAS 456


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 347,710,610
Number of extensions: 7990846
Number of successful extensions: 21889
Number of sequences better than 10.0: 6
Number of HSP's gapped: 21861
Number of HSP's successfully gapped: 6
Length of query: 648
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 528
Effective length of database: 67,771,039
Effective search space: 35783108592
Effective search space used: 35783108592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)